Wall clock time and date at job start Tue Mar 31 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34707 * 116.99618 * 2 1 4 4 O 1.21468 * 120.00815 * 0.02562 * 3 2 1 5 5 C 1.47749 * 119.99425 * 180.02562 * 3 2 1 6 6 C 1.39545 * 120.11631 * 5.78544 * 5 3 2 7 7 C 1.38626 * 119.76877 * 180.27186 * 6 5 3 8 8 N 1.39706 * 120.00453 * 179.72945 * 7 6 5 9 9 C 1.46496 * 120.00217 * 179.72531 * 8 7 6 10 10 C 1.53007 * 109.47295 * 184.65794 * 9 8 7 11 11 C 1.50697 * 115.55042 * 302.33751 * 10 9 8 12 12 H 1.07997 * 120.00218 * 86.24656 * 11 10 9 13 13 C 1.37885 * 120.00145 * 266.24760 * 11 10 9 14 14 N 1.31512 * 119.99332 * 5.56349 * 13 11 10 15 15 Si 1.86797 * 120.00218 * 185.56054 * 13 11 10 16 16 H 1.48499 * 109.46944 * 89.99763 * 15 13 11 17 17 H 1.48491 * 109.47249 * 209.99835 * 15 13 11 18 18 H 1.48499 * 109.47105 * 330.00141 * 15 13 11 19 19 C 1.52992 * 117.49595 * 88.00254 * 10 9 8 20 20 C 1.52997 * 117.49938 * 156.66583 * 10 9 8 21 21 C 1.39029 * 119.99456 * 359.45713 * 7 6 5 22 22 C 1.38213 * 120.23250 * 0.27634 * 21 7 6 23 23 C 1.38012 * 120.23467 * 359.97438 * 22 21 7 24 24 C 1.50698 * 120.00402 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47509 * 59.99502 * 1 2 3 26 26 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46760 * 299.99454 * 1 2 3 28 28 H 1.08002 * 120.11462 * 0.02835 * 6 5 3 29 29 H 0.97008 * 120.00063 * 359.72760 * 8 7 6 30 30 H 1.09001 * 109.46763 * 64.66119 * 9 8 7 31 31 H 1.08997 * 109.47645 * 304.66533 * 9 8 7 32 32 H 0.97007 * 119.99728 * 174.99817 * 14 13 11 33 33 H 1.09001 * 117.50292 * 215.00161 * 19 10 9 34 34 H 1.09005 * 117.50361 * 0.02562 * 19 10 9 35 35 H 1.09005 * 117.49740 * 359.97251 * 20 10 9 36 36 H 1.08996 * 117.50084 * 144.97808 * 20 10 9 37 37 H 1.08003 * 119.88762 * 180.29304 * 21 7 6 38 38 H 1.07998 * 119.88279 * 180.02562 * 22 21 7 39 39 H 1.09002 * 109.47179 * 96.56374 * 24 23 22 40 40 H 1.08996 * 109.47246 * 216.56877 * 24 23 22 41 41 H 1.09004 * 109.47038 * 336.56793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3010 0.1149 -0.1228 7 6 5.6849 0.1952 -0.1168 8 7 6.4526 -0.9662 -0.2332 9 6 7.9150 -0.8807 -0.2329 10 6 8.5071 -2.2684 -0.4878 11 6 8.0997 -3.3388 0.4915 12 1 7.1875 -3.8952 0.3349 13 6 8.8917 -3.6079 1.5877 14 7 9.9433 -2.8592 1.8388 15 14 8.4709 -5.0359 2.7161 16 1 9.1512 -6.2647 2.2341 17 1 8.9252 -4.7272 4.0957 18 1 7.0015 -5.2510 2.7153 19 6 8.7231 -2.6877 -1.9432 20 6 9.9240 -2.3375 -1.0609 21 6 6.3089 1.4322 -0.0007 22 6 5.5541 2.5842 0.1148 23 6 4.1757 2.5149 0.1151 24 6 3.3578 3.7743 0.2407 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.8142 -0.8445 -0.2178 29 1 6.0172 -1.8293 -0.3142 30 1 8.2572 -0.5118 0.7341 31 1 8.2393 -0.1975 -1.0178 32 1 10.4584 -3.0022 2.6483 33 1 8.5707 -3.7378 -2.1924 34 1 8.4439 -1.9749 -2.7192 35 1 10.4342 -1.3943 -1.2568 36 1 10.5617 -3.1569 -0.7294 37 1 7.3872 1.4932 -0.0010 38 1 6.0446 3.5422 0.2043 39 1 3.0568 4.1125 -0.7508 40 1 2.4705 3.5730 0.8409 41 1 3.9546 4.5486 0.7229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594702623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:12 Heat of formation + Delta-G solvation = -49.182790 kcal Electronic energy + Delta-G solvation = -22438.902295 eV Core-core repulsion = 19090.925087 eV Total energy + Delta-G solvation = -3347.977208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68310 -40.15734 -38.67918 -37.56540 -35.90262 -33.94528 -32.54945 -31.96660 -28.98844 -28.10490 -27.34872 -25.72093 -24.78587 -22.91025 -22.76900 -21.34003 -21.03970 -18.81382 -18.32377 -17.95623 -17.39303 -16.94139 -16.65226 -16.52423 -15.93969 -15.68227 -15.14391 -14.86621 -14.68368 -14.45397 -14.32579 -14.28284 -13.82008 -13.44123 -13.12011 -13.06330 -12.92804 -12.89486 -12.77286 -12.53253 -12.39194 -12.23100 -12.00336 -11.77039 -11.35703 -11.10010 -10.98281 -10.65827 -10.38891 -9.98621 -9.96624 -8.14660 -8.09211 -6.21562 -0.22854 0.63792 1.40436 1.43985 1.50990 1.57825 1.75120 2.41660 2.66433 2.90297 3.17791 3.57902 3.73189 3.97986 4.12330 4.25339 4.30511 4.32642 4.35294 4.47507 4.56200 4.59958 4.66682 4.70828 4.77632 4.87733 4.91912 4.96657 5.02761 5.06460 5.13734 5.28191 5.31637 5.39272 5.47685 5.62071 5.66886 5.69871 5.77060 5.91039 6.36691 6.58301 6.71646 6.84239 7.01919 7.47142 8.96842 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.003942 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.837045 B = 7101.867014 C = 7841.371136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.510 3.490 4 O -0.518 6.518 5 C -0.098 4.098 6 C -0.150 4.150 7 C 0.198 3.802 8 N -0.724 5.724 9 C 0.183 3.817 10 C 0.003 3.997 11 C -0.504 4.504 12 H 0.055 0.945 13 C 0.030 3.970 14 N -0.904 5.904 15 Si 0.943 3.057 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.270 1.270 19 C -0.187 4.187 20 C -0.147 4.147 21 C -0.171 4.171 22 C -0.077 4.077 23 C -0.099 4.099 24 C -0.104 4.104 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.401 0.599 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.259 0.741 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.695 8.797 -4.174 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.357 3.643 4 O -0.410 6.410 5 C -0.100 4.100 6 C -0.173 4.173 7 C 0.092 3.908 8 N -0.349 5.349 9 C 0.058 3.942 10 C 0.002 3.998 11 C -0.541 4.541 12 H 0.073 0.927 13 C -0.171 4.171 14 N -0.541 5.541 15 Si 0.770 3.230 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.194 1.194 19 C -0.225 4.225 20 C -0.185 4.185 21 C -0.194 4.194 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.161 4.161 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.236 0.764 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.174 0.826 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.511 9.052 -4.075 15.971 hybrid contribution -0.095 -1.353 0.819 1.584 sum -12.605 7.699 -3.256 15.125 Atomic orbital electron populations 1.23572 0.74331 1.05686 1.02773 1.86583 1.25298 1.32205 1.83876 1.21355 0.89291 0.81414 0.72228 1.90745 1.67345 1.35891 1.46985 1.18744 0.88406 0.94528 1.08329 1.20807 0.91597 0.98514 1.06424 1.18016 0.90537 0.87903 0.94365 1.44744 1.05250 1.05971 1.78970 1.20635 0.79144 0.96292 0.98093 1.19089 0.96277 0.93138 0.91295 1.20596 1.07246 1.18126 1.08171 0.92709 1.25579 0.94601 0.97934 0.98980 1.70079 1.18310 1.40026 1.25703 0.85795 0.78549 0.80408 0.78245 1.20520 1.21458 1.19444 1.23053 1.04327 1.00528 0.94547 1.22331 0.91579 1.00581 1.04005 1.21113 1.00676 0.91292 1.06308 1.20970 0.91994 0.98686 0.97853 1.19917 0.94310 0.93983 1.01962 1.20890 0.99306 0.93280 1.02591 0.91517 0.85315 0.91672 0.84680 0.76352 0.95073 0.93388 0.93204 0.90670 0.89335 0.90562 0.92141 0.85364 0.82650 0.91378 0.91001 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.29 9.83 -56.16 -0.55 -9.84 16 3 C 0.51 14.67 7.83 70.34 0.55 15.22 16 4 O -0.52 -15.62 13.10 19.94 0.26 -15.35 16 5 C -0.10 -2.91 5.87 -20.11 -0.12 -3.03 16 6 C -0.15 -4.62 9.46 22.68 0.21 -4.41 16 7 C 0.20 6.53 6.65 38.17 0.25 6.78 16 8 N -0.72 -26.41 5.61 -339.53 -1.90 -28.31 16 9 C 0.18 7.37 4.82 86.38 0.42 7.79 16 10 C 0.00 0.12 1.65 -52.93 -0.09 0.03 16 11 C -0.50 -25.40 8.28 25.60 0.21 -25.18 16 12 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 13 C 0.03 1.56 5.36 84.66 0.45 2.01 16 14 N -0.90 -49.27 12.37 21.45 0.27 -49.01 16 15 Si 0.94 41.96 29.54 68.60 2.03 43.98 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.19 -7.42 9.94 30.62 0.30 -7.12 16 20 C -0.15 -6.48 8.97 30.62 0.27 -6.20 16 21 C -0.17 -5.12 9.28 22.45 0.21 -4.91 16 22 C -0.08 -1.96 9.65 22.21 0.21 -1.74 16 23 C -0.10 -2.68 5.92 -19.58 -0.12 -2.80 16 24 C -0.10 -2.42 8.74 71.24 0.62 -1.80 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.14 3.96 7.62 -2.91 -0.02 3.94 16 29 H 0.40 14.84 8.07 -92.70 -0.75 14.09 16 30 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 31 H 0.05 1.76 7.67 -2.39 -0.02 1.74 16 32 H 0.26 13.67 8.32 -92.70 -0.77 12.90 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 35 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 36 H 0.06 2.97 7.97 -2.39 -0.02 2.95 16 37 H 0.13 3.77 6.70 -2.91 -0.02 3.75 16 38 H 0.16 2.97 8.05 -2.91 -0.02 2.94 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.87 5.82 -2.39 -0.01 1.86 16 41 H 0.08 1.41 8.04 -2.38 -0.02 1.40 16 Total: -1.00 -58.02 345.94 4.99 -53.04 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.29 Total: 29.16 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.60 Total: -23.67 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.64 Total: -77.32 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.29 Total: -25.20 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -58.02 4.99 -53.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.855 kcal (2) G-P(sol) polarization free energy of solvation -58.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds