Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.50704 * 109.46994 * 119.99882 * 2 1 3 5 5 H 1.07998 * 119.99803 * 117.42452 * 4 2 1 6 6 C 1.37872 * 119.99967 * 297.42552 * 4 2 1 7 7 N 1.31513 * 120.00504 * 6.33369 * 6 4 2 8 8 Si 1.86809 * 119.99793 * 186.32749 * 6 4 2 9 9 H 1.48501 * 109.46757 * 84.99789 * 8 6 4 10 10 H 1.48492 * 109.47157 * 204.99528 * 8 6 4 11 11 H 1.48496 * 109.47052 * 324.99771 * 8 6 4 12 12 C 1.53000 * 109.47146 * 239.99922 * 2 1 3 13 13 S 1.81401 * 109.47062 * 60.00178 * 12 2 1 14 14 O 1.42104 * 110.54232 * 291.62524 * 13 12 2 15 15 O 1.42103 * 110.54443 * 68.37296 * 13 12 2 16 16 N 1.65593 * 104.45132 * 179.97438 * 13 12 2 17 17 C 1.46504 * 119.99798 * 64.17164 * 16 13 12 18 18 C 1.53003 * 115.55014 * 38.61826 * 17 16 13 19 19 C 1.52997 * 117.49962 * 252.90920 * 17 16 13 20 20 C 1.52997 * 60.00172 * 252.50819 * 19 17 16 21 21 C 1.52991 * 117.50386 * 252.50845 * 20 19 17 22 22 C 1.53002 * 117.51623 * 107.47978 * 20 19 17 23 23 H 1.09003 * 109.47450 * 300.00195 * 1 2 3 24 24 H 1.09000 * 109.46935 * 59.99878 * 1 2 3 25 25 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46921 * 186.71705 * 3 2 1 27 27 H 1.08995 * 109.47141 * 306.72285 * 3 2 1 28 28 H 1.09004 * 109.46856 * 66.72315 * 3 2 1 29 29 H 0.96992 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47016 * 180.02562 * 12 2 1 31 31 H 1.08999 * 109.47313 * 300.00300 * 12 2 1 32 32 H 0.96997 * 120.00771 * 244.17290 * 16 13 12 33 33 H 1.08997 * 109.46788 * 60.75755 * 18 17 16 34 34 H 1.08997 * 109.47168 * 180.75332 * 18 17 16 35 35 H 1.08998 * 109.46884 * 300.76345 * 18 17 16 36 36 H 1.08996 * 117.50212 * 0.02562 * 19 17 16 37 37 H 1.09000 * 117.49672 * 145.02108 * 19 17 16 38 38 H 1.09003 * 109.47410 * 128.61963 * 21 20 19 39 39 H 1.09004 * 109.47702 * 248.62140 * 21 20 19 40 40 H 1.09008 * 109.47070 * 8.62472 * 21 20 19 41 41 H 1.09004 * 109.47014 * 351.37306 * 22 20 19 42 42 H 1.08999 * 109.47144 * 111.37256 * 22 20 19 43 43 H 1.09004 * 109.47355 * 231.37766 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6184 -1.6121 1.1320 6 6 1.7436 -0.2092 2.4820 7 7 0.9282 0.8149 2.6083 8 14 2.5105 -0.9849 3.9986 9 1 3.8545 -0.3969 4.2293 10 1 1.6471 -0.7243 5.1782 11 1 2.6396 -2.4500 3.7936 12 6 2.0400 -0.7213 -1.2492 13 16 1.4354 0.1339 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0480 1.4101 -2.8544 16 7 2.0541 -0.7399 -3.9936 17 6 1.6390 -2.1304 -4.1952 18 6 0.1623 -2.4243 -3.9233 19 6 2.6519 -3.2261 -3.8570 20 6 2.3204 -2.9154 -5.3179 21 6 1.4732 -3.9344 -6.0824 22 6 3.3828 -2.1879 -6.1445 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1233 1.4448 -0.1202 27 1 1.5818 1.9899 -0.8237 28 1 1.7782 1.9204 0.9441 29 1 0.7248 1.1673 3.4887 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 2.6913 -0.3313 -4.6000 33 1 -0.4562 -1.8300 -4.5958 34 1 -0.0340 -3.4835 -4.0899 35 1 -0.0747 -2.1688 -2.8905 36 1 3.6268 -2.9126 -3.4840 37 1 2.2663 -4.1567 -3.4404 38 1 0.6326 -3.4265 -6.5552 39 1 2.0842 -4.4145 -6.8469 40 1 1.0991 -4.6884 -5.3898 41 1 4.1909 -1.8606 -5.4903 42 1 3.7796 -2.8639 -6.9019 43 1 2.9347 -1.3209 -6.6300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595361286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = -80.085966 kcal Electronic energy + Delta-G solvation = -22972.512677 eV Core-core repulsion = 19758.639358 eV Total energy + Delta-G solvation = -3213.873319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.27114 -38.12786 -38.08153 -36.87532 -34.00329 -33.62764 -30.81073 -28.76461 -28.31714 -27.70707 -27.65035 -27.24034 -22.24976 -21.31195 -20.21006 -19.72281 -18.69593 -17.86645 -17.16888 -16.90363 -16.60907 -16.17332 -15.48765 -14.93220 -14.81598 -14.71368 -14.42327 -14.30307 -13.93880 -13.75428 -13.62213 -13.38712 -13.14264 -13.10397 -12.90476 -12.80114 -12.78816 -12.57506 -12.50993 -12.39009 -12.21848 -12.12572 -12.10910 -11.88144 -11.75945 -11.56902 -11.28652 -10.64207 -10.48905 -10.38444 -9.86849 -8.02917 -6.20913 -0.59191 1.44748 1.46418 1.54409 1.85515 2.44732 2.68519 2.85594 3.19162 3.36247 3.62374 3.76844 3.87630 3.96727 4.12679 4.20237 4.23701 4.59038 4.71198 4.80994 4.83079 4.85354 4.87569 4.94691 4.98529 5.00365 5.08193 5.08332 5.10060 5.11484 5.23704 5.32371 5.38780 5.43173 5.49538 5.54524 5.64878 5.97053 6.09286 6.12246 6.35179 6.83404 7.47044 8.96903 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.005126 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.796970 B = 5461.519483 C = 5904.574065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 C -0.158 4.158 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.267 1.267 12 C -0.580 4.580 13 S 2.613 3.387 14 O -0.980 6.980 15 O -0.999 6.999 16 N -1.081 6.081 17 C 0.081 3.919 18 C -0.135 4.135 19 C -0.181 4.181 20 C -0.103 4.103 21 C -0.117 4.117 22 C -0.126 4.126 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.261 0.739 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.420 0.580 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -10.136 -16.007 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 C -0.216 4.216 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.192 1.192 12 C -0.713 4.713 13 S 2.711 3.289 14 O -0.970 6.970 15 O -0.989 6.989 16 N -0.839 5.839 17 C -0.008 4.008 18 C -0.193 4.193 19 C -0.220 4.220 20 C -0.105 4.105 21 C -0.174 4.174 22 C -0.183 4.183 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.080 -9.284 -15.869 18.642 hybrid contribution 0.884 -0.135 1.197 1.494 sum 3.964 -9.418 -14.672 17.880 Atomic orbital electron populations 1.22210 0.97540 1.00496 1.01302 1.17916 0.92498 0.91874 0.90886 1.22155 0.99306 0.98386 1.01727 1.21268 1.33447 1.10457 0.90368 0.91901 1.25664 0.95155 0.95690 1.01571 1.69949 1.34893 1.25842 1.23887 0.85645 0.78299 0.79077 0.79052 1.20311 1.21321 1.19173 1.30431 1.12166 1.13304 1.15393 1.04768 0.74504 0.73836 0.75781 1.93524 1.31231 1.86521 1.85751 1.93503 1.78685 1.40323 1.86420 1.54897 1.61522 1.22492 1.45013 1.20859 0.93556 0.78909 1.07491 1.21778 0.91356 1.03423 1.02754 1.24010 1.00368 0.99805 0.97787 1.22045 0.99263 0.99054 0.90131 1.21456 0.99097 0.96853 1.00043 1.21439 0.96707 1.00405 0.99737 0.91039 0.94933 0.94083 0.94114 0.95495 0.90978 0.92917 0.84956 0.84691 0.74354 0.91747 0.88396 0.92413 0.87931 0.86568 0.91911 0.90422 0.91285 0.92078 0.89963 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.80 71.98 0.56 -7.29 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 3 C -0.16 -7.95 7.58 71.98 0.55 -7.41 16 4 C -0.52 -26.87 8.01 25.60 0.20 -26.67 16 5 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 6 C 0.02 0.99 5.09 84.65 0.43 1.42 16 7 N -0.91 -50.33 9.38 21.45 0.20 -50.13 16 8 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 C -0.58 -22.28 4.99 71.98 0.36 -21.92 16 13 S 2.61 96.79 4.26 -56.49 -0.24 96.55 16 14 O -0.98 -40.34 12.57 -127.65 -1.60 -41.94 16 15 O -1.00 -42.72 15.84 -127.65 -2.02 -44.74 16 16 N -1.08 -29.42 5.85 -152.20 -0.89 -30.31 16 17 C 0.08 1.90 2.92 3.60 0.01 1.91 16 18 C -0.14 -3.38 7.78 71.98 0.56 -2.82 16 19 C -0.18 -3.40 9.46 30.59 0.29 -3.11 16 20 C -0.10 -1.75 2.70 -52.18 -0.14 -1.90 16 21 C -0.12 -1.55 8.66 71.98 0.62 -0.92 16 22 C -0.13 -1.86 8.64 71.98 0.62 -1.23 16 23 H 0.07 3.90 6.04 -2.39 -0.01 3.89 16 24 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.30 5.96 -2.39 -0.01 1.29 16 28 H 0.07 3.95 5.96 -2.39 -0.01 3.93 16 29 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 31 H 0.13 4.67 8.14 -2.39 -0.02 4.65 16 32 H 0.42 9.82 7.51 -96.75 -0.73 9.09 16 33 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 34 H 0.10 1.81 6.76 -2.39 -0.02 1.80 16 35 H 0.06 1.71 6.52 -2.39 -0.02 1.70 16 36 H 0.10 1.90 8.05 -2.39 -0.02 1.88 16 37 H 0.12 1.88 8.05 -2.39 -0.02 1.87 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.79 7.92 -2.39 -0.02 0.77 16 40 H 0.07 0.82 7.23 -2.38 -0.02 0.80 16 41 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 42 H 0.08 0.93 7.92 -2.39 -0.02 0.91 16 43 H 0.06 0.92 8.00 -2.38 -0.02 0.90 16 Total: -1.00 -65.70 336.97 1.77 -63.92 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.27 Total: 29.17 kcal Atomic # 6 Polarization: -70.61 SS G_CDS: 4.04 Total: -66.57 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -0.69 Total: -80.44 kcal Atomic # 8 Polarization: -83.06 SS G_CDS: -3.63 Total: -86.68 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 96.79 SS G_CDS: -0.24 Total: 96.55 kcal Total: -65.70 1.77 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595361286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.164 kcal (2) G-P(sol) polarization free energy of solvation -65.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds