Wall clock time and date at job start Tue Mar 31 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.50704 * 109.46994 * 119.99882 * 2 1 3 5 5 H 1.07998 * 119.99803 * 117.42452 * 4 2 1 6 6 C 1.37872 * 119.99967 * 297.42552 * 4 2 1 7 7 N 1.31513 * 120.00504 * 6.33369 * 6 4 2 8 8 Si 1.86809 * 119.99793 * 186.32749 * 6 4 2 9 9 H 1.48501 * 109.46757 * 84.99789 * 8 6 4 10 10 H 1.48492 * 109.47157 * 204.99528 * 8 6 4 11 11 H 1.48496 * 109.47052 * 324.99771 * 8 6 4 12 12 C 1.53000 * 109.47146 * 239.99922 * 2 1 3 13 13 S 1.81401 * 109.47062 * 60.00178 * 12 2 1 14 14 O 1.42104 * 110.54232 * 291.62524 * 13 12 2 15 15 O 1.42103 * 110.54443 * 68.37296 * 13 12 2 16 16 N 1.65593 * 104.45132 * 179.97438 * 13 12 2 17 17 C 1.46504 * 119.99798 * 64.17164 * 16 13 12 18 18 C 1.53003 * 115.55014 * 38.61826 * 17 16 13 19 19 C 1.52997 * 117.49962 * 252.90920 * 17 16 13 20 20 C 1.52997 * 60.00172 * 252.50819 * 19 17 16 21 21 C 1.52991 * 117.50386 * 252.50845 * 20 19 17 22 22 C 1.53002 * 117.51623 * 107.47978 * 20 19 17 23 23 H 1.09003 * 109.47450 * 300.00195 * 1 2 3 24 24 H 1.09000 * 109.46935 * 59.99878 * 1 2 3 25 25 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46921 * 186.71705 * 3 2 1 27 27 H 1.08995 * 109.47141 * 306.72285 * 3 2 1 28 28 H 1.09004 * 109.46856 * 66.72315 * 3 2 1 29 29 H 0.96992 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47016 * 180.02562 * 12 2 1 31 31 H 1.08999 * 109.47313 * 300.00300 * 12 2 1 32 32 H 0.96997 * 120.00771 * 244.17290 * 16 13 12 33 33 H 1.08997 * 109.46788 * 60.75755 * 18 17 16 34 34 H 1.08997 * 109.47168 * 180.75332 * 18 17 16 35 35 H 1.08998 * 109.46884 * 300.76345 * 18 17 16 36 36 H 1.08996 * 117.50212 * 0.02562 * 19 17 16 37 37 H 1.09000 * 117.49672 * 145.02108 * 19 17 16 38 38 H 1.09003 * 109.47410 * 128.61963 * 21 20 19 39 39 H 1.09004 * 109.47702 * 248.62140 * 21 20 19 40 40 H 1.09008 * 109.47070 * 8.62472 * 21 20 19 41 41 H 1.09004 * 109.47014 * 351.37306 * 22 20 19 42 42 H 1.08999 * 109.47144 * 111.37256 * 22 20 19 43 43 H 1.09004 * 109.47355 * 231.37766 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6184 -1.6121 1.1320 6 6 1.7436 -0.2092 2.4820 7 7 0.9282 0.8149 2.6083 8 14 2.5105 -0.9849 3.9986 9 1 3.8545 -0.3969 4.2293 10 1 1.6471 -0.7243 5.1782 11 1 2.6396 -2.4500 3.7936 12 6 2.0400 -0.7213 -1.2492 13 16 1.4354 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0480 1.4101 -2.8544 16 7 2.0541 -0.7399 -3.9936 17 6 1.6390 -2.1304 -4.1952 18 6 0.1623 -2.4243 -3.9233 19 6 2.6519 -3.2261 -3.8570 20 6 2.3204 -2.9154 -5.3179 21 6 1.4732 -3.9344 -6.0824 22 6 3.3828 -2.1879 -6.1445 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1233 1.4448 -0.1202 27 1 1.5818 1.9899 -0.8237 28 1 1.7782 1.9204 0.9441 29 1 0.7248 1.1673 3.4887 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 2.6913 -0.3313 -4.6000 33 1 -0.4562 -1.8300 -4.5958 34 1 -0.0340 -3.4835 -4.0899 35 1 -0.0747 -2.1688 -2.8905 36 1 3.6268 -2.9126 -3.4840 37 1 2.2663 -4.1567 -3.4404 38 1 0.6326 -3.4265 -6.5552 39 1 2.0842 -4.4145 -6.8469 40 1 1.0991 -4.6884 -5.3898 41 1 4.1909 -1.8606 -5.4903 42 1 3.7796 -2.8639 -6.9019 43 1 2.9347 -1.3209 -6.6300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595361286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:58 Heat of formation + Delta-G solvation = -60.587962 kcal Electronic energy + Delta-G solvation = -22971.667180 eV Core-core repulsion = 19758.639358 eV Total energy + Delta-G solvation = -3213.027822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.37965 -36.50435 -36.25791 -35.27058 -32.93541 -31.66494 -29.89716 -28.00940 -26.87922 -26.60511 -25.70877 -25.21703 -21.25727 -19.50591 -19.11046 -18.44516 -17.24938 -16.16867 -15.83571 -15.30325 -14.83491 -14.77743 -14.50848 -13.98425 -13.54285 -13.10372 -12.96842 -12.93500 -12.70029 -12.49830 -12.35622 -12.20775 -12.00369 -11.78977 -11.68685 -11.37141 -11.20575 -11.12060 -10.99232 -10.92238 -10.81340 -10.66517 -10.34876 -10.28945 -10.06513 -9.65119 -9.59346 -9.50567 -8.93700 -8.64928 -8.37171 -6.03275 -4.14631 0.90293 3.17216 3.26459 3.33472 3.34968 3.54325 4.29992 4.38914 4.50393 4.60090 4.72584 4.84317 4.90124 5.07542 5.21905 5.44792 5.48921 5.68142 5.71194 5.73156 5.74876 5.77054 5.79076 5.81299 5.92345 6.03166 6.16980 6.25275 6.40197 6.49707 6.70673 6.79844 6.92414 7.03854 7.15994 7.32283 7.49869 7.68439 7.98725 8.10818 8.34605 8.83725 9.50440 10.97881 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.005126 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.796970 B = 5461.519483 C = 5904.574065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.161 4.161 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.578 4.578 13 S 2.595 3.405 14 O -0.960 6.960 15 O -0.969 6.969 16 N -1.096 6.096 17 C 0.115 3.885 18 C -0.133 4.133 19 C -0.183 4.183 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.120 4.120 23 H 0.096 0.904 24 H 0.028 0.972 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.025 0.975 28 H 0.095 0.905 29 H 0.262 0.738 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.410 0.590 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -8.043 -14.740 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.219 4.219 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.712 4.712 13 S 2.693 3.307 14 O -0.949 6.949 15 O -0.959 6.959 16 N -0.850 5.850 17 C 0.024 3.976 18 C -0.191 4.191 19 C -0.223 4.223 20 C -0.124 4.124 21 C -0.172 4.172 22 C -0.177 4.177 23 H 0.114 0.886 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.872 -7.189 -14.602 16.383 hybrid contribution 1.268 -0.753 0.887 1.721 sum 3.140 -7.942 -13.716 16.157 Atomic orbital electron populations 1.22295 0.96808 1.00609 1.02357 1.17928 0.92921 0.92039 0.89124 1.22216 0.98965 0.97710 1.03013 1.20933 1.33515 1.10201 0.89415 0.92318 1.24931 0.94750 0.95159 0.98858 1.69808 1.33973 1.24764 1.23512 0.86575 0.79269 0.79564 0.82370 1.20573 1.21197 1.20021 1.30516 1.11172 1.12830 1.16698 1.05605 0.75102 0.74395 0.75593 1.93550 1.29760 1.86243 1.85395 1.93551 1.78282 1.38183 1.85893 1.55386 1.61453 1.21585 1.46560 1.20614 0.93382 0.79713 1.03886 1.21776 0.90892 1.01818 1.04599 1.23893 1.01077 1.00379 0.96925 1.21877 0.99961 1.00210 0.90346 1.21380 0.99049 0.97138 0.99614 1.21347 0.96994 1.00011 0.99376 0.88564 0.95366 0.94509 0.94672 0.95594 0.88671 0.92733 0.86503 0.86331 0.75571 0.90626 0.91157 0.90002 0.88159 0.87849 0.91909 0.92114 0.92017 0.92101 0.91831 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.80 37.16 0.29 -3.71 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.01 7.58 37.16 0.28 -3.72 16 4 C -0.50 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 7 N -0.88 -24.08 9.38 55.43 0.52 -23.56 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.58 -11.37 4.99 37.16 0.19 -11.18 16 13 S 2.59 48.65 4.26 -107.50 -0.46 48.19 16 14 O -0.96 -19.70 12.57 -57.54 -0.72 -20.42 16 15 O -0.97 -20.78 15.84 -57.54 -0.91 -21.69 16 16 N -1.10 -15.69 5.85 0.54 0.00 -15.68 16 17 C 0.11 1.45 2.92 -131.82 -0.38 1.07 16 18 C -0.13 -1.75 7.78 37.16 0.29 -1.46 16 19 C -0.18 -2.00 9.46 -26.73 -0.25 -2.25 16 20 C -0.12 -1.23 2.70 -154.51 -0.42 -1.65 16 21 C -0.11 -0.95 8.66 37.15 0.32 -0.63 16 22 C -0.12 -1.07 8.64 37.16 0.32 -0.75 16 23 H 0.10 2.56 6.04 -51.93 -0.31 2.24 16 24 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 28 H 0.09 2.54 5.96 -51.93 -0.31 2.23 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 31 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 32 H 0.41 5.13 7.51 -34.47 -0.26 4.87 16 33 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 34 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 35 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 36 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 37 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 40 H 0.06 0.48 7.23 -51.92 -0.38 0.10 16 41 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 42 H 0.06 0.48 7.92 -51.93 -0.41 0.06 16 43 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -30.77 336.97 -8.42 -39.20 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.10 Total: 7.47 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 0.19 Total: -34.16 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.52 Total: -39.24 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.63 Total: -42.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 48.65 SS G_CDS: -0.46 Total: 48.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.77 -8.42 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595361286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.392 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds