Wall clock time and date at job start Tue Mar 31 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99574 * 2 1 4 4 C 1.52997 * 109.47341 * 275.00029 * 3 2 1 5 5 H 1.08998 * 115.54924 * 330.58597 * 4 3 2 6 6 C 1.52994 * 117.50001 * 116.25850 * 4 3 2 7 7 C 1.53002 * 117.50066 * 184.91753 * 4 3 2 8 8 C 1.53003 * 117.49686 * 359.97438 * 7 4 3 9 9 C 1.53001 * 117.49874 * 145.02139 * 7 4 3 10 10 S 1.65599 * 120.00054 * 180.02562 * 2 1 3 11 11 O 1.42105 * 104.27655 * 153.92607 * 10 2 1 12 12 O 1.42101 * 104.27764 * 26.07044 * 10 2 1 13 13 C 1.81395 * 104.44748 * 269.99913 * 10 2 1 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 2 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 10 16 16 C 1.50706 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00265 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99848 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99718 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99932 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47153 * 90.00505 * 20 18 16 22 22 H 1.48497 * 109.46916 * 210.00621 * 20 18 16 23 23 H 1.48506 * 109.47238 * 330.00226 * 20 18 16 24 24 H 1.08994 * 109.47028 * 269.99818 * 1 2 3 25 25 H 1.08993 * 109.47216 * 29.99966 * 1 2 3 26 26 H 1.08996 * 109.46988 * 149.99764 * 1 2 3 27 27 H 1.08995 * 109.47675 * 35.00479 * 3 2 1 28 28 H 1.09001 * 109.46819 * 155.00490 * 3 2 1 29 29 H 1.09001 * 117.50071 * 214.98494 * 6 4 3 30 30 H 1.09002 * 117.50141 * 359.97227 * 6 4 3 31 31 H 1.08999 * 109.46835 * 60.00327 * 8 7 4 32 32 H 1.09004 * 109.46577 * 180.02562 * 8 7 4 33 33 H 1.08994 * 109.47201 * 300.00286 * 8 7 4 34 34 H 1.08997 * 109.47433 * 59.99984 * 9 7 4 35 35 H 1.09004 * 109.46673 * 180.02562 * 9 7 4 36 36 H 1.09001 * 109.47413 * 299.99680 * 9 7 4 37 37 H 1.09003 * 109.47393 * 299.99669 * 13 10 2 38 38 H 1.08994 * 109.47678 * 60.00285 * 13 10 2 39 39 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 40 40 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 41 41 H 1.09003 * 109.47218 * 299.99466 * 15 14 13 42 42 H 1.08995 * 109.47220 * 59.99596 * 15 14 13 43 43 H 0.97010 * 119.99674 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3435 1.7734 -1.4370 5 1 2.3798 1.0009 -2.2051 6 6 1.6591 3.0940 -1.7950 7 6 3.1827 3.0328 -1.6616 8 6 3.8111 3.6917 -0.4319 9 6 4.0081 3.1118 -2.9475 10 16 2.2930 -1.4341 -0.0006 11 8 3.5395 -1.1188 -0.6058 12 8 1.3970 -2.3559 -0.6063 13 6 2.5194 -1.8268 1.7558 14 6 3.2820 -3.1465 1.8891 15 6 3.4723 -3.4781 3.3706 16 6 4.2241 -4.7777 3.5019 17 1 4.5346 -5.3137 2.6172 18 6 4.5145 -5.2828 4.7515 19 7 5.1701 -6.4171 4.8661 20 14 3.9768 -4.3561 6.2817 21 1 2.6222 -4.8113 6.6856 22 1 4.9368 -4.6203 7.3833 23 1 3.9439 -2.8998 5.9925 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6502 2.0043 0.5895 28 1 3.1857 1.1177 0.4342 29 1 1.2452 3.1905 -2.7988 30 1 1.1043 3.6032 -1.0069 31 1 4.4797 2.9836 0.0578 32 1 4.3757 4.5717 -0.7400 33 1 3.0253 3.9891 0.2623 34 1 3.3441 3.0505 -3.8098 35 1 4.5513 4.0565 -2.9731 36 1 4.7172 2.2845 -2.9755 37 1 3.0867 -1.0297 2.2362 38 1 1.5453 -1.9197 2.2358 39 1 2.7151 -3.9439 1.4087 40 1 4.2562 -3.0533 1.4092 41 1 4.0391 -2.6808 3.8515 42 1 2.4980 -3.5714 3.8501 43 1 5.3747 -6.7724 5.7453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595410982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:15 Heat of formation + Delta-G solvation = -65.106004 kcal Electronic energy + Delta-G solvation = -21516.637537 eV Core-core repulsion = 18303.413798 eV Total energy + Delta-G solvation = -3213.223739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.15221 -36.98293 -35.98361 -35.64847 -34.80485 -32.21589 -29.96596 -28.38240 -28.21678 -27.43983 -24.91865 -23.48395 -21.54597 -20.43203 -19.03746 -18.70827 -17.49649 -16.91445 -16.56174 -16.03436 -15.41464 -14.96343 -14.56033 -14.20992 -14.12782 -13.86151 -13.80650 -13.34727 -12.92292 -12.74763 -12.62398 -12.39116 -12.34483 -12.24155 -12.13312 -11.89270 -11.75069 -11.66373 -11.59932 -11.49569 -11.34997 -10.98174 -10.95144 -10.10182 -10.06205 -9.90467 -9.85344 -9.69336 -9.28456 -9.01440 -8.59269 -6.08869 -4.08133 0.37149 2.67432 3.26103 3.33639 3.35714 3.47710 3.94754 4.23192 4.34007 4.39875 4.48460 4.51155 4.74057 4.84297 5.03257 5.05413 5.18059 5.21810 5.24916 5.31837 5.37464 5.42795 5.49474 5.57206 5.66453 5.67174 5.70048 5.70665 5.75360 5.86683 5.94436 5.99488 6.11302 6.13898 6.26366 6.45825 6.66590 7.12082 7.26108 7.70581 8.47294 8.95612 9.52247 11.04455 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.003506 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.479255 B = 7984.286909 C = 8270.466562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.005 6.005 3 C 0.157 3.843 4 C -0.158 4.158 5 H 0.108 0.892 6 C -0.173 4.173 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.117 4.117 10 S 2.598 3.402 11 O -0.953 6.953 12 O -0.958 6.958 13 C -0.616 4.616 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 22.224 -10.911 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.841 5.841 3 C 0.031 3.969 4 C -0.178 4.178 5 H 0.126 0.874 6 C -0.210 4.210 7 C -0.123 4.123 8 C -0.176 4.176 9 C -0.174 4.174 10 S 2.694 3.306 11 O -0.943 6.943 12 O -0.949 6.949 13 C -0.748 4.748 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.442 21.651 -11.564 25.957 hybrid contribution -0.439 0.556 1.576 1.728 sum -8.881 22.207 -9.988 25.919 Atomic orbital electron populations 1.21556 0.78606 1.04193 1.01791 1.57563 1.15156 1.21262 1.90164 1.20788 0.96439 0.85066 0.94610 1.22934 1.04525 0.91518 0.98816 0.87394 1.23345 0.94417 1.00614 1.02608 1.21585 0.92396 1.00667 0.97651 1.21387 1.00580 1.00168 0.95509 1.21367 0.99409 1.02100 0.94490 1.05495 0.73885 0.72888 0.78381 1.93584 1.43855 1.82736 1.74133 1.93557 1.64753 1.62213 1.74348 1.30645 1.10484 1.09363 1.24261 1.21315 0.98781 0.90806 1.02798 1.19531 0.96837 0.97624 0.90298 1.21140 1.35916 1.05096 0.94365 0.90718 1.25026 0.94586 0.94741 0.99062 1.69913 1.40371 1.19586 1.24016 0.86774 0.78674 0.80900 0.82904 1.20213 1.21243 1.19064 0.92844 0.90855 0.89809 0.90320 0.89541 0.89016 0.88844 0.91716 0.92064 0.92405 0.92607 0.92165 0.91777 0.85548 0.85491 0.91036 0.90976 0.96192 0.96625 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.66 59.85 0.64 1.38 16 2 N -1.01 -11.06 3.12 -121.76 -0.38 -11.44 16 3 C 0.16 1.52 4.60 -4.04 -0.02 1.50 16 4 C -0.16 -1.58 5.73 -90.62 -0.52 -2.10 16 5 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 6 C -0.17 -1.36 9.47 -26.70 -0.25 -1.62 16 7 C -0.12 -1.07 2.70 -154.47 -0.42 -1.48 16 8 C -0.12 -0.90 8.86 37.16 0.33 -0.57 16 9 C -0.12 -0.97 9.85 37.16 0.37 -0.60 16 10 S 2.60 38.00 5.37 -107.50 -0.58 37.42 16 11 O -0.95 -16.34 16.99 -57.54 -0.98 -17.31 16 12 O -0.96 -16.63 16.57 -57.54 -0.95 -17.58 16 13 C -0.62 -9.06 6.18 37.16 0.23 -8.83 16 14 C -0.10 -1.92 5.16 -26.73 -0.14 -2.06 16 15 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.08 0.83 6.91 -51.93 -0.36 0.47 16 27 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 28 H 0.09 0.85 7.24 -51.93 -0.38 0.48 16 29 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 31 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 32 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 33 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.06 0.43 7.92 -51.93 -0.41 0.01 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.13 1.61 8.14 -51.92 -0.42 1.18 16 38 H 0.13 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -34.58 360.21 -9.43 -44.02 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.75 Total: -2.16 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -0.33 Total: -28.14 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.44 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.93 Total: -34.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.58 Total: 37.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.58 -9.43 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.090 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds