Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 120.00048 * 2 1 4 4 C 1.53002 * 109.47114 * 275.00073 * 3 2 1 5 5 H 1.09003 * 115.54864 * 29.32788 * 4 3 2 6 6 C 1.53000 * 117.50035 * 243.62234 * 4 3 2 7 7 C 1.52992 * 117.49756 * 174.99982 * 4 3 2 8 8 C 1.53002 * 117.49907 * 214.97617 * 7 4 3 9 9 C 1.53000 * 117.49999 * 359.97438 * 7 4 3 10 10 S 1.65601 * 119.99902 * 180.02562 * 2 1 3 11 11 O 1.42097 * 104.27967 * 333.92917 * 10 2 1 12 12 O 1.42096 * 104.27550 * 206.06760 * 10 2 1 13 13 C 1.81409 * 104.44945 * 90.00201 * 10 2 1 14 14 C 1.52999 * 109.46821 * 180.02562 * 13 10 2 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47162 * 120.00342 * 20 18 16 23 23 H 1.48501 * 109.47494 * 240.00320 * 20 18 16 24 24 H 1.09004 * 109.47267 * 269.99896 * 1 2 3 25 25 H 1.09007 * 109.47416 * 29.99897 * 1 2 3 26 26 H 1.09003 * 109.47502 * 149.99454 * 1 2 3 27 27 H 1.08994 * 109.46580 * 35.00128 * 3 2 1 28 28 H 1.09001 * 109.46975 * 155.00089 * 3 2 1 29 29 H 1.09004 * 117.49811 * 0.02562 * 6 4 3 30 30 H 1.08999 * 117.49903 * 145.01655 * 6 4 3 31 31 H 1.09007 * 109.46929 * 60.00252 * 8 7 4 32 32 H 1.08998 * 109.47615 * 179.97438 * 8 7 4 33 33 H 1.08994 * 109.47495 * 300.00712 * 8 7 4 34 34 H 1.09005 * 109.46664 * 60.00796 * 9 7 4 35 35 H 1.09006 * 109.46980 * 179.97438 * 9 7 4 36 36 H 1.08988 * 109.47319 * 300.00157 * 9 7 4 37 37 H 1.08993 * 109.47018 * 59.99567 * 13 10 2 38 38 H 1.09000 * 109.46792 * 299.99857 * 13 10 2 39 39 H 1.08993 * 109.47839 * 59.99872 * 14 13 10 40 40 H 1.09000 * 109.47160 * 299.99434 * 14 13 10 41 41 H 1.09000 * 109.47050 * 299.99699 * 15 14 13 42 42 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 43 43 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 1.5471 1.4807 -2.1213 6 6 3.7594 1.8842 -2.0063 7 6 2.9803 3.1494 -1.6412 8 6 2.4509 4.0092 -2.7907 9 6 3.4217 3.9159 -0.3928 10 16 2.2929 -1.4342 -0.0006 11 8 1.3969 -2.3564 0.6041 12 8 3.5394 -1.1194 0.6046 13 6 2.5193 -1.8254 -1.7575 14 6 3.2808 -3.1456 -1.8920 15 6 3.4711 -3.4758 -3.3738 16 6 4.2217 -4.7758 -3.5063 17 1 4.5323 -5.3126 -2.6220 18 6 4.5119 -5.2801 -4.7562 19 7 4.1342 -4.6262 -5.8331 20 14 5.4429 -6.8911 -4.9205 21 1 5.7517 -7.4244 -3.5694 22 1 4.6086 -7.8717 -5.6604 23 1 6.7082 -6.6583 -5.6623 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6501 2.0042 0.5894 28 1 3.1857 1.1177 0.4343 29 1 4.5868 1.5973 -1.3572 30 1 3.8947 1.6644 -3.0653 31 1 1.3887 4.2028 -2.6403 32 1 2.9921 4.9550 -2.8162 33 1 2.5940 3.4827 -3.7342 34 1 4.1662 3.3315 0.1480 35 1 3.8548 4.8718 -0.6876 36 1 2.5593 4.0902 0.2503 37 1 3.0865 -1.0278 -2.2372 38 1 1.5451 -1.9177 -2.2376 39 1 2.7132 -3.9430 -1.4124 40 1 4.2550 -3.0536 -1.4118 41 1 2.4967 -3.5679 -3.8536 42 1 4.0386 -2.6784 -3.8537 43 1 4.3380 -4.9810 -6.7124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595410983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = -91.665797 kcal Electronic energy + Delta-G solvation = -21771.379001 eV Core-core repulsion = 18557.003543 eV Total energy + Delta-G solvation = -3214.375458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86288 -38.25890 -37.13826 -36.65906 -36.45558 -34.17824 -30.67209 -29.67780 -28.78005 -27.98655 -26.04899 -25.45099 -22.46511 -21.94523 -19.96318 -19.59126 -18.77681 -18.53856 -17.48853 -17.27124 -16.50264 -16.29843 -15.81654 -15.67039 -15.19287 -14.54977 -14.52218 -14.38566 -14.15994 -14.01950 -13.56448 -13.54922 -13.30309 -13.22138 -13.14731 -13.01711 -12.94917 -12.78758 -12.63203 -12.62085 -12.49426 -12.41004 -12.15622 -11.96219 -11.78347 -11.38914 -11.12748 -10.73225 -10.59305 -10.51778 -9.91213 -8.23949 -6.35127 -0.78370 1.38850 1.39439 1.52899 1.63547 2.38912 2.74737 2.76565 3.09495 3.11807 3.61004 3.71134 3.80988 3.88688 3.93734 4.02635 4.23740 4.35505 4.36479 4.58015 4.59574 4.63293 4.76253 4.84114 4.89915 4.92442 4.98986 4.99924 5.00703 5.06187 5.10869 5.13357 5.15178 5.32043 5.33705 5.43435 5.52839 5.60006 5.64236 5.77679 6.18148 6.80310 7.34356 8.87789 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004105 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.679555 B = 6820.019210 C = 7826.891909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.996 5.996 3 C 0.143 3.857 4 C -0.177 4.177 5 H 0.115 0.885 6 C -0.198 4.198 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.121 4.121 10 S 2.619 3.381 11 O -0.987 6.987 12 O -0.986 6.986 13 C -0.607 4.607 14 C -0.105 4.105 15 C 0.033 3.967 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 19.143 9.856 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.834 5.834 3 C 0.018 3.982 4 C -0.197 4.197 5 H 0.133 0.867 6 C -0.235 4.235 7 C -0.108 4.108 8 C -0.173 4.173 9 C -0.178 4.178 10 S 2.715 3.285 11 O -0.977 6.977 12 O -0.976 6.976 13 C -0.738 4.738 14 C -0.144 4.144 15 C -0.005 4.005 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.933 18.689 10.498 22.529 hybrid contribution 0.484 -0.895 -1.314 1.662 sum -6.449 17.794 9.183 21.037 Atomic orbital electron populations 1.21732 0.76719 1.04436 1.03175 1.57248 1.16004 1.20413 1.89720 1.21115 0.97554 0.84447 0.95041 1.23103 0.96997 1.01298 0.98276 0.86666 1.23492 0.94956 1.03167 1.01840 1.21660 1.01861 0.88483 0.98756 1.21389 1.01419 0.99071 0.95401 1.21432 1.01478 0.99882 0.94985 1.04600 0.73062 0.73210 0.77653 1.93522 1.65292 1.63939 1.74989 1.93501 1.45641 1.83440 1.75029 1.30543 1.10929 1.07206 1.25126 1.21305 0.99042 0.93301 1.00756 1.18945 0.95698 0.95362 0.90537 1.21761 1.36649 1.07839 0.92783 0.92219 1.25930 0.96753 1.01263 0.95513 1.70079 1.47863 1.40711 0.98294 0.85423 0.78298 0.78974 0.78538 1.18798 1.20136 1.20162 0.91752 0.88128 0.91074 0.87051 0.89845 0.89019 0.89123 0.91249 0.91195 0.93061 0.92663 0.91168 0.90794 0.84234 0.83924 0.91647 0.91751 0.97898 0.97975 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.22 127.77 1.31 2.67 16 2 N -1.00 -21.56 3.12 -539.11 -1.68 -23.24 16 3 C 0.14 2.67 5.00 86.38 0.43 3.10 16 4 C -0.18 -3.17 5.73 -10.80 -0.06 -3.23 16 5 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 6 C -0.20 -4.10 9.47 30.59 0.29 -3.81 16 7 C -0.11 -1.69 2.70 -52.18 -0.14 -1.84 16 8 C -0.12 -1.58 9.85 71.98 0.71 -0.87 16 9 C -0.12 -1.57 8.86 71.98 0.64 -0.94 16 10 S 2.62 79.78 5.38 -56.49 -0.30 79.48 16 11 O -0.99 -35.29 17.09 -127.65 -2.18 -37.47 16 12 O -0.99 -35.12 16.53 -127.65 -2.11 -37.23 16 13 C -0.61 -19.37 6.18 71.98 0.44 -18.93 16 14 C -0.10 -4.41 5.16 30.60 0.16 -4.25 16 15 C 0.03 1.72 4.97 29.85 0.15 1.87 16 16 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 20 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.10 1.05 8.07 -2.38 -0.02 1.03 16 26 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 27 H 0.11 1.48 7.73 -2.39 -0.02 1.47 16 28 H 0.08 1.81 6.55 -2.39 -0.02 1.79 16 29 H 0.09 2.04 7.94 -2.39 -0.02 2.02 16 30 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 0.82 7.92 -2.39 -0.02 0.81 16 33 H 0.05 0.78 7.90 -2.39 -0.02 0.76 16 34 H 0.05 0.79 7.90 -2.38 -0.02 0.78 16 35 H 0.07 0.79 7.92 -2.38 -0.02 0.77 16 36 H 0.07 0.77 7.83 -2.39 -0.02 0.75 16 37 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 38 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 39 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -72.70 363.90 1.60 -71.10 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.95 Total: 13.75 kcal Atomic # 6 Polarization: -61.78 SS G_CDS: 4.62 Total: -57.17 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.39 Total: -78.99 kcal Atomic # 8 Polarization: -70.41 SS G_CDS: -4.29 Total: -74.70 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 79.78 SS G_CDS: -0.30 Total: 79.48 kcal Total: -72.70 1.60 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595410983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.563 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds