Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46501 * 109.47282 * 125.00317 * 3 2 1 5 5 C 1.46503 * 119.99550 * 264.49864 * 4 3 2 6 6 C 1.50705 * 109.46920 * 269.99398 * 5 4 3 7 7 H 1.07998 * 119.99934 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99678 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00082 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99677 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47288 * 90.00081 * 10 8 6 12 12 H 1.48499 * 109.46947 * 209.99946 * 10 8 6 13 13 H 1.48495 * 109.47080 * 329.99819 * 10 8 6 14 14 C 1.34771 * 120.00137 * 84.49893 * 4 3 2 15 15 O 1.21559 * 119.99928 * 185.84699 * 14 4 3 16 16 C 1.47850 * 120.00244 * 5.83673 * 14 4 3 17 17 C 1.39608 * 120.11451 * 55.11610 * 16 14 4 18 18 C 1.37967 * 119.96595 * 179.97438 * 17 16 14 19 19 C 1.38292 * 120.20554 * 359.97425 * 18 17 16 20 20 C 1.38805 * 120.23862 * 0.04778 * 19 18 17 21 21 O 1.35911 * 119.98367 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00050 * 359.97438 * 21 20 19 23 23 C 1.38496 * 120.03338 * 359.95153 * 20 19 18 24 24 C 1.50696 * 120.10272 * 180.29804 * 23 20 19 25 25 H 1.08004 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00274 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00250 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47345 * 4.99583 * 3 2 1 29 29 H 1.09006 * 109.46961 * 244.99629 * 3 2 1 30 30 H 1.08994 * 109.47532 * 29.99542 * 5 4 3 31 31 H 1.08999 * 109.46793 * 150.00112 * 5 4 3 32 32 H 0.97003 * 119.99701 * 179.97438 * 9 8 6 33 33 H 1.07994 * 120.01815 * 359.97438 * 17 16 14 34 34 H 1.07997 * 119.89503 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.87709 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.46910 * 60.00083 * 22 21 20 37 37 H 1.08997 * 109.47337 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47317 * 300.00127 * 22 21 20 39 39 H 1.08995 * 109.47309 * 264.14329 * 24 23 20 40 40 H 1.08997 * 109.47171 * 24.15151 * 24 23 20 41 41 H 1.09001 * 109.46784 * 144.14681 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6001 1.9735 2.3882 6 6 2.9944 3.4277 2.3549 7 1 3.4884 3.8334 1.4844 8 6 2.7245 4.2400 3.4357 9 7 2.1235 3.7458 4.4959 10 14 3.2126 6.0427 3.3941 11 1 2.0978 6.8445 2.8288 12 1 3.5071 6.5077 4.7733 13 1 4.4210 6.2089 2.5472 14 6 4.2116 0.7664 1.0159 15 8 4.9425 0.6941 1.9846 16 6 4.6588 0.2338 -0.2888 17 6 4.6588 1.0550 -1.4178 18 6 5.0771 0.5550 -2.6337 19 6 5.4975 -0.7584 -2.7384 20 6 5.5006 -1.5825 -1.6215 21 8 5.9143 -2.8725 -1.7304 22 6 6.3317 -3.3130 -3.0242 23 6 5.0827 -1.0908 -0.3961 24 6 5.0916 -1.9822 0.8189 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.5206 1.8926 2.5150 31 1 3.1018 1.4801 3.2207 32 1 1.9339 4.3173 5.2565 33 1 4.3315 2.0812 -1.3394 34 1 5.0763 1.1911 -3.5064 35 1 5.8243 -1.1442 -3.6927 36 1 7.1725 -2.7063 -3.3607 37 1 6.6364 -4.3581 -2.9714 38 1 5.5051 -3.2102 -3.7272 39 1 4.1002 -2.4119 0.9617 40 1 5.8176 -2.7827 0.6769 41 1 5.3637 -1.3967 1.6971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597684967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -42.244758 kcal Electronic energy + Delta-G solvation = -23232.599329 eV Core-core repulsion = 19884.922977 eV Total energy + Delta-G solvation = -3347.676352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69360 -40.41217 -38.07008 -37.31674 -35.13585 -33.87194 -33.66365 -31.69156 -29.43993 -28.43888 -27.85487 -26.92389 -25.44476 -23.45665 -22.61256 -21.24201 -20.26915 -18.89363 -18.60626 -17.65020 -17.26928 -17.20405 -16.76066 -16.65133 -16.26322 -15.81653 -15.64550 -14.84289 -14.65307 -14.49044 -14.25034 -14.16985 -14.03018 -13.39084 -13.35327 -13.23835 -13.02179 -12.93607 -12.76343 -12.58952 -12.52984 -12.25947 -12.22346 -11.94702 -11.87744 -11.68838 -10.71506 -10.65000 -10.35328 -9.84107 -9.51471 -9.11807 -8.22852 -6.38352 -0.00974 0.38198 1.27849 1.37090 1.40409 1.50722 1.76097 2.17908 2.38628 2.56238 2.71323 3.06943 3.57884 3.76608 3.98316 4.03916 4.05614 4.21839 4.24063 4.43312 4.47093 4.47388 4.52107 4.65350 4.67645 4.75567 4.79366 4.80673 4.98306 5.01662 5.18166 5.19940 5.28505 5.37631 5.43976 5.49854 5.67730 5.69373 5.74880 5.91596 6.03855 6.43320 6.63259 6.71380 7.22428 7.37971 8.84695 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004490 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.108814 B = 6234.131285 C = 6527.167629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.184 4.184 3 C 0.127 3.873 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.970 3.030 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.549 3.451 15 O -0.586 6.586 16 C -0.095 4.095 17 C -0.134 4.134 18 C -0.075 4.075 19 C -0.181 4.181 20 C 0.120 3.880 21 O -0.331 6.331 22 C 0.016 3.984 23 C -0.096 4.096 24 C -0.114 4.114 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.023 0.977 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.131 0.869 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -11.327 -21.021 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.005 3.995 4 N -0.316 5.316 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.794 3.206 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.338 3.662 15 O -0.468 6.468 16 C -0.099 4.099 17 C -0.152 4.152 18 C -0.093 4.093 19 C -0.199 4.199 20 C 0.075 3.925 21 O -0.245 6.245 22 C -0.078 4.078 23 C -0.098 4.098 24 C -0.170 4.170 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.028 -11.457 -20.185 23.406 hybrid contribution 0.155 0.937 0.742 1.206 sum 3.183 -10.519 -19.443 22.334 Atomic orbital electron populations 1.24040 0.95117 1.03072 0.98030 1.23245 0.96902 0.97966 1.02182 1.21012 0.92567 0.96379 0.89556 1.48127 1.13967 1.54063 1.15458 1.18783 0.94435 0.91549 0.81015 1.21696 1.39345 0.94986 1.02372 0.92519 1.25874 0.94731 1.03869 0.94528 1.70065 1.42431 1.37946 1.06269 0.85382 0.78933 0.78770 0.77530 1.18614 1.20693 1.19639 1.18815 0.81626 0.77388 0.88412 1.90689 1.55402 1.59519 1.41145 1.19548 1.02682 0.94565 0.93063 1.21272 1.02121 0.99904 0.91951 1.21211 0.95620 0.95215 0.97229 1.21702 1.04877 0.94778 0.98542 1.18640 0.95978 0.84813 0.93093 1.86060 1.79334 1.23890 1.35183 1.23409 1.00376 1.02006 0.82012 1.19187 1.02391 0.93375 0.94804 1.20689 1.02500 0.98744 0.95106 0.87758 0.86493 0.88153 0.89758 0.87715 0.95855 0.98367 0.92353 0.85122 0.81391 0.81438 0.91399 0.86493 0.91053 0.91524 0.89870 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.18 -5.63 9.80 25.65 0.25 -5.38 16 3 C 0.13 4.41 5.62 85.63 0.48 4.90 16 4 N -0.59 -26.94 2.45 -833.90 -2.05 -28.98 16 5 C 0.26 14.79 5.18 85.63 0.44 15.23 16 6 C -0.55 -32.00 9.39 25.60 0.24 -31.76 16 7 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 8 C 0.01 0.53 5.46 84.65 0.46 0.99 16 9 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 10 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 C 0.55 25.58 6.49 86.79 0.56 26.14 16 15 O -0.59 -32.91 14.73 -3.90 -0.06 -32.97 16 16 C -0.10 -3.44 4.95 -20.10 -0.10 -3.54 16 17 C -0.13 -3.81 7.61 22.54 0.17 -3.64 16 18 C -0.08 -1.50 10.03 22.22 0.22 -1.28 16 19 C -0.18 -3.44 9.03 22.42 0.20 -3.23 16 20 C 0.12 3.06 6.65 22.47 0.15 3.21 16 21 O -0.33 -7.33 9.44 -92.55 -0.87 -8.21 16 22 C 0.02 0.18 9.81 113.37 1.11 1.29 16 23 C -0.10 -3.16 5.93 -19.50 -0.12 -3.28 16 24 C -0.11 -3.88 9.36 71.23 0.67 -3.21 16 25 H 0.10 2.59 7.84 -2.91 -0.02 2.56 16 26 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.08 2.96 7.68 -2.39 -0.02 2.94 16 29 H 0.11 3.13 4.56 -2.38 -0.01 3.12 16 30 H 0.02 1.33 8.07 -2.39 -0.02 1.32 16 31 H 0.00 -0.12 7.35 -2.39 -0.02 -0.13 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.13 3.69 7.38 -2.91 -0.02 3.66 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.17 1.83 6.28 -2.91 -0.02 1.81 16 36 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 37 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.48 7.36 -2.39 -0.02 2.46 16 41 H 0.05 2.24 5.95 -2.39 -0.01 2.23 16 Total: -1.00 -77.57 344.75 6.08 -71.50 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.02 Total: 14.89 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.72 Total: -6.85 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.76 Total: -85.58 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.93 Total: -41.17 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.57 6.08 -71.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.251 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds