Wall clock time and date at job start Tue Mar 31 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21290 * 120.00046 * 2 1 4 4 N 1.34780 * 119.99877 * 180.02562 * 2 1 3 5 5 C 1.40133 * 119.99753 * 185.74128 * 4 2 1 6 6 C 1.38718 * 120.09217 * 19.30252 * 5 4 2 7 7 C 1.38197 * 119.98356 * 180.27648 * 6 5 4 8 8 C 1.38273 * 120.16450 * 359.74573 * 7 6 5 9 9 C 1.50698 * 119.91106 * 180.02562 * 8 7 6 10 10 C 1.38247 * 120.17855 * 0.02562 * 8 7 6 11 11 C 1.38545 * 120.01575 * 359.97438 * 10 8 7 12 12 O 1.35969 * 120.08399 * 179.97438 * 11 10 8 13 13 C 1.42903 * 116.99866 * 354.70669 * 12 11 10 14 14 C 1.53001 * 109.46797 * 184.54911 * 13 12 11 15 15 C 1.50701 * 115.55467 * 80.81183 * 14 13 12 16 16 H 1.07996 * 120.00124 * 219.68131 * 15 14 13 17 17 C 1.37874 * 119.99925 * 39.67500 * 15 14 13 18 18 N 1.31516 * 120.00256 * 20.75818 * 17 15 14 19 19 Si 1.86802 * 120.00179 * 200.75644 * 17 15 14 20 20 H 1.48501 * 109.46808 * 90.00068 * 19 17 15 21 21 H 1.48493 * 109.47294 * 209.99907 * 19 17 15 22 22 H 1.48500 * 109.46784 * 330.00540 * 19 17 15 23 23 C 1.52999 * 117.49900 * 295.13506 * 14 13 12 24 24 C 1.52999 * 60.03610 * 252.50363 * 23 14 13 25 25 H 1.08993 * 109.47434 * 269.99791 * 1 2 3 26 26 H 1.09005 * 109.47310 * 30.00051 * 1 2 3 27 27 H 1.09000 * 109.47172 * 149.99470 * 1 2 3 28 28 H 0.97000 * 120.00196 * 5.73511 * 4 2 1 29 29 H 1.08003 * 120.00628 * 0.02926 * 6 5 4 30 30 H 1.08001 * 119.91602 * 179.72797 * 7 6 5 31 31 H 1.09001 * 109.47408 * 269.98179 * 9 8 7 32 32 H 1.09002 * 109.47161 * 29.98422 * 9 8 7 33 33 H 1.09001 * 109.47479 * 149.98190 * 9 8 7 34 34 H 1.08002 * 119.98891 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47310 * 64.54631 * 13 12 11 36 36 H 1.09003 * 109.46621 * 304.54153 * 13 12 11 37 37 H 0.97001 * 120.00341 * 184.97697 * 18 17 15 38 38 H 1.09003 * 117.49894 * 0.02562 * 23 14 13 39 39 H 1.08997 * 117.50077 * 145.00352 * 23 14 13 40 40 H 1.09002 * 117.50237 * 107.49335 * 24 23 14 41 41 H 1.08996 * 117.50081 * 252.52462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5769 -1.1703 0.1209 6 6 4.2329 -0.0605 0.6330 7 6 5.6102 -0.0638 0.7465 8 6 6.3370 -1.1733 0.3554 9 6 7.8386 -1.1709 0.4821 10 6 5.6897 -2.2847 -0.1515 11 6 4.3092 -2.2895 -0.2685 12 8 3.6712 -3.3817 -0.7673 13 6 4.4912 -4.4435 -1.2596 14 6 3.6057 -5.5265 -1.8789 15 6 3.1339 -5.2555 -3.2843 16 1 2.1256 -5.5116 -3.5743 17 6 3.9895 -4.6804 -4.1998 18 7 5.2897 -4.7373 -4.0108 19 14 3.3019 -3.8201 -5.7087 20 1 3.0693 -2.3867 -5.3982 21 1 4.2713 -3.9332 -6.8278 22 1 2.0183 -4.4566 -6.0993 23 6 2.6538 -6.2791 -0.9470 24 6 3.8965 -6.9806 -1.4988 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6995 -2.0051 -0.0848 29 1 3.6678 0.8073 0.9393 30 1 6.1202 0.8025 1.1413 31 1 8.2802 -0.7841 -0.4363 32 1 8.1315 -0.5387 1.3204 33 1 8.1904 -2.1881 0.6540 34 1 6.2603 -3.1498 -0.4556 35 1 5.0657 -4.8700 -0.4373 36 1 5.1730 -4.0550 -2.0162 37 1 5.8886 -4.2716 -4.6153 38 1 2.6582 -6.0023 0.1073 39 1 1.6864 -6.5781 -1.3503 40 1 4.7188 -7.1654 -0.8075 41 1 3.7467 -7.7408 -2.2654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596266999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:06 Heat of formation + Delta-G solvation = -41.208704 kcal Electronic energy + Delta-G solvation = -23231.046295 eV Core-core repulsion = 19883.414869 eV Total energy + Delta-G solvation = -3347.631426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.77734 -40.34957 -38.88981 -37.44962 -35.99329 -34.27457 -32.84305 -30.96053 -30.44572 -28.54420 -27.55506 -26.65298 -23.80892 -23.04062 -22.43907 -21.49955 -20.99143 -19.15352 -18.50159 -18.00846 -17.67284 -16.97206 -16.63736 -16.26918 -16.12102 -15.49046 -15.37473 -15.16643 -14.89128 -14.55067 -14.38020 -13.96416 -13.61840 -13.45980 -13.37351 -13.11622 -12.98212 -12.87511 -12.79270 -12.45519 -12.38298 -12.31231 -12.10231 -11.80056 -11.37489 -11.33869 -11.05217 -10.67974 -10.61236 -10.05279 -9.49375 -8.60018 -8.25447 -6.22516 0.25316 0.47970 1.34686 1.40553 1.46104 1.58699 2.11118 2.35467 2.37583 2.84474 2.94065 3.63650 3.74681 3.91510 3.98698 4.20643 4.21976 4.31650 4.40468 4.48005 4.55530 4.59214 4.64835 4.70559 4.77552 4.84183 4.85208 4.93467 5.02256 5.05181 5.11371 5.17076 5.22970 5.36638 5.45362 5.53334 5.53684 5.66810 5.76698 5.97708 6.31241 6.45858 6.61315 6.74006 7.10133 7.36426 8.80665 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006106 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.523597 B = 4584.881258 C = 5300.174171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.501 3.499 3 O -0.574 6.574 4 N -0.655 5.655 5 C 0.086 3.914 6 C -0.113 4.113 7 C -0.146 4.146 8 C -0.070 4.070 9 C -0.108 4.108 10 C -0.205 4.205 11 C 0.095 3.905 12 O -0.318 6.318 13 C 0.108 3.892 14 C 0.013 3.987 15 C -0.503 4.503 16 H 0.056 0.944 17 C 0.034 3.966 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.285 1.285 21 H -0.283 1.283 22 H -0.264 1.264 23 C -0.175 4.175 24 C -0.186 4.186 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.423 0.577 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 6.911 10.703 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.292 3.708 3 O -0.454 6.454 4 N -0.299 5.299 5 C -0.009 4.009 6 C -0.133 4.133 7 C -0.165 4.165 8 C -0.071 4.071 9 C -0.165 4.165 10 C -0.224 4.224 11 C 0.047 3.953 12 O -0.232 6.232 13 C 0.033 3.967 14 C 0.013 3.987 15 C -0.540 4.540 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.530 5.530 19 Si 0.759 3.241 20 H -0.211 1.211 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.212 4.212 24 C -0.223 4.223 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.260 0.740 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.464 7.567 10.554 13.218 hybrid contribution -0.097 -0.376 -1.189 1.250 sum -2.561 7.191 9.366 12.083 Atomic orbital electron populations 1.21922 0.86746 1.06459 1.06836 1.21892 0.92777 0.82048 0.74053 1.90573 1.71338 1.32690 1.50828 1.43582 1.04676 1.10971 1.70679 1.17401 0.83935 0.94178 1.05370 1.21567 0.95452 0.97611 0.98623 1.21109 0.92948 0.98935 1.03486 1.20052 0.97779 0.92505 0.96800 1.20814 0.88904 1.03454 1.03293 1.21154 0.92601 1.01348 1.07317 1.19050 0.91741 0.88042 0.96497 1.85949 1.37097 1.25499 1.74678 1.22333 0.93041 0.85845 0.95433 1.18923 0.97988 0.88364 0.93468 1.20724 0.97656 1.41463 0.94160 0.92615 1.25471 0.94747 0.96490 0.99995 1.70089 1.02510 1.40494 1.39927 0.85936 0.78998 0.79203 0.79954 1.21121 1.20908 1.18809 1.22807 0.94139 1.05973 0.98314 1.22970 0.98941 0.97656 1.02775 0.86054 0.87926 0.88110 0.73986 0.82790 0.83149 0.90677 0.89220 0.91307 0.85765 0.94490 0.90476 0.92806 0.89251 0.89856 0.90084 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.31 71.23 0.73 -1.96 16 2 C 0.50 14.30 7.79 87.66 0.68 14.98 16 3 O -0.57 -20.26 14.00 -3.06 -0.04 -20.30 16 4 N -0.66 -20.56 5.33 -303.13 -1.62 -22.18 16 5 C 0.09 3.16 6.52 38.18 0.25 3.41 16 6 C -0.11 -3.82 8.79 22.37 0.20 -3.62 16 7 C -0.15 -4.36 9.69 22.27 0.22 -4.14 16 8 C -0.07 -2.18 5.88 -19.85 -0.12 -2.30 16 9 C -0.11 -2.48 10.01 71.24 0.71 -1.77 16 10 C -0.20 -7.61 8.68 22.35 0.19 -7.42 16 11 C 0.09 3.79 6.70 22.60 0.15 3.94 16 12 O -0.32 -13.92 9.46 -93.20 -0.88 -14.80 16 13 C 0.11 4.98 4.44 71.98 0.32 5.30 16 14 C 0.01 0.63 1.92 -52.90 -0.10 0.52 16 15 C -0.50 -26.92 8.96 25.60 0.23 -26.69 16 16 H 0.06 2.98 7.90 -2.91 -0.02 2.96 16 17 C 0.03 1.83 5.03 84.65 0.43 2.25 16 18 N -0.89 -49.26 11.34 21.45 0.24 -49.02 16 19 Si 0.93 43.20 29.59 68.60 2.03 45.23 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 C -0.18 -7.05 9.92 30.59 0.30 -6.75 16 24 C -0.19 -7.94 9.89 30.62 0.30 -7.64 16 25 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.42 12.06 8.24 -92.71 -0.76 11.29 16 29 H 0.15 5.24 5.41 -2.91 -0.02 5.22 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.12 4.72 6.33 -2.91 -0.02 4.70 16 35 H 0.04 1.58 7.50 -2.39 -0.02 1.57 16 36 H 0.08 4.00 5.14 -2.39 -0.01 3.99 16 37 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.18 8.08 -2.39 -0.02 3.16 16 41 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -65.07 343.67 4.51 -60.56 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.28 Total: 32.39 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.50 Total: -31.87 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.37 Total: -71.20 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.92 Total: -35.10 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.07 4.51 -60.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596266999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.351 kcal (2) G-P(sol) polarization free energy of solvation -65.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds