Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99682 * 2 1 4 4 H 1.48503 * 109.46482 * 269.99372 * 3 2 1 5 5 H 1.48493 * 109.47266 * 29.99280 * 3 2 1 6 6 H 1.48500 * 109.47069 * 149.99434 * 3 2 1 7 7 C 1.37871 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00350 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00152 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49988 * 59.93216 * 9 7 2 11 11 C 1.53040 * 109.49727 * 179.97438 * 9 7 2 12 12 C 1.53049 * 109.53629 * 181.35081 * 11 9 7 13 13 C 1.53195 * 109.30654 * 298.63101 * 12 11 9 14 14 N 1.46922 * 108.77751 * 54.63997 * 13 12 11 15 15 C 1.34771 * 120.63391 * 126.36426 * 14 13 12 16 16 O 1.21613 * 120.00235 * 185.86618 * 15 14 13 17 17 C 1.47381 * 120.00156 * 5.86666 * 15 14 13 18 18 C 1.47025 * 127.18692 * 35.91744 * 17 15 14 19 19 C 1.34181 * 105.95218 * 179.73926 * 18 17 15 20 20 O 1.34218 * 109.12291 * 0.02562 * 19 18 17 21 21 C 1.33646 * 110.90999 * 359.97438 * 20 19 18 22 22 C 1.50704 * 125.80316 * 180.02562 * 21 20 19 23 23 C 1.52994 * 117.49597 * 8.59715 * 22 21 20 24 24 C 1.53001 * 117.49676 * 299.97412 * 22 21 20 25 25 C 1.46930 * 118.73805 * 306.63973 * 14 13 12 26 26 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46289 * 61.32832 * 11 9 7 28 28 H 1.09001 * 109.45910 * 301.36531 * 11 9 7 29 29 H 1.08994 * 109.49492 * 178.68582 * 12 11 9 30 30 H 1.08997 * 109.49978 * 58.57864 * 12 11 9 31 31 H 1.09003 * 109.58719 * 294.84460 * 13 12 11 32 32 H 1.09007 * 109.69802 * 174.49560 * 13 12 11 33 33 H 1.08001 * 127.02457 * 359.75232 * 18 17 15 34 34 H 1.08001 * 125.43627 * 180.02562 * 19 18 17 35 35 H 1.08993 * 115.55127 * 154.30681 * 22 21 20 36 36 H 1.09000 * 117.50098 * 359.97438 * 23 22 21 37 37 H 1.08997 * 117.49727 * 145.02261 * 23 22 21 38 38 H 1.08989 * 117.50095 * 214.97678 * 24 22 21 39 39 H 1.08999 * 117.50033 * 359.97438 * 24 22 21 40 40 H 1.08999 * 109.59182 * 173.14945 * 25 14 13 41 41 H 1.09004 * 109.58465 * 293.57552 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4404 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5571 -0.8889 11 6 2.2452 -3.6627 0.0005 12 6 1.4812 -4.9885 -0.0335 13 6 0.6055 -5.1007 1.2185 14 7 -0.2532 -3.9115 1.3031 15 6 -1.5896 -4.0367 1.4241 16 8 -2.2988 -3.0494 1.3860 17 6 -2.1917 -5.3699 1.6027 18 6 -1.6369 -6.5014 2.3601 19 6 -2.5315 -7.4950 2.2469 20 8 -3.5638 -7.0743 1.4994 21 6 -3.3829 -5.8104 1.1046 22 6 -4.3333 -5.0079 0.2538 23 6 -5.7074 -5.6154 -0.0353 24 6 -4.6546 -5.5428 -1.1432 25 6 0.3722 -2.5831 1.2471 26 1 -0.4850 0.8400 -0.0004 27 1 2.8560 -3.6186 0.9022 28 1 2.8878 -3.5914 -0.8770 29 1 2.1900 -5.8162 -0.0570 30 1 0.8513 -5.0227 -0.9223 31 1 1.2390 -5.1578 2.1037 32 1 -0.0143 -5.9951 1.1544 33 1 -0.7006 -6.5274 2.8978 34 1 -2.4360 -8.4767 2.6871 35 1 -4.2768 -3.9265 0.3778 36 1 -5.9238 -6.5956 0.3894 37 1 -6.5552 -4.9336 -0.1014 38 1 -4.8098 -4.8134 -1.9380 39 1 -4.1782 -6.4749 -1.4471 40 1 -0.4013 -1.8167 1.1996 41 1 0.9864 -2.4308 2.1347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -16.775541 kcal Electronic energy + Delta-G solvation = -23501.334834 eV Core-core repulsion = 20154.762909 eV Total energy + Delta-G solvation = -3346.571924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.58890 -40.78544 -38.41222 -37.97195 -35.41509 -34.03106 -33.20363 -31.51884 -30.67907 -27.29293 -26.62571 -24.34358 -23.65131 -23.48355 -23.29907 -21.81571 -20.91585 -19.62557 -18.73364 -18.09199 -17.53987 -16.99534 -16.76934 -16.46726 -16.40825 -15.85745 -15.41505 -15.21612 -14.75340 -14.58374 -14.23205 -14.15661 -13.82722 -13.50775 -13.41063 -13.03917 -12.89002 -12.68229 -12.49383 -12.29531 -12.22928 -11.96687 -11.87894 -11.65696 -11.47324 -11.15995 -10.97367 -10.86153 -10.56402 -10.48183 -9.52510 -9.31678 -8.11423 -6.29613 0.38655 1.17808 1.39710 1.40803 1.51803 1.76807 2.06714 2.33487 2.42715 2.86409 3.16400 3.38278 3.67255 3.75077 3.97808 4.01273 4.07061 4.16082 4.19880 4.34197 4.53880 4.56648 4.66375 4.68880 4.76461 4.79842 4.85209 4.87297 5.01411 5.05304 5.07039 5.14921 5.23301 5.25323 5.34298 5.41936 5.54083 5.63920 5.87527 5.98125 6.07433 6.31511 6.66152 6.83615 7.30042 7.41140 8.92014 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.004741 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.461654 B = 5904.996577 C = 6697.576795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.039 3.961 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.099 3.901 14 N -0.601 5.601 15 C 0.569 3.431 16 O -0.592 6.592 17 C -0.254 4.254 18 C -0.200 4.200 19 C -0.016 4.016 20 O -0.174 6.174 21 C 0.089 3.911 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.155 4.155 25 C 0.125 3.875 26 H 0.259 0.741 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.179 0.821 34 H 0.261 0.739 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -19.648 2.958 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.020 3.980 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.023 4.023 14 N -0.332 5.332 15 C 0.359 3.641 16 O -0.474 6.474 17 C -0.258 4.258 18 C -0.218 4.218 19 C -0.081 4.081 20 O -0.070 6.070 21 C 0.036 3.964 22 C -0.145 4.145 23 C -0.176 4.176 24 C -0.192 4.192 25 C 0.003 3.997 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.196 0.804 34 H 0.277 0.723 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.673 -19.198 2.879 20.225 hybrid contribution 0.609 1.854 0.013 1.951 sum -5.064 -17.344 2.891 18.299 Atomic orbital electron populations 1.70108 1.07536 1.27262 1.50587 1.25932 0.95549 1.03059 0.94522 0.85529 0.78791 0.78910 0.78295 1.20032 1.21370 1.18439 1.21517 0.93332 0.91395 1.51233 0.91791 1.18815 0.93062 0.94022 0.92115 1.00008 1.21522 0.97620 0.94037 1.01066 1.21920 0.98886 0.98414 0.97199 1.22238 0.93513 0.87570 0.98956 1.48328 1.05670 1.08919 1.70284 1.17958 0.82199 0.87927 0.75991 1.90733 1.61955 1.41108 1.53644 1.21157 0.98456 0.95932 1.10252 1.23126 1.03273 0.90919 1.04524 1.24802 0.85021 1.01644 0.96641 1.83703 1.43078 1.25351 1.54854 1.21547 0.94146 0.83063 0.97651 1.20645 0.97898 0.97428 0.98557 1.23138 0.90669 1.03217 1.00583 1.23165 1.02301 1.03371 0.90366 1.21645 0.97234 0.82679 0.98116 0.93151 0.92156 0.92868 0.87559 0.93782 0.89922 0.87303 0.80406 0.72306 0.86937 0.86657 0.86381 0.87230 0.87453 0.90523 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.24 11.39 21.44 0.24 -57.00 16 2 C 0.01 0.50 5.31 84.65 0.45 0.95 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 2.05 2.24 -11.61 -0.03 2.02 16 10 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 11 C -0.10 -4.19 5.11 30.62 0.16 -4.03 16 12 C -0.13 -3.99 6.08 30.68 0.19 -3.81 16 13 C 0.10 3.07 5.47 86.36 0.47 3.54 16 14 N -0.60 -26.08 2.98 -823.65 -2.45 -28.54 16 15 C 0.57 25.82 7.50 86.65 0.65 26.47 16 16 O -0.59 -32.64 15.07 -4.07 -0.06 -32.70 16 17 C -0.25 -8.73 5.45 -18.99 -0.10 -8.84 16 18 C -0.20 -4.63 8.69 23.65 0.21 -4.42 16 19 C -0.02 -0.28 12.03 66.89 0.80 0.53 16 20 O -0.17 -4.09 10.23 4.49 0.05 -4.04 16 21 C 0.09 2.74 6.85 25.26 0.17 2.91 16 22 C -0.13 -3.86 5.91 -11.54 -0.07 -3.92 16 23 C -0.14 -2.90 10.17 30.59 0.31 -2.59 16 24 C -0.16 -3.61 10.23 30.60 0.31 -3.30 16 25 C 0.13 6.57 5.39 86.22 0.46 7.04 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 2.83 4.55 -2.38 -0.01 2.82 16 33 H 0.18 3.26 7.23 -2.91 -0.02 3.24 16 34 H 0.26 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.11 4.28 6.89 -2.39 -0.02 4.26 16 36 H 0.12 2.04 7.96 -2.39 -0.02 2.02 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 4.79 5.11 -2.39 -0.01 4.78 16 41 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -78.49 332.78 5.04 -73.45 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.03 Total: 19.26 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.21 Total: -17.47 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.21 Total: -85.54 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.02 Total: -36.74 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -78.49 5.04 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.675 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds