Wall clock time and date at job start Tue Mar 31 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 117.00236 * 2 1 4 4 C 1.38853 * 119.98534 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.24365 * 179.72315 * 4 3 2 6 6 C 1.38007 * 120.20302 * 359.97247 * 5 4 3 7 7 C 1.39568 * 119.96617 * 0.02667 * 6 5 4 8 8 C 1.47860 * 120.11331 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99548 * 177.50665 * 8 7 6 10 10 N 1.34768 * 120.00501 * 357.50895 * 8 7 6 11 11 C 1.46499 * 120.00353 * 185.00923 * 10 8 7 12 12 C 1.52996 * 109.47625 * 175.00568 * 11 10 8 13 13 C 1.50705 * 115.54842 * 305.82278 * 12 11 10 14 14 H 1.07995 * 120.00289 * 144.09650 * 13 12 11 15 15 C 1.37874 * 119.99676 * 324.09383 * 13 12 11 16 16 N 1.31512 * 120.00289 * 3.14747 * 15 13 12 17 17 Si 1.86807 * 120.00001 * 183.14945 * 15 13 12 18 18 H 1.48497 * 109.46999 * 59.99724 * 17 15 13 19 19 H 1.48496 * 109.47333 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46949 * 300.00270 * 17 15 13 21 21 C 1.53003 * 117.50298 * 160.14890 * 12 11 10 22 22 C 1.53000 * 117.50155 * 91.48714 * 12 11 10 23 23 C 1.38450 * 119.98606 * 179.72109 * 3 2 1 24 24 C 1.50706 * 120.10550 * 0.26143 * 23 3 2 25 25 H 1.09000 * 109.46595 * 299.99316 * 1 2 3 26 26 H 1.08999 * 109.47449 * 59.99436 * 1 2 3 27 27 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.87980 * 359.69506 * 4 3 2 29 29 H 1.07995 * 119.90165 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.01502 * 180.02562 * 6 5 4 31 31 H 0.97002 * 120.00023 * 5.00624 * 10 8 7 32 32 H 1.09008 * 109.47118 * 295.00769 * 11 10 8 33 33 H 1.09004 * 109.47110 * 55.00346 * 11 10 8 34 34 H 0.97005 * 120.00323 * 185.00182 * 16 15 13 35 35 H 1.08999 * 117.49283 * 0.02562 * 21 12 11 36 36 H 1.09002 * 117.49611 * 145.01677 * 21 12 11 37 37 H 1.08998 * 117.50322 * 214.98024 * 22 12 11 38 38 H 1.09003 * 117.49802 * 359.97438 * 22 12 11 39 39 H 1.09005 * 109.46863 * 97.61519 * 24 23 3 40 40 H 1.08994 * 109.47011 * 217.61884 * 24 23 3 41 41 H 1.09004 * 109.46439 * 337.62055 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9116 3.6098 0.0063 6 6 3.2892 3.6930 0.0122 7 6 4.0580 2.5282 0.0117 8 6 5.5341 2.6136 0.0174 9 8 6.2013 1.5986 0.0627 10 7 6.1397 3.8167 -0.0277 11 6 7.5986 3.8990 -0.1329 12 6 8.0170 5.3621 -0.2907 13 6 7.3576 6.1083 -1.4219 14 1 7.1040 7.1516 -1.3054 15 6 7.0780 5.4590 -2.6056 16 7 7.3300 4.1738 -2.7261 17 14 6.3415 6.4046 -4.0384 18 1 7.2651 7.4968 -4.4376 19 1 6.1367 5.4846 -5.1858 20 1 5.0366 6.9844 -3.6303 21 6 9.4658 5.7228 0.0438 22 6 8.3344 6.1475 0.9834 23 6 3.4286 1.2830 0.0058 24 6 4.2514 0.0203 0.0062 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2111 2.3163 -0.0040 29 1 1.3178 4.5119 0.0063 30 1 3.7720 4.6591 0.0171 31 1 5.6096 4.6282 0.0094 32 1 8.0517 3.4867 0.7688 33 1 7.9330 3.3299 -1.0004 34 1 7.2017 3.7324 -3.5803 35 1 10.1209 4.9174 0.3759 36 1 9.9419 6.4999 -0.5542 37 1 8.0668 7.2040 1.0033 38 1 8.2448 5.6219 1.9341 39 1 4.5680 -0.2073 -1.0117 40 1 5.1291 0.1589 0.6374 41 1 3.6519 -0.8037 0.3932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597611015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:29 Heat of formation + Delta-G solvation = -19.420620 kcal Electronic energy + Delta-G solvation = -23183.146040 eV Core-core repulsion = 19836.459417 eV Total energy + Delta-G solvation = -3346.686623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31770 -38.82126 -37.06456 -36.41814 -33.36095 -32.29819 -32.13812 -30.21322 -27.58398 -26.81259 -25.86336 -25.21086 -22.76225 -21.36043 -21.23696 -19.71194 -19.23180 -17.93251 -16.55134 -16.35392 -15.80746 -15.52635 -15.47350 -14.85961 -14.75138 -14.25536 -13.84396 -13.61808 -13.27767 -13.03945 -12.81019 -12.48985 -12.19815 -11.95232 -11.84105 -11.65691 -11.48818 -11.36420 -11.08979 -11.02915 -10.76759 -10.73678 -10.52950 -10.25644 -9.68988 -9.04832 -8.84376 -8.76225 -8.66654 -8.28011 -8.00374 -7.79932 -6.01503 -4.20532 1.13076 1.56302 3.21710 3.22749 3.30645 3.30778 3.43157 4.13160 4.28210 4.34476 4.80758 4.89174 4.99257 5.02129 5.04069 5.27412 5.32846 5.38408 5.46883 5.49674 5.79601 5.93523 6.02287 6.10719 6.27609 6.30283 6.39243 6.51392 6.54957 6.60453 6.61105 6.70890 6.71302 6.88109 6.97662 7.13041 7.25590 7.42490 7.56702 7.67285 7.96129 8.29784 8.58204 8.81657 9.19074 9.43313 10.89145 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004908 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.889523 B = 5704.169744 C = 6339.214179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.108 3.892 4 C -0.191 4.191 5 C -0.099 4.099 6 C -0.116 4.116 7 C -0.088 4.088 8 C 0.549 3.451 9 O -0.550 6.550 10 N -0.673 5.673 11 C 0.165 3.835 12 C 0.036 3.964 13 C -0.499 4.499 14 H 0.060 0.940 15 C 0.076 3.924 16 N -0.866 5.866 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.198 4.198 22 C -0.213 4.213 23 C -0.057 4.057 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.396 0.604 32 H 0.020 0.980 33 H 0.118 0.882 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 -3.917 5.273 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.063 3.937 4 C -0.210 4.210 5 C -0.117 4.117 6 C -0.135 4.135 7 C -0.091 4.091 8 C 0.335 3.665 9 O -0.431 6.431 10 N -0.320 5.320 11 C 0.042 3.958 12 C 0.035 3.965 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.128 4.128 16 N -0.502 5.502 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.236 4.236 22 C -0.250 4.250 23 C -0.059 4.059 24 C -0.170 4.170 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.231 0.769 32 H 0.038 0.962 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.027 -4.980 5.154 14.001 hybrid contribution -0.944 1.309 -0.921 1.858 sum -12.971 -3.670 4.234 14.129 Atomic orbital electron populations 1.23014 0.78924 1.03642 1.01138 1.86073 1.20799 1.26744 1.89087 1.18669 0.91610 0.84190 0.99196 1.21277 0.99718 0.92396 1.07562 1.20800 0.94394 0.96926 0.99559 1.21338 0.93853 0.98106 1.00248 1.19900 0.94371 0.92596 1.02214 1.17932 0.86327 0.84284 0.77934 1.90614 1.66011 1.34627 1.51898 1.45568 1.09313 1.06760 1.70317 1.21132 0.77778 0.96692 1.00208 1.19234 0.93170 0.91788 0.92281 1.20459 1.39787 0.96123 0.97218 0.92167 1.24975 0.94736 0.94551 0.98558 1.69842 1.47383 1.08362 1.24623 0.86665 0.79686 0.79734 0.82011 1.20220 1.21208 1.20130 1.22934 0.93522 1.02786 1.04396 1.22964 1.07131 1.00117 0.94802 1.19354 0.90271 0.95899 1.00337 1.20951 0.99987 0.92347 1.03681 0.92860 0.92835 0.88460 0.85596 0.85508 0.85027 0.76858 0.96151 0.86499 0.92570 0.91444 0.90221 0.90636 0.91322 0.91279 0.87931 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.25 9.41 -19.44 -0.18 -4.43 16 3 C 0.11 1.64 6.65 -39.28 -0.26 1.38 16 4 C -0.19 -2.48 9.03 -39.35 -0.36 -2.84 16 5 C -0.10 -1.32 10.03 -39.66 -0.40 -1.72 16 6 C -0.12 -1.86 9.54 -39.17 -0.37 -2.24 16 7 C -0.09 -1.63 5.87 -104.98 -0.62 -2.24 16 8 C 0.55 11.85 7.74 -12.33 -0.10 11.76 16 9 O -0.55 -13.08 13.24 5.32 0.07 -13.01 16 10 N -0.67 -14.58 5.05 -61.25 -0.31 -14.89 16 11 C 0.16 3.88 4.61 -4.04 -0.02 3.86 16 12 C 0.04 0.84 2.02 -155.66 -0.32 0.52 16 13 C -0.50 -12.49 8.43 -34.44 -0.29 -12.78 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.08 1.94 5.31 -17.82 -0.09 1.85 16 16 N -0.87 -23.01 10.21 55.43 0.57 -22.45 16 17 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.20 -4.28 9.96 -26.69 -0.27 -4.54 16 22 C -0.21 -4.37 9.92 -26.69 -0.26 -4.63 16 23 C -0.06 -1.00 5.93 -104.06 -0.62 -1.62 16 24 C -0.11 -1.98 8.69 36.01 0.31 -1.67 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.13 1.24 6.28 -52.49 -0.33 0.92 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 2.00 6.41 -52.48 -0.34 1.66 16 31 H 0.40 8.09 6.15 -40.82 -0.25 7.84 16 32 H 0.02 0.47 8.09 -51.92 -0.42 0.05 16 33 H 0.12 3.14 5.93 -51.93 -0.31 2.83 16 34 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.96 5.67 -51.93 -0.29 1.66 16 41 H 0.05 0.85 7.31 -51.93 -0.38 0.47 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -28.66 336.52 -8.09 -36.74 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.62 Total: 11.59 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.66 Total: -13.69 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.26 Total: -37.34 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.11 Total: -17.44 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.66 -8.09 -36.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.324 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds