Wall clock time and date at job start Tue Mar 31 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21290 * 120.00046 * 2 1 4 4 N 1.34780 * 119.99877 * 180.02562 * 2 1 3 5 5 C 1.40133 * 119.99753 * 185.74128 * 4 2 1 6 6 C 1.38718 * 120.09217 * 19.30252 * 5 4 2 7 7 C 1.38197 * 119.98356 * 180.27648 * 6 5 4 8 8 C 1.38273 * 120.16450 * 359.74573 * 7 6 5 9 9 C 1.50698 * 119.91106 * 180.02562 * 8 7 6 10 10 C 1.38247 * 120.17855 * 0.02562 * 8 7 6 11 11 C 1.38545 * 120.01575 * 359.97438 * 10 8 7 12 12 O 1.35969 * 120.08399 * 179.97438 * 11 10 8 13 13 C 1.42903 * 116.99866 * 354.70669 * 12 11 10 14 14 C 1.53001 * 109.46797 * 184.54911 * 13 12 11 15 15 C 1.50701 * 115.55467 * 80.81183 * 14 13 12 16 16 H 1.07996 * 120.00124 * 219.68131 * 15 14 13 17 17 C 1.37874 * 119.99925 * 39.67500 * 15 14 13 18 18 N 1.31516 * 120.00256 * 20.75818 * 17 15 14 19 19 Si 1.86802 * 120.00179 * 200.75644 * 17 15 14 20 20 H 1.48501 * 109.46808 * 90.00068 * 19 17 15 21 21 H 1.48493 * 109.47294 * 209.99907 * 19 17 15 22 22 H 1.48500 * 109.46784 * 330.00540 * 19 17 15 23 23 C 1.52999 * 117.49900 * 295.13506 * 14 13 12 24 24 C 1.52999 * 60.03610 * 252.50363 * 23 14 13 25 25 H 1.08993 * 109.47434 * 269.99791 * 1 2 3 26 26 H 1.09005 * 109.47310 * 30.00051 * 1 2 3 27 27 H 1.09000 * 109.47172 * 149.99470 * 1 2 3 28 28 H 0.97000 * 120.00196 * 5.73511 * 4 2 1 29 29 H 1.08003 * 120.00628 * 0.02926 * 6 5 4 30 30 H 1.08001 * 119.91602 * 179.72797 * 7 6 5 31 31 H 1.09001 * 109.47408 * 269.98179 * 9 8 7 32 32 H 1.09002 * 109.47161 * 29.98422 * 9 8 7 33 33 H 1.09001 * 109.47479 * 149.98190 * 9 8 7 34 34 H 1.08002 * 119.98891 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47310 * 64.54631 * 13 12 11 36 36 H 1.09003 * 109.46621 * 304.54153 * 13 12 11 37 37 H 0.97001 * 120.00341 * 184.97697 * 18 17 15 38 38 H 1.09003 * 117.49894 * 0.02562 * 23 14 13 39 39 H 1.08997 * 117.50077 * 145.00352 * 23 14 13 40 40 H 1.09002 * 117.50237 * 107.49335 * 24 23 14 41 41 H 1.08996 * 117.50081 * 252.52462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5769 -1.1703 0.1209 6 6 4.2329 -0.0605 0.6330 7 6 5.6102 -0.0638 0.7465 8 6 6.3370 -1.1733 0.3554 9 6 7.8386 -1.1709 0.4821 10 6 5.6897 -2.2847 -0.1515 11 6 4.3092 -2.2895 -0.2685 12 8 3.6712 -3.3817 -0.7673 13 6 4.4912 -4.4435 -1.2596 14 6 3.6057 -5.5265 -1.8789 15 6 3.1339 -5.2555 -3.2843 16 1 2.1256 -5.5116 -3.5743 17 6 3.9895 -4.6804 -4.1998 18 7 5.2897 -4.7373 -4.0108 19 14 3.3019 -3.8201 -5.7087 20 1 3.0693 -2.3867 -5.3982 21 1 4.2713 -3.9332 -6.8278 22 1 2.0183 -4.4566 -6.0993 23 6 2.6538 -6.2791 -0.9470 24 6 3.8965 -6.9806 -1.4988 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6995 -2.0051 -0.0848 29 1 3.6678 0.8073 0.9393 30 1 6.1202 0.8025 1.1413 31 1 8.2802 -0.7841 -0.4363 32 1 8.1315 -0.5387 1.3204 33 1 8.1904 -2.1881 0.6540 34 1 6.2603 -3.1498 -0.4556 35 1 5.0657 -4.8700 -0.4373 36 1 5.1730 -4.0550 -2.0162 37 1 5.8886 -4.2716 -4.6153 38 1 2.6582 -6.0023 0.1073 39 1 1.6864 -6.5781 -1.3503 40 1 4.7188 -7.1654 -0.8075 41 1 3.7467 -7.7408 -2.2654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596266999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:09 Heat of formation + Delta-G solvation = -24.670439 kcal Electronic energy + Delta-G solvation = -23230.329142 eV Core-core repulsion = 19883.414869 eV Total energy + Delta-G solvation = -3346.914273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46948 -38.96588 -37.36239 -35.82713 -34.71517 -32.29051 -31.68954 -29.61158 -29.45865 -26.92680 -25.79693 -25.21462 -22.44935 -21.43410 -21.03614 -20.20889 -19.22053 -17.81276 -16.81494 -16.76410 -16.09452 -15.51751 -15.00361 -14.75404 -14.50077 -14.26404 -13.91125 -13.76484 -13.42607 -13.27936 -13.04234 -12.63871 -12.50502 -12.41543 -11.86919 -11.82381 -11.67918 -11.17182 -11.15424 -11.07769 -10.80486 -10.55511 -10.40424 -10.13038 -10.05249 -9.57290 -9.45566 -9.18040 -8.79555 -8.18003 -8.08129 -7.22291 -6.25728 -4.18825 1.56494 1.87018 2.74268 3.24604 3.28752 3.33127 3.35126 3.87739 4.20098 4.32557 4.79255 4.88319 5.15267 5.17858 5.25701 5.32219 5.39369 5.50601 5.57331 5.73534 5.80098 5.86350 5.88405 6.00497 6.08934 6.13170 6.21061 6.30151 6.46137 6.55408 6.59399 6.65950 6.72122 6.82373 6.90517 6.97245 7.21672 7.29339 7.32997 7.64569 7.76258 8.12378 8.26133 8.30941 8.75117 9.39597 10.81770 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006106 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.523597 B = 4584.881258 C = 5300.174171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.538 6.538 4 N -0.653 5.653 5 C 0.097 3.903 6 C -0.103 4.103 7 C -0.154 4.154 8 C -0.068 4.068 9 C -0.110 4.110 10 C -0.192 4.192 11 C 0.127 3.873 12 O -0.308 6.308 13 C 0.093 3.907 14 C 0.050 3.950 15 C -0.487 4.487 16 H 0.064 0.936 17 C 0.074 3.926 18 N -0.872 5.872 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.200 4.200 24 C -0.189 4.189 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.418 0.582 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.028 0.972 36 H 0.106 0.894 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 6.156 9.705 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.416 6.416 4 N -0.297 5.297 5 C 0.003 3.997 6 C -0.123 4.123 7 C -0.173 4.173 8 C -0.069 4.069 9 C -0.167 4.167 10 C -0.212 4.212 11 C 0.078 3.922 12 O -0.221 6.221 13 C 0.019 3.981 14 C 0.050 3.950 15 C -0.524 4.524 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.508 5.508 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.237 4.237 24 C -0.227 4.227 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.255 0.745 29 H 0.172 0.828 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.971 6.829 9.554 11.908 hybrid contribution -0.256 -0.188 -0.936 0.988 sum -2.226 6.641 8.618 11.105 Atomic orbital electron populations 1.21873 0.91090 1.05291 1.04786 1.20910 0.90803 0.83105 0.75569 1.90601 1.70138 1.31661 1.49234 1.43427 1.05427 1.10141 1.70676 1.17159 0.82598 0.94406 1.05550 1.21395 0.94576 0.97956 0.98376 1.20711 0.93404 0.98190 1.04981 1.19672 0.95795 0.93413 0.98010 1.20748 0.91610 1.02425 1.01904 1.21023 0.92852 1.00560 1.06740 1.18793 0.90891 0.87867 0.94684 1.86008 1.37040 1.25069 1.73981 1.22696 0.93571 0.85774 0.96009 1.18805 0.95579 0.87017 0.93646 1.20472 0.98056 1.41225 0.92620 0.91765 1.24898 0.94460 0.95801 0.97806 1.70013 1.01880 1.39847 1.39095 0.86729 0.79246 0.80700 0.82351 1.20321 1.21215 1.19635 1.22802 0.94540 1.08418 0.97931 1.22989 0.97725 0.99288 1.02707 0.88707 0.88728 0.89729 0.74534 0.82822 0.86306 0.91314 0.91854 0.91701 0.84930 0.95394 0.87650 0.92655 0.91148 0.90374 0.91598 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.31 36.00 0.37 -1.26 16 2 C 0.51 7.46 7.79 -10.99 -0.09 7.38 16 3 O -0.54 -9.61 14.00 5.55 0.08 -9.54 16 4 N -0.65 -10.34 5.33 -9.75 -0.05 -10.39 16 5 C 0.10 1.78 6.52 -83.49 -0.54 1.24 16 6 C -0.10 -1.78 8.79 -39.42 -0.35 -2.12 16 7 C -0.15 -2.42 9.69 -39.58 -0.38 -2.81 16 8 C -0.07 -1.09 5.88 -104.61 -0.62 -1.71 16 9 C -0.11 -1.38 10.01 36.00 0.36 -1.02 16 10 C -0.19 -3.54 8.68 -39.46 -0.34 -3.88 16 11 C 0.13 2.50 6.70 -39.07 -0.26 2.23 16 12 O -0.31 -6.62 9.46 -19.64 -0.19 -6.81 16 13 C 0.09 2.12 4.44 37.16 0.16 2.29 16 14 C 0.05 1.20 1.92 -155.62 -0.30 0.90 16 15 C -0.49 -12.91 8.96 -34.44 -0.31 -13.21 16 16 H 0.06 1.70 7.90 -52.49 -0.41 1.29 16 17 C 0.07 1.96 5.03 -17.82 -0.09 1.87 16 18 N -0.87 -23.61 11.34 55.43 0.63 -22.99 16 19 Si 0.88 20.83 29.59 -169.99 -5.03 15.80 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.20 -4.15 9.92 -26.73 -0.27 -4.41 16 24 C -0.19 -4.12 9.89 -26.69 -0.26 -4.38 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.42 6.02 8.24 -40.82 -0.34 5.68 16 29 H 0.15 2.65 5.41 -52.48 -0.28 2.37 16 30 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.13 2.44 6.33 -52.49 -0.33 2.11 16 35 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 36 H 0.11 2.65 5.14 -51.93 -0.27 2.38 16 37 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -29.95 343.67 -8.09 -38.04 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.80 Total: 9.61 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.91 Total: -18.91 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.58 Total: -33.37 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.11 Total: -16.35 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.95 -8.09 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.369 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds