Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46501 * 109.47282 * 125.00317 * 3 2 1 5 5 C 1.46503 * 119.99550 * 264.49864 * 4 3 2 6 6 C 1.50705 * 109.46920 * 269.99398 * 5 4 3 7 7 H 1.07998 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99678 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00082 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99677 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47288 * 90.00081 * 10 8 6 12 12 H 1.48499 * 109.46947 * 209.99946 * 10 8 6 13 13 H 1.48495 * 109.47080 * 329.99819 * 10 8 6 14 14 C 1.34771 * 120.00137 * 84.49893 * 4 3 2 15 15 O 1.21559 * 119.99928 * 185.84699 * 14 4 3 16 16 C 1.47850 * 120.00244 * 5.83673 * 14 4 3 17 17 C 1.39608 * 120.11451 * 55.11610 * 16 14 4 18 18 C 1.37967 * 119.96595 * 179.97438 * 17 16 14 19 19 C 1.38292 * 120.20554 * 359.97425 * 18 17 16 20 20 C 1.38805 * 120.23862 * 0.04778 * 19 18 17 21 21 O 1.35911 * 119.98367 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00050 * 359.97438 * 21 20 19 23 23 C 1.38496 * 120.03338 * 359.95153 * 20 19 18 24 24 C 1.50696 * 120.10272 * 180.29804 * 23 20 19 25 25 H 1.08004 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00274 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00250 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47345 * 4.99583 * 3 2 1 29 29 H 1.09006 * 109.46961 * 244.99629 * 3 2 1 30 30 H 1.08994 * 109.47532 * 29.99542 * 5 4 3 31 31 H 1.08999 * 109.46793 * 150.00112 * 5 4 3 32 32 H 0.97003 * 119.99701 * 179.97438 * 9 8 6 33 33 H 1.07994 * 120.01815 * 359.97438 * 17 16 14 34 34 H 1.07997 * 119.89503 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.87709 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.46910 * 60.00083 * 22 21 20 37 37 H 1.08997 * 109.47337 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47317 * 300.00127 * 22 21 20 39 39 H 1.08995 * 109.47309 * 264.14329 * 24 23 20 40 40 H 1.08997 * 109.47171 * 24.15151 * 24 23 20 41 41 H 1.09001 * 109.46784 * 144.14681 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6001 1.9735 2.3882 6 6 2.9944 3.4277 2.3549 7 1 3.4884 3.8334 1.4844 8 6 2.7245 4.2400 3.4357 9 7 2.1235 3.7458 4.4959 10 14 3.2126 6.0427 3.3941 11 1 2.0978 6.8445 2.8288 12 1 3.5071 6.5077 4.7733 13 1 4.4210 6.2089 2.5472 14 6 4.2116 0.7664 1.0159 15 8 4.9425 0.6941 1.9846 16 6 4.6588 0.2338 -0.2888 17 6 4.6588 1.0550 -1.4178 18 6 5.0771 0.5550 -2.6337 19 6 5.4975 -0.7584 -2.7384 20 6 5.5006 -1.5825 -1.6215 21 8 5.9143 -2.8725 -1.7304 22 6 6.3317 -3.3130 -3.0242 23 6 5.0827 -1.0908 -0.3961 24 6 5.0916 -1.9822 0.8189 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.5206 1.8926 2.5150 31 1 3.1018 1.4801 3.2207 32 1 1.9339 4.3173 5.2565 33 1 4.3315 2.0812 -1.3394 34 1 5.0763 1.1911 -3.5064 35 1 5.8243 -1.1442 -3.6927 36 1 7.1725 -2.7063 -3.3607 37 1 6.6364 -4.3581 -2.9714 38 1 5.5051 -3.2102 -3.7272 39 1 4.1002 -2.4119 0.9617 40 1 5.8176 -2.7827 0.6769 41 1 5.3637 -1.3967 1.6971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -22.034050 kcal Electronic energy + Delta-G solvation = -23231.722927 eV Core-core repulsion = 19884.922977 eV Total energy + Delta-G solvation = -3346.799950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48414 -39.05608 -36.93842 -35.69041 -33.23505 -32.64263 -32.07808 -30.43542 -27.75194 -27.51261 -26.67786 -25.45074 -23.66386 -22.08407 -21.40799 -19.94546 -18.97122 -17.58077 -16.62634 -16.31195 -15.98813 -15.83316 -15.71750 -15.44324 -14.49661 -14.34151 -14.32084 -13.64832 -13.36422 -13.29882 -12.82678 -12.77452 -12.30436 -12.25708 -12.06277 -11.87703 -11.59083 -11.41904 -11.31698 -11.04996 -11.02294 -10.89619 -10.86064 -10.59045 -10.19340 -9.63497 -9.15069 -9.01570 -8.66659 -8.42844 -8.10763 -7.67512 -6.04223 -4.09480 1.14201 1.44676 2.49351 3.10408 3.30158 3.33400 3.37497 3.42538 3.83676 4.05156 4.44787 4.72334 4.80120 4.95537 4.96077 5.05135 5.19910 5.25748 5.27412 5.30292 5.37969 5.47049 5.57265 5.74124 5.80546 5.89974 5.99427 6.05769 6.21992 6.29227 6.40113 6.47395 6.58027 6.73823 6.84671 6.95667 7.10517 7.33086 7.45614 7.54011 7.92099 8.22385 8.36891 8.87129 9.03792 9.55623 11.03776 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004490 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.108814 B = 6234.131285 C = 6527.167629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.127 3.873 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.554 3.446 15 O -0.530 6.530 16 C -0.075 4.075 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.196 4.196 20 C 0.117 3.883 21 O -0.314 6.314 22 C 0.028 3.972 23 C -0.072 4.072 24 C -0.121 4.121 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -11.393 -17.058 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.003 3.997 4 N -0.314 5.314 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.340 3.660 15 O -0.407 6.407 16 C -0.078 4.078 17 C -0.142 4.142 18 C -0.110 4.110 19 C -0.215 4.215 20 C 0.072 3.928 21 O -0.227 6.227 22 C -0.067 4.067 23 C -0.073 4.073 24 C -0.177 4.177 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.902 -11.503 -16.166 20.052 hybrid contribution 0.204 1.097 -0.408 1.188 sum 3.106 -10.406 -16.574 19.815 Atomic orbital electron populations 1.23785 0.95764 1.01667 1.01179 1.23413 0.96323 0.99065 0.99347 1.20808 0.93065 0.95354 0.90430 1.48163 1.12879 1.54546 1.15773 1.19343 0.95950 0.92103 0.79888 1.21436 1.39130 0.94111 1.02098 0.92391 1.24926 0.95046 0.98893 0.95126 1.69938 1.41605 1.36062 1.05571 0.86502 0.78856 0.84697 0.77408 1.20632 1.21074 1.19865 1.18067 0.82405 0.78422 0.87132 1.90739 1.53913 1.57412 1.38663 1.19928 0.99902 0.93290 0.94692 1.21191 1.01173 1.00214 0.91586 1.20798 0.98058 0.94660 0.97479 1.21242 1.07101 0.95417 0.97756 1.18629 0.96787 0.83739 0.93606 1.86073 1.79575 1.24835 1.32228 1.23026 0.99288 1.00687 0.83719 1.19179 1.00760 0.93735 0.93637 1.20825 1.02153 0.98785 0.95963 0.88316 0.88846 0.87930 0.89298 0.89981 0.94782 0.93583 0.92689 0.84957 0.85468 0.85537 0.92791 0.88414 0.92773 0.91594 0.91253 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 14.32 29.02 0.42 -2.11 16 2 C -0.16 -2.49 9.80 -36.02 -0.35 -2.84 16 3 C 0.13 2.17 5.62 -5.19 -0.03 2.14 16 4 N -0.58 -12.64 2.45 -177.54 -0.44 -13.08 16 5 C 0.25 6.47 5.18 -5.19 -0.03 6.44 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.55 12.09 6.49 -12.33 -0.08 12.01 16 15 O -0.53 -13.64 14.73 5.31 0.08 -13.56 16 16 C -0.07 -1.32 4.95 -104.99 -0.52 -1.84 16 17 C -0.12 -1.83 7.61 -39.17 -0.30 -2.13 16 18 C -0.09 -1.10 10.03 -39.66 -0.40 -1.50 16 19 C -0.20 -2.30 9.03 -39.35 -0.36 -2.66 16 20 C 0.12 1.63 6.65 -39.28 -0.26 1.36 16 21 O -0.31 -3.88 9.44 -19.46 -0.18 -4.06 16 22 C 0.03 0.21 9.81 101.05 0.99 1.21 16 23 C -0.07 -1.17 5.93 -104.06 -0.62 -1.79 16 24 C -0.12 -1.94 9.36 36.00 0.34 -1.60 16 25 H 0.10 1.30 7.84 -52.48 -0.41 0.88 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.09 1.54 7.68 -51.93 -0.40 1.14 16 29 H 0.08 1.24 4.56 -51.93 -0.24 1.00 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.13 1.93 7.38 -52.49 -0.39 1.54 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.10 6.28 -52.48 -0.33 0.77 16 36 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.00 7.36 -51.93 -0.38 0.61 16 41 H 0.09 1.70 5.95 -51.93 -0.31 1.39 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -33.08 344.75 -6.96 -40.04 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.71 Total: 1.36 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.62 Total: -6.88 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.30 Total: -38.85 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.11 Total: -17.62 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.08 -6.96 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.005 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds