Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 117.00236 * 2 1 4 4 C 1.38853 * 119.98534 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.24365 * 179.72315 * 4 3 2 6 6 C 1.38007 * 120.20302 * 359.97247 * 5 4 3 7 7 C 1.39568 * 119.96617 * 0.02667 * 6 5 4 8 8 C 1.47860 * 120.11331 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99548 * 177.50665 * 8 7 6 10 10 N 1.34768 * 120.00501 * 357.50895 * 8 7 6 11 11 C 1.46499 * 120.00353 * 185.00923 * 10 8 7 12 12 C 1.52996 * 109.47625 * 175.00568 * 11 10 8 13 13 C 1.50705 * 115.54842 * 305.82278 * 12 11 10 14 14 H 1.07995 * 120.00289 * 144.09650 * 13 12 11 15 15 C 1.37874 * 119.99676 * 324.09383 * 13 12 11 16 16 N 1.31512 * 120.00289 * 3.14747 * 15 13 12 17 17 Si 1.86807 * 120.00001 * 183.14945 * 15 13 12 18 18 H 1.48497 * 109.46999 * 59.99724 * 17 15 13 19 19 H 1.48496 * 109.47333 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46949 * 300.00270 * 17 15 13 21 21 C 1.53003 * 117.50298 * 160.14890 * 12 11 10 22 22 C 1.53000 * 117.50155 * 91.48714 * 12 11 10 23 23 C 1.38450 * 119.98606 * 179.72109 * 3 2 1 24 24 C 1.50706 * 120.10550 * 0.26143 * 23 3 2 25 25 H 1.09000 * 109.46595 * 299.99316 * 1 2 3 26 26 H 1.08999 * 109.47449 * 59.99436 * 1 2 3 27 27 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.87980 * 359.69506 * 4 3 2 29 29 H 1.07995 * 119.90165 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.01502 * 180.02562 * 6 5 4 31 31 H 0.97002 * 120.00023 * 5.00624 * 10 8 7 32 32 H 1.09008 * 109.47118 * 295.00769 * 11 10 8 33 33 H 1.09004 * 109.47110 * 55.00346 * 11 10 8 34 34 H 0.97005 * 120.00323 * 185.00182 * 16 15 13 35 35 H 1.08999 * 117.49283 * 0.02562 * 21 12 11 36 36 H 1.09002 * 117.49611 * 145.01677 * 21 12 11 37 37 H 1.08998 * 117.50322 * 214.98024 * 22 12 11 38 38 H 1.09003 * 117.49802 * 359.97438 * 22 12 11 39 39 H 1.09005 * 109.46863 * 97.61519 * 24 23 3 40 40 H 1.08994 * 109.47011 * 217.61884 * 24 23 3 41 41 H 1.09004 * 109.46439 * 337.62055 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 0.0005 5 6 1.9116 3.6098 0.0063 6 6 3.2892 3.6930 0.0122 7 6 4.0580 2.5282 0.0117 8 6 5.5341 2.6136 0.0174 9 8 6.2013 1.5986 0.0627 10 7 6.1397 3.8167 -0.0277 11 6 7.5986 3.8990 -0.1329 12 6 8.0170 5.3621 -0.2907 13 6 7.3576 6.1083 -1.4219 14 1 7.1040 7.1516 -1.3054 15 6 7.0780 5.4590 -2.6056 16 7 7.3300 4.1738 -2.7261 17 14 6.3415 6.4046 -4.0384 18 1 7.2651 7.4968 -4.4376 19 1 6.1367 5.4846 -5.1858 20 1 5.0366 6.9844 -3.6303 21 6 9.4658 5.7228 0.0438 22 6 8.3344 6.1475 0.9834 23 6 3.4286 1.2830 0.0058 24 6 4.2514 0.0203 0.0062 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2111 2.3163 -0.0040 29 1 1.3178 4.5119 0.0063 30 1 3.7720 4.6591 0.0171 31 1 5.6096 4.6282 0.0094 32 1 8.0517 3.4867 0.7688 33 1 7.9330 3.3299 -1.0004 34 1 7.2017 3.7324 -3.5803 35 1 10.1209 4.9174 0.3759 36 1 9.9419 6.4999 -0.5542 37 1 8.0668 7.2040 1.0033 38 1 8.2448 5.6219 1.9341 39 1 4.5680 -0.2073 -1.0117 40 1 5.1291 0.1589 0.6374 41 1 3.6519 -0.8037 0.3932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597611015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = -35.564581 kcal Electronic energy + Delta-G solvation = -23183.846095 eV Core-core repulsion = 19836.459417 eV Total energy + Delta-G solvation = -3347.386678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54163 -40.26556 -38.59625 -37.85208 -35.01055 -34.13597 -33.53018 -31.45671 -28.50910 -28.09682 -27.61693 -26.95126 -24.07019 -22.95603 -22.54505 -21.23774 -21.01213 -19.27563 -18.21887 -17.54693 -16.95051 -16.79021 -16.69284 -16.62548 -16.32572 -15.90433 -15.48137 -14.84722 -14.71405 -14.41749 -14.22956 -14.01758 -13.55214 -13.32105 -13.18495 -13.13112 -12.99377 -12.89075 -12.58604 -12.56894 -12.30807 -12.03324 -11.97303 -11.84829 -11.49498 -10.89375 -10.67224 -10.43944 -10.12009 -9.96920 -9.53363 -9.14159 -7.94356 -6.18883 -0.12635 0.40087 1.43497 1.46448 1.52800 2.00627 2.22677 2.42483 2.65925 2.89550 3.10497 3.64350 3.78852 3.84693 4.05512 4.10836 4.23800 4.30106 4.44644 4.46552 4.53674 4.56764 4.71877 4.75882 4.77324 4.81924 4.83159 4.88563 4.97419 5.14456 5.23145 5.28573 5.31545 5.40160 5.50193 5.54514 5.61148 5.74364 5.91944 5.99244 6.38158 6.42886 6.79239 6.97340 7.46640 7.52321 8.93110 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004908 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.889523 B = 5704.169744 C = 6339.214179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.176 4.176 5 C -0.087 4.087 6 C -0.126 4.126 7 C -0.113 4.113 8 C 0.542 3.458 9 O -0.584 6.584 10 N -0.671 5.671 11 C 0.176 3.824 12 C 0.007 3.993 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.037 3.963 16 N -0.891 5.891 17 Si 0.945 3.055 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.264 1.264 21 C -0.199 4.199 22 C -0.186 4.186 23 C -0.086 4.086 24 C -0.103 4.103 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.134 0.866 31 H 0.402 0.598 32 H 0.017 0.983 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.641 -2.558 5.793 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.064 3.936 4 C -0.194 4.194 5 C -0.105 4.105 6 C -0.145 4.145 7 C -0.117 4.117 8 C 0.330 3.670 9 O -0.468 6.468 10 N -0.318 5.318 11 C 0.053 3.947 12 C 0.007 3.993 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.164 4.164 16 N -0.528 5.528 17 Si 0.771 3.229 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.189 1.189 21 C -0.238 4.238 22 C -0.223 4.223 23 C -0.088 4.088 24 C -0.160 4.160 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.185 0.815 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.238 0.762 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.138 -3.595 5.689 16.567 hybrid contribution -0.070 0.841 -1.041 1.340 sum -15.208 -2.755 4.647 16.139 Atomic orbital electron populations 1.23404 0.76154 1.05708 1.02545 1.86058 1.23621 1.26109 1.88751 1.18707 0.90805 0.85717 0.98381 1.21734 1.01635 0.91200 1.04880 1.21235 0.93300 0.98708 0.97267 1.21471 0.95223 0.97148 1.00673 1.19713 0.92386 0.94287 1.05269 1.18541 0.87991 0.83618 0.76830 1.90590 1.67295 1.35575 1.53319 1.45476 1.08593 1.07199 1.70482 1.20793 0.79014 0.96631 0.98308 1.19269 0.94490 0.91727 0.93837 1.20670 1.39497 0.96122 0.97775 0.92135 1.25566 0.95240 0.95033 1.00578 1.70047 1.48826 1.09578 1.24361 0.85816 0.79472 0.78367 0.79224 1.20050 1.22170 1.18882 1.22955 0.93088 1.02969 1.04738 1.22959 1.04809 1.00352 0.94192 1.19430 0.91913 0.95189 1.02280 1.20753 0.99482 0.93583 1.02144 0.91129 0.91518 0.86372 0.81515 0.81642 0.84782 0.76210 0.96471 0.90163 0.93494 0.90696 0.90372 0.89553 0.89804 0.92983 0.90339 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.23 9.41 -92.49 -0.87 -9.10 16 3 C 0.11 3.10 6.65 22.47 0.15 3.25 16 4 C -0.18 -3.88 9.03 22.42 0.20 -3.68 16 5 C -0.09 -2.02 10.03 22.22 0.22 -1.80 16 6 C -0.13 -3.88 9.54 22.54 0.21 -3.66 16 7 C -0.11 -4.29 5.87 -20.10 -0.12 -4.41 16 8 C 0.54 24.52 7.74 86.79 0.67 25.20 16 9 O -0.58 -29.67 13.24 -3.88 -0.05 -29.72 16 10 N -0.67 -29.99 5.05 -465.96 -2.35 -32.35 16 11 C 0.18 8.59 4.61 86.38 0.40 8.99 16 12 C 0.01 0.35 2.02 -52.93 -0.11 0.24 16 13 C -0.50 -25.13 8.43 25.60 0.22 -24.91 16 14 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 15 C 0.04 1.91 5.31 84.65 0.45 2.36 16 16 N -0.89 -48.85 10.21 21.45 0.22 -48.63 16 17 Si 0.94 41.13 29.54 68.60 2.03 43.16 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 C -0.20 -8.49 9.96 30.62 0.30 -8.19 16 22 C -0.19 -7.35 9.92 30.62 0.30 -7.04 16 23 C -0.09 -3.08 5.93 -19.50 -0.12 -3.19 16 24 C -0.10 -3.79 8.69 71.24 0.62 -3.17 16 25 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 27 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.17 2.30 6.28 -2.91 -0.02 2.28 16 29 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.13 3.94 6.41 -2.91 -0.02 3.92 16 31 H 0.40 16.66 6.15 -92.71 -0.57 16.09 16 32 H 0.02 0.82 8.09 -2.38 -0.02 0.81 16 33 H 0.08 4.55 5.93 -2.39 -0.01 4.54 16 34 H 0.26 13.94 8.32 -92.70 -0.77 13.17 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.08 3.23 5.67 -2.39 -0.01 3.22 16 41 H 0.07 2.27 7.31 -2.39 -0.02 2.25 16 Total: -1.00 -64.29 336.52 3.97 -60.32 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.48 Total: 35.02 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.52 Total: -18.70 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.14 Total: -80.98 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.92 Total: -38.82 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -64.29 3.97 -60.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.751 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds