Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34763 * 116.99622 * 2 1 4 4 O 1.21510 * 120.00329 * 0.02562 * 3 2 1 5 5 C 1.47386 * 119.99569 * 179.97438 * 3 2 1 6 6 C 1.39857 * 120.07151 * 5.82894 * 5 3 2 7 7 C 1.36586 * 120.04422 * 179.74250 * 6 5 3 8 8 C 1.39236 * 120.20278 * 0.55267 * 7 6 5 9 9 N 1.39007 * 119.92324 * 179.72039 * 8 7 6 10 10 C 1.46501 * 120.00596 * 359.72668 * 9 8 7 11 11 C 1.52998 * 109.47482 * 184.65893 * 10 9 8 12 12 C 1.50701 * 115.54976 * 302.48930 * 11 10 9 13 13 H 1.08002 * 119.99626 * 86.24976 * 12 11 10 14 14 C 1.37872 * 119.99829 * 266.24161 * 12 11 10 15 15 N 1.31520 * 120.00105 * 5.56933 * 14 12 11 16 16 Si 1.86802 * 119.99951 * 185.56154 * 14 12 11 17 17 H 1.48501 * 109.47042 * 60.00365 * 16 14 12 18 18 H 1.48496 * 109.47292 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47076 * 300.00463 * 16 14 12 20 20 C 1.52999 * 117.49481 * 88.15971 * 11 10 9 21 21 C 1.52998 * 117.49606 * 156.81804 * 11 10 9 22 22 C 1.39237 * 120.14671 * 359.44311 * 8 7 6 23 23 C 1.37637 * 119.94802 * 0.27710 * 22 8 7 24 24 C 1.50702 * 120.09890 * 179.97438 * 23 22 8 25 25 H 1.08996 * 109.47068 * 300.00098 * 1 2 3 26 26 H 1.08997 * 109.47308 * 59.99874 * 1 2 3 27 27 H 1.08997 * 109.47374 * 179.97438 * 1 2 3 28 28 H 1.07992 * 119.97997 * 0.02562 * 6 5 3 29 29 H 1.08003 * 119.89093 * 180.27299 * 7 6 5 30 30 H 0.97008 * 120.00132 * 179.72982 * 9 8 7 31 31 H 1.09002 * 109.47115 * 64.65649 * 10 9 8 32 32 H 1.09003 * 109.46863 * 304.66390 * 10 9 8 33 33 H 0.97003 * 119.99435 * 174.99513 * 15 14 12 34 34 H 1.09005 * 117.49508 * 214.99836 * 20 11 10 35 35 H 1.08999 * 117.50460 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.50435 * 359.97438 * 21 11 10 37 37 H 1.09003 * 117.50081 * 144.97645 * 21 11 10 38 38 H 1.08000 * 120.02651 * 180.24704 * 22 8 7 39 39 H 1.09003 * 109.47092 * 96.55069 * 24 23 22 40 40 H 1.09007 * 109.46819 * 216.54649 * 24 23 22 41 41 H 1.08999 * 109.47442 * 336.54361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2985 0.1121 -0.1218 7 6 5.6624 0.1848 -0.1265 8 6 6.2987 1.4166 0.0019 9 7 7.6871 1.4832 0.0022 10 6 8.4794 0.2576 -0.1264 11 6 9.9651 0.5931 0.0187 12 6 10.5012 1.6063 -0.9596 13 1 10.4246 2.6611 -0.7408 14 6 11.0895 1.1866 -2.1338 15 7 11.0854 -0.0895 -2.4519 16 14 11.8922 2.4306 -3.2730 17 1 12.9876 3.1273 -2.5519 18 1 12.4468 1.7300 -4.4590 19 1 10.8798 3.4235 -3.7137 20 6 10.5545 0.5936 1.4306 21 6 10.9042 -0.5332 0.4552 22 6 5.5472 2.5824 0.1241 23 6 4.1724 2.5169 0.1238 24 6 3.3558 3.7765 0.2565 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.8088 -0.8457 -0.2173 29 1 6.2491 -0.7166 -0.2256 30 1 8.1316 2.3412 0.0877 31 1 8.3016 -0.1890 -1.1047 32 1 8.1881 -0.4468 0.6529 33 1 11.4340 -0.3764 -3.3104 34 1 11.3302 1.3268 1.6518 35 1 9.8841 0.3545 2.2560 36 1 10.4636 -1.5130 0.6394 37 1 11.9098 -0.5415 0.0345 38 1 6.0428 3.5372 0.2196 39 1 3.0557 4.1209 -0.7331 40 1 2.4679 3.5725 0.8550 41 1 3.9531 4.5472 0.7438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594704727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -52.463441 kcal Electronic energy + Delta-G solvation = -22318.762904 eV Core-core repulsion = 18970.643436 eV Total energy + Delta-G solvation = -3348.119468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.57384 -40.21694 -38.68868 -37.43768 -35.91005 -33.95648 -33.33165 -31.20585 -29.00998 -27.77617 -27.61295 -26.57902 -24.10896 -22.86541 -22.73435 -21.42288 -20.92189 -18.82367 -18.29381 -17.77216 -17.64197 -17.26668 -16.72042 -16.47004 -15.71848 -15.52166 -15.23312 -14.80306 -14.65903 -14.43187 -14.33454 -13.99157 -13.76943 -13.59105 -13.27483 -13.08103 -13.00297 -12.88198 -12.87033 -12.79285 -12.39502 -12.02073 -11.85962 -11.69365 -11.39111 -11.13212 -11.03459 -10.75366 -10.40996 -10.01169 -9.74964 -8.33771 -8.11144 -6.23742 0.00485 0.54207 1.41570 1.43828 1.49080 1.68596 1.89569 2.40206 2.57099 2.92952 3.16215 3.55875 3.86616 3.91416 4.04188 4.23646 4.35579 4.37442 4.39645 4.51436 4.55242 4.57239 4.64362 4.74367 4.75125 4.84892 4.86901 4.96625 5.02325 5.05190 5.21825 5.29025 5.30684 5.40324 5.49049 5.58981 5.67891 5.70699 5.75183 5.88327 6.33354 6.47974 6.82005 6.86708 6.90108 7.45464 8.94969 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.003421 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.725517 B = 8182.589368 C = 8516.651173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.515 3.485 4 O -0.537 6.537 5 C -0.234 4.234 6 C 0.001 3.999 7 C -0.234 4.234 8 C 0.260 3.740 9 N -0.705 5.705 10 C 0.176 3.824 11 C 0.003 3.997 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.030 3.970 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.187 4.187 21 C -0.147 4.147 22 C -0.230 4.230 23 C 0.028 3.972 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.406 0.594 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 0.346 5.793 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.365 3.635 4 O -0.430 6.430 5 C -0.237 4.237 6 C -0.018 4.018 7 C -0.257 4.257 8 C 0.148 3.852 9 N -0.326 5.326 10 C 0.051 3.949 11 C 0.002 3.998 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.171 4.171 15 N -0.540 5.540 16 Si 0.770 3.230 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.224 4.224 21 C -0.185 4.185 22 C -0.252 4.252 23 C 0.027 3.973 24 C -0.172 4.172 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.241 0.759 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.424 0.280 5.654 16.430 hybrid contribution 0.824 0.731 -0.963 1.463 sum -14.600 1.011 4.691 15.368 Atomic orbital electron populations 1.23507 0.74757 1.05523 1.02436 1.86550 1.24909 1.32293 1.84363 1.21179 0.89181 0.81248 0.71940 1.90734 1.67555 1.36089 1.48645 1.18675 0.88711 0.94976 1.21372 1.20957 0.92654 0.97927 0.90253 1.20504 0.95092 0.96673 1.13420 1.18444 0.84066 0.94507 0.88137 1.44883 1.01962 1.10511 1.75224 1.20778 0.90333 0.85312 0.98461 1.19061 0.89894 0.98232 0.92563 1.20587 1.38199 0.92175 1.03616 0.92561 1.25587 0.95844 0.96395 0.99254 1.70070 1.46525 1.15428 1.21942 0.85846 0.79097 0.79556 0.78489 1.19918 1.21497 1.19933 1.23069 1.03875 1.01935 0.93552 1.22341 1.00249 0.92786 1.03140 1.20499 0.92703 0.97413 1.14631 1.19830 0.93038 0.94328 0.90117 1.21060 0.99669 0.93369 1.03092 0.91931 0.92114 0.85175 0.83343 0.85331 0.75882 0.94534 0.92801 0.93150 0.90623 0.89229 0.90500 0.92107 0.84304 0.90789 0.89951 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -8.67 9.82 -56.74 -0.56 -9.23 16 3 C 0.52 14.56 7.82 70.23 0.55 15.11 16 4 O -0.54 -16.52 13.11 19.80 0.26 -16.26 16 5 C -0.23 -6.79 5.88 -20.09 -0.12 -6.90 16 6 C 0.00 0.03 9.55 22.28 0.21 0.25 16 7 C -0.23 -7.12 9.21 22.12 0.20 -6.92 16 8 C 0.26 8.38 6.65 38.48 0.26 8.64 16 9 N -0.70 -24.79 5.58 -339.43 -1.89 -26.68 16 10 C 0.18 6.89 4.80 86.38 0.41 7.30 16 11 C 0.00 0.14 1.66 -52.93 -0.09 0.05 16 12 C -0.51 -25.18 8.27 25.60 0.21 -24.96 16 13 H 0.06 2.75 7.82 -2.91 -0.02 2.73 16 14 C 0.03 1.56 5.36 84.65 0.45 2.02 16 15 N -0.90 -48.68 12.37 21.45 0.27 -48.42 16 16 Si 0.94 41.47 29.54 68.60 2.03 43.50 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.19 -7.24 9.94 30.62 0.30 -6.94 16 21 C -0.15 -6.37 8.97 30.62 0.27 -6.10 16 22 C -0.23 -6.73 9.51 22.37 0.21 -6.52 16 23 C 0.03 0.81 5.91 -19.61 -0.12 0.70 16 24 C -0.12 -2.90 8.74 71.24 0.62 -2.28 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.15 3.41 7.61 -2.91 -0.02 3.39 16 29 H 0.13 3.84 6.68 -2.91 -0.02 3.82 16 30 H 0.41 14.23 8.06 -92.70 -0.75 13.48 16 31 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 32 H 0.05 1.92 7.66 -2.39 -0.02 1.90 16 33 H 0.26 13.61 8.32 -92.71 -0.77 12.84 16 34 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 37 H 0.06 2.95 7.97 -2.39 -0.02 2.93 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.21 5.84 -2.38 -0.01 2.20 16 41 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -57.20 345.71 4.98 -52.22 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.29 Total: 29.74 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 4.59 Total: -24.86 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.63 Total: -75.10 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.30 Total: -25.49 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -57.20 4.98 -52.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.243 kcal (2) G-P(sol) polarization free energy of solvation -57.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds