Wall clock time and date at job start Tue Mar 31 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 120.00048 * 2 1 4 4 C 1.53002 * 109.47114 * 275.00073 * 3 2 1 5 5 H 1.09003 * 115.54864 * 29.32788 * 4 3 2 6 6 C 1.53000 * 117.50035 * 243.62234 * 4 3 2 7 7 C 1.52992 * 117.49756 * 174.99982 * 4 3 2 8 8 C 1.53002 * 117.49907 * 214.97617 * 7 4 3 9 9 C 1.53000 * 117.49999 * 359.97438 * 7 4 3 10 10 S 1.65601 * 119.99902 * 180.02562 * 2 1 3 11 11 O 1.42097 * 104.27967 * 333.92917 * 10 2 1 12 12 O 1.42096 * 104.27550 * 206.06760 * 10 2 1 13 13 C 1.81409 * 104.44945 * 90.00201 * 10 2 1 14 14 C 1.52999 * 109.46821 * 180.02562 * 13 10 2 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47162 * 120.00342 * 20 18 16 23 23 H 1.48501 * 109.47494 * 240.00320 * 20 18 16 24 24 H 1.09004 * 109.47267 * 269.99896 * 1 2 3 25 25 H 1.09007 * 109.47416 * 29.99897 * 1 2 3 26 26 H 1.09003 * 109.47502 * 149.99454 * 1 2 3 27 27 H 1.08994 * 109.46580 * 35.00128 * 3 2 1 28 28 H 1.09001 * 109.46975 * 155.00089 * 3 2 1 29 29 H 1.09004 * 117.49811 * 0.02562 * 6 4 3 30 30 H 1.08999 * 117.49903 * 145.01655 * 6 4 3 31 31 H 1.09007 * 109.46929 * 60.00252 * 8 7 4 32 32 H 1.08998 * 109.47615 * 179.97438 * 8 7 4 33 33 H 1.08994 * 109.47495 * 300.00712 * 8 7 4 34 34 H 1.09005 * 109.46664 * 60.00796 * 9 7 4 35 35 H 1.09006 * 109.46980 * 179.97438 * 9 7 4 36 36 H 1.08988 * 109.47319 * 300.00157 * 9 7 4 37 37 H 1.08993 * 109.47018 * 59.99567 * 13 10 2 38 38 H 1.09000 * 109.46792 * 299.99857 * 13 10 2 39 39 H 1.08993 * 109.47839 * 59.99872 * 14 13 10 40 40 H 1.09000 * 109.47160 * 299.99434 * 14 13 10 41 41 H 1.09000 * 109.47050 * 299.99699 * 15 14 13 42 42 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 43 43 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 1.5471 1.4807 -2.1213 6 6 3.7594 1.8842 -2.0063 7 6 2.9803 3.1494 -1.6412 8 6 2.4509 4.0092 -2.7907 9 6 3.4217 3.9159 -0.3928 10 16 2.2929 -1.4342 -0.0006 11 8 1.3969 -2.3564 0.6041 12 8 3.5394 -1.1194 0.6046 13 6 2.5193 -1.8254 -1.7575 14 6 3.2808 -3.1456 -1.8920 15 6 3.4711 -3.4758 -3.3738 16 6 4.2217 -4.7758 -3.5063 17 1 4.5323 -5.3126 -2.6220 18 6 4.5119 -5.2801 -4.7562 19 7 4.1342 -4.6262 -5.8331 20 14 5.4429 -6.8911 -4.9205 21 1 5.7517 -7.4244 -3.5694 22 1 4.6086 -7.8717 -5.6604 23 1 6.7082 -6.6583 -5.6623 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6501 2.0042 0.5894 28 1 3.1857 1.1177 0.4343 29 1 4.5868 1.5973 -1.3572 30 1 3.8947 1.6644 -3.0653 31 1 1.3887 4.2028 -2.6403 32 1 2.9921 4.9550 -2.8162 33 1 2.5940 3.4827 -3.7342 34 1 4.1662 3.3315 0.1480 35 1 3.8548 4.8718 -0.6876 36 1 2.5593 4.0902 0.2503 37 1 3.0865 -1.0278 -2.2372 38 1 1.5451 -1.9177 -2.2376 39 1 2.7132 -3.9430 -1.4124 40 1 4.2550 -3.0536 -1.4118 41 1 2.4967 -3.5679 -3.8536 42 1 4.0386 -2.6784 -3.8537 43 1 4.3380 -4.9810 -6.7124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595410983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:18 Heat of formation + Delta-G solvation = -70.368218 kcal Electronic energy + Delta-G solvation = -21770.455469 eV Core-core repulsion = 18557.003543 eV Total energy + Delta-G solvation = -3213.451926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.10126 -36.91608 -35.93540 -35.59457 -34.64188 -32.17174 -29.96426 -28.12532 -27.78021 -27.29364 -25.03577 -23.63678 -21.27636 -20.50968 -18.91176 -18.75590 -17.56043 -16.63197 -16.35606 -15.81254 -15.20015 -14.92164 -14.59165 -14.46829 -14.08433 -13.80320 -13.66936 -13.22954 -12.71491 -12.60172 -12.57077 -12.34047 -12.26482 -12.20594 -11.92255 -11.74927 -11.67114 -11.59578 -11.50572 -11.30013 -11.20740 -10.93128 -10.82077 -10.40504 -9.99900 -9.93290 -9.82886 -9.44960 -9.19558 -8.89566 -8.40602 -6.05383 -4.08222 0.47504 2.72948 3.29571 3.37104 3.42176 3.52004 4.01978 4.30338 4.42736 4.47862 4.50168 4.67391 4.75304 4.89264 5.13822 5.19817 5.21423 5.30403 5.31289 5.36783 5.41005 5.44742 5.62167 5.67428 5.70436 5.72865 5.73405 5.81888 5.88499 5.93330 5.95343 6.12059 6.17273 6.27528 6.47578 6.51811 6.88782 7.58071 7.68029 7.92984 8.33667 8.98284 9.56525 11.05893 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004105 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.679555 B = 6820.019210 C = 7826.891909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.005 6.005 3 C 0.147 3.853 4 C -0.177 4.177 5 H 0.111 0.889 6 C -0.174 4.174 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.119 4.119 10 S 2.597 3.403 11 O -0.961 6.961 12 O -0.960 6.960 13 C -0.607 4.607 14 C -0.105 4.105 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 18.141 9.217 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.841 5.841 3 C 0.021 3.979 4 C -0.197 4.197 5 H 0.129 0.871 6 C -0.211 4.211 7 C -0.123 4.123 8 C -0.172 4.172 9 C -0.176 4.176 10 S 2.693 3.307 11 O -0.952 6.952 12 O -0.951 6.951 13 C -0.739 4.739 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.202 17.693 9.860 21.183 hybrid contribution 0.292 -0.671 -1.111 1.330 sum -5.910 17.021 8.749 20.030 Atomic orbital electron populations 1.21427 0.78597 1.02900 1.02101 1.57545 1.14958 1.21413 1.90163 1.20938 0.97804 0.84813 0.94330 1.23108 0.97623 1.00295 0.98640 0.87112 1.23479 0.94492 1.00696 1.02417 1.21550 1.03656 0.88952 0.98105 1.21358 1.00613 0.98992 0.96249 1.21379 1.00972 0.99765 0.95448 1.05497 0.73734 0.72787 0.78637 1.93560 1.64742 1.62212 1.74644 1.93537 1.44011 1.82853 1.74687 1.30576 1.10520 1.09424 1.23370 1.21495 0.98145 0.90626 1.04203 1.19059 0.97367 0.96757 0.87534 1.21300 1.36074 1.06565 0.92395 0.92328 1.25017 0.95924 0.97538 0.95895 1.69969 1.46847 1.38926 0.97713 0.86507 0.79590 0.83524 0.78247 1.19586 1.20952 1.20938 0.92527 0.91156 0.91024 0.89895 0.88593 0.88072 0.88276 0.92365 0.92160 0.92280 0.92053 0.92114 0.92208 0.85304 0.85638 0.91706 0.91649 0.96170 0.96122 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 10.22 59.84 0.61 1.51 16 2 N -1.00 -11.82 3.12 -121.75 -0.38 -12.20 16 3 C 0.15 1.51 5.00 -4.04 -0.02 1.49 16 4 C -0.18 -1.73 5.73 -90.62 -0.52 -2.25 16 5 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.17 -1.82 9.47 -26.73 -0.25 -2.07 16 7 C -0.12 -1.07 2.70 -154.51 -0.42 -1.49 16 8 C -0.11 -0.90 9.85 37.16 0.37 -0.54 16 9 C -0.12 -0.90 8.86 37.16 0.33 -0.57 16 10 S 2.60 40.38 5.38 -107.50 -0.58 39.80 16 11 O -0.96 -17.50 17.09 -57.54 -0.98 -18.48 16 12 O -0.96 -17.19 16.53 -57.54 -0.95 -18.14 16 13 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 14 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 15 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 26 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 27 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 28 H 0.10 1.09 6.55 -51.93 -0.34 0.75 16 29 H 0.10 1.09 7.94 -51.93 -0.41 0.68 16 30 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 34 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 35 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 36 H 0.06 0.40 7.83 -51.94 -0.41 0.00 16 37 H 0.13 1.90 8.14 -51.93 -0.42 1.47 16 38 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -33.85 363.90 -9.85 -43.69 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.79 Total: -2.17 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -0.36 Total: -28.72 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.36 Total: -38.11 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.93 Total: -36.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 40.38 SS G_CDS: -0.58 Total: 39.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.85 -9.85 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.673 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds