Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34763 * 116.99622 * 2 1 4 4 O 1.21510 * 120.00329 * 0.02562 * 3 2 1 5 5 C 1.47386 * 119.99569 * 179.97438 * 3 2 1 6 6 C 1.39857 * 120.07151 * 5.82894 * 5 3 2 7 7 C 1.36586 * 120.04422 * 179.74250 * 6 5 3 8 8 C 1.39236 * 120.20278 * 0.55267 * 7 6 5 9 9 N 1.39007 * 119.92324 * 179.72039 * 8 7 6 10 10 C 1.46501 * 120.00596 * 359.72668 * 9 8 7 11 11 C 1.52998 * 109.47482 * 184.65893 * 10 9 8 12 12 C 1.50701 * 115.54976 * 302.48930 * 11 10 9 13 13 H 1.08002 * 119.99626 * 86.24976 * 12 11 10 14 14 C 1.37872 * 119.99829 * 266.24161 * 12 11 10 15 15 N 1.31520 * 120.00105 * 5.56933 * 14 12 11 16 16 Si 1.86802 * 119.99951 * 185.56154 * 14 12 11 17 17 H 1.48501 * 109.47042 * 60.00365 * 16 14 12 18 18 H 1.48496 * 109.47292 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47076 * 300.00463 * 16 14 12 20 20 C 1.52999 * 117.49481 * 88.15971 * 11 10 9 21 21 C 1.52998 * 117.49606 * 156.81804 * 11 10 9 22 22 C 1.39237 * 120.14671 * 359.44311 * 8 7 6 23 23 C 1.37637 * 119.94802 * 0.27710 * 22 8 7 24 24 C 1.50702 * 120.09890 * 179.97438 * 23 22 8 25 25 H 1.08996 * 109.47068 * 300.00098 * 1 2 3 26 26 H 1.08997 * 109.47308 * 59.99874 * 1 2 3 27 27 H 1.08997 * 109.47374 * 179.97438 * 1 2 3 28 28 H 1.07992 * 119.97997 * 0.02562 * 6 5 3 29 29 H 1.08003 * 119.89093 * 180.27299 * 7 6 5 30 30 H 0.97008 * 120.00132 * 179.72982 * 9 8 7 31 31 H 1.09002 * 109.47115 * 64.65649 * 10 9 8 32 32 H 1.09003 * 109.46863 * 304.66390 * 10 9 8 33 33 H 0.97003 * 119.99435 * 174.99513 * 15 14 12 34 34 H 1.09005 * 117.49508 * 214.99836 * 20 11 10 35 35 H 1.08999 * 117.50460 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.50435 * 359.97438 * 21 11 10 37 37 H 1.09003 * 117.50081 * 144.97645 * 21 11 10 38 38 H 1.08000 * 120.02651 * 180.24704 * 22 8 7 39 39 H 1.09003 * 109.47092 * 96.55069 * 24 23 22 40 40 H 1.09007 * 109.46819 * 216.54649 * 24 23 22 41 41 H 1.08999 * 109.47442 * 336.54361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2985 0.1121 -0.1218 7 6 5.6624 0.1848 -0.1265 8 6 6.2987 1.4166 0.0019 9 7 7.6871 1.4832 0.0022 10 6 8.4794 0.2576 -0.1264 11 6 9.9651 0.5931 0.0187 12 6 10.5012 1.6063 -0.9596 13 1 10.4246 2.6611 -0.7408 14 6 11.0895 1.1866 -2.1338 15 7 11.0854 -0.0895 -2.4519 16 14 11.8922 2.4306 -3.2730 17 1 12.9876 3.1273 -2.5519 18 1 12.4468 1.7300 -4.4590 19 1 10.8798 3.4235 -3.7137 20 6 10.5545 0.5936 1.4306 21 6 10.9042 -0.5332 0.4552 22 6 5.5472 2.5824 0.1241 23 6 4.1724 2.5169 0.1238 24 6 3.3558 3.7765 0.2565 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.8088 -0.8457 -0.2173 29 1 6.2491 -0.7166 -0.2256 30 1 8.1316 2.3412 0.0877 31 1 8.3016 -0.1890 -1.1047 32 1 8.1881 -0.4468 0.6529 33 1 11.4340 -0.3764 -3.3104 34 1 11.3302 1.3268 1.6518 35 1 9.8841 0.3545 2.2560 36 1 10.4636 -1.5130 0.6394 37 1 11.9098 -0.5415 0.0345 38 1 6.0428 3.5372 0.2196 39 1 3.0557 4.1209 -0.7331 40 1 2.4679 3.5725 0.8550 41 1 3.9531 4.5472 0.7438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -39.890508 kcal Electronic energy + Delta-G solvation = -22318.217701 eV Core-core repulsion = 18970.643436 eV Total energy + Delta-G solvation = -3347.574264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45122 -39.00157 -37.13678 -36.30950 -34.53936 -32.18048 -32.04447 -29.94117 -27.99101 -26.66665 -25.96250 -25.02721 -22.90332 -21.60653 -21.18869 -20.10377 -19.31309 -17.70703 -16.91028 -16.48908 -16.23742 -16.15457 -15.19122 -14.77028 -14.44641 -14.11573 -13.98456 -13.53238 -13.51097 -13.11796 -12.93982 -12.66718 -12.65448 -12.30603 -12.04072 -11.92837 -11.69743 -11.60331 -11.06818 -11.02951 -10.74219 -10.69376 -10.60885 -10.31939 -9.90594 -9.75186 -9.64112 -9.01168 -8.58198 -8.54792 -8.29849 -7.01615 -6.17684 -4.27286 1.20395 1.72779 2.85116 2.88790 3.21413 3.27308 3.29348 3.93871 4.12937 4.28185 4.97992 5.02541 5.04554 5.08028 5.10923 5.13559 5.25305 5.43010 5.52405 5.66401 5.72912 5.85416 5.90480 6.01592 6.11543 6.19136 6.26606 6.31883 6.37837 6.42301 6.57134 6.61490 6.66736 6.68931 6.84985 7.00462 7.06684 7.25820 7.42821 7.70741 7.81971 7.97473 8.22209 8.26370 8.73701 9.40501 10.89362 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.003421 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.725517 B = 8182.589368 C = 8516.651173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.515 3.485 4 O -0.523 6.523 5 C -0.226 4.226 6 C -0.004 4.004 7 C -0.226 4.226 8 C 0.276 3.724 9 N -0.698 5.698 10 C 0.158 3.842 11 C 0.023 3.977 12 C -0.503 4.503 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.138 4.138 22 C -0.231 4.231 23 C 0.037 3.963 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.407 0.593 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 0.036 5.080 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.364 3.636 4 O -0.414 6.414 5 C -0.230 4.230 6 C -0.023 4.023 7 C -0.249 4.249 8 C 0.162 3.838 9 N -0.318 5.318 10 C 0.034 3.966 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.250 4.250 21 C -0.176 4.176 22 C -0.254 4.254 23 C 0.035 3.965 24 C -0.177 4.177 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.243 0.757 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.028 -0.033 4.931 14.870 hybrid contribution 0.544 0.841 -0.776 1.267 sum -13.485 0.808 4.155 14.133 Atomic orbital electron populations 1.23167 0.76921 1.03221 1.02251 1.86572 1.22805 1.33499 1.84904 1.21234 0.89290 0.80851 0.72221 1.90740 1.67245 1.35470 1.47943 1.18410 0.88037 0.94601 1.21950 1.20780 0.93151 0.97154 0.91234 1.20387 0.94517 0.96812 1.13182 1.18269 0.84618 0.93665 0.87290 1.45089 1.01566 1.11386 1.73714 1.21160 0.91526 0.84374 0.99545 1.18967 0.88673 0.98452 0.91647 1.20274 1.38905 0.91636 1.03197 0.92310 1.24972 0.95050 0.95112 0.97765 1.69968 1.45202 1.14163 1.21749 0.86679 0.79949 0.81390 0.80141 1.20153 1.21197 1.20154 1.23106 1.04402 1.03507 0.93961 1.22429 1.01551 0.91675 1.01975 1.20346 0.92587 0.97200 1.15262 1.19574 0.92935 0.93563 0.90425 1.21093 0.99963 0.93636 1.03049 0.92195 0.92174 0.88464 0.85337 0.85405 0.75733 0.91631 0.94332 0.92732 0.90372 0.91731 0.91804 0.89376 0.85605 0.90822 0.89212 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.66 9.82 -40.66 -0.40 -5.06 16 3 C 0.52 7.68 7.82 34.45 0.27 7.95 16 4 O -0.52 -8.38 13.11 -19.27 -0.25 -8.63 16 5 C -0.23 -3.45 5.88 -104.96 -0.62 -4.07 16 6 C 0.00 -0.06 9.55 -39.57 -0.38 -0.43 16 7 C -0.23 -3.56 9.21 -39.81 -0.37 -3.92 16 8 C 0.28 4.57 6.65 -83.87 -0.56 4.01 16 9 N -0.70 -12.51 5.58 -58.64 -0.33 -12.84 16 10 C 0.16 3.12 4.80 -4.04 -0.02 3.10 16 11 C 0.02 0.52 1.66 -155.66 -0.26 0.26 16 12 C -0.50 -12.45 8.27 -34.44 -0.28 -12.73 16 13 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 14 C 0.08 1.93 5.36 -17.82 -0.10 1.83 16 15 N -0.88 -23.22 12.37 55.43 0.69 -22.54 16 16 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 C -0.21 -4.27 9.94 -26.69 -0.27 -4.53 16 21 C -0.14 -3.01 8.97 -26.69 -0.24 -3.25 16 22 C -0.23 -3.54 9.51 -39.43 -0.37 -3.91 16 23 C 0.04 0.55 5.91 -104.24 -0.62 -0.07 16 24 C -0.12 -1.62 8.74 36.01 0.31 -1.30 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.13 1.61 7.61 -52.49 -0.40 1.21 16 29 H 0.13 1.96 6.68 -52.48 -0.35 1.60 16 30 H 0.41 7.26 8.06 -40.82 -0.33 6.93 16 31 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 32 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.26 6.76 8.32 -40.82 -0.34 6.43 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 2.10 7.97 -51.93 -0.41 1.69 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.27 5.84 -51.92 -0.30 0.97 16 41 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -27.15 345.71 -8.49 -35.64 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.96 Total: 8.81 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.42 Total: -15.64 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.36 Total: -35.38 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.65 Total: -13.70 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.15 -8.49 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.255 kcal (2) G-P(sol) polarization free energy of solvation -27.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds