Wall clock time and date at job start Tue Mar 31 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00231 * 2 1 4 4 H 1.48502 * 109.46873 * 270.00398 * 3 2 1 5 5 H 1.48504 * 109.47025 * 29.99695 * 3 2 1 6 6 H 1.48496 * 109.47337 * 150.00326 * 3 2 1 7 7 C 1.37874 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00359 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49641 * 300.06328 * 9 7 2 11 11 C 1.53041 * 109.49935 * 180.02562 * 9 7 2 12 12 C 1.53035 * 109.54077 * 178.68296 * 11 9 7 13 13 C 1.53191 * 109.31406 * 61.36440 * 12 11 9 14 14 N 1.46935 * 108.77236 * 305.36683 * 13 12 11 15 15 C 1.34773 * 120.62621 * 233.58159 * 14 13 12 16 16 O 1.21616 * 119.99465 * 184.28612 * 15 14 13 17 17 C 1.47383 * 120.00526 * 4.28872 * 15 14 13 18 18 C 1.47015 * 127.19124 * 311.23310 * 17 15 14 19 19 C 1.34174 * 105.95258 * 179.97438 * 18 17 15 20 20 O 1.34213 * 109.12899 * 359.97438 * 19 18 17 21 21 C 1.33652 * 110.90500 * 359.97438 * 20 19 18 22 22 C 1.50699 * 125.80477 * 179.97438 * 21 20 19 23 23 C 1.53007 * 117.49459 * 8.59811 * 22 21 20 24 24 C 1.52997 * 60.00052 * 252.51209 * 23 22 21 25 25 C 1.46921 * 118.73875 * 53.86185 * 14 13 12 26 26 H 0.97008 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46348 * 58.66188 * 11 9 7 28 28 H 1.09005 * 109.45916 * 298.70333 * 11 9 7 29 29 H 1.09008 * 109.50010 * 301.41498 * 12 11 9 30 30 H 1.09000 * 109.50163 * 181.31578 * 12 11 9 31 31 H 1.08999 * 109.59134 * 185.58142 * 13 12 11 32 32 H 1.08999 * 109.70114 * 65.22062 * 13 12 11 33 33 H 1.07996 * 127.02556 * 0.21842 * 18 17 15 34 34 H 1.08004 * 125.43568 * 180.02562 * 19 18 17 35 35 H 1.09000 * 115.55499 * 154.30373 * 22 21 20 36 36 H 1.09000 * 117.49835 * 0.02562 * 23 22 21 37 37 H 1.09003 * 117.49578 * 145.02155 * 23 22 21 38 38 H 1.09004 * 117.49957 * 252.51534 * 24 23 22 39 39 H 1.09000 * 117.52171 * 107.48027 * 24 23 22 40 40 H 1.08999 * 109.59132 * 65.92239 * 25 14 13 41 41 H 1.09003 * 109.58743 * 186.34984 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6236 -2.5562 0.8913 11 6 2.2449 -3.6628 0.0027 12 6 1.4809 -4.9884 0.0371 13 6 0.6056 -5.1014 -1.2151 14 7 -0.2530 -3.9120 -1.3006 15 6 -1.5893 -4.0373 -1.4230 16 8 -2.2816 -3.0485 -1.5712 17 6 -2.2116 -5.3725 -1.3772 18 6 -1.8047 -6.5689 -2.1284 19 6 -2.6571 -7.5396 -1.7659 20 8 -3.5315 -7.0469 -0.8749 21 6 -3.2844 -5.7570 -0.6273 22 6 -4.0604 -4.8762 0.3177 23 6 -5.1042 -5.5475 1.2127 24 6 -5.5512 -4.6783 0.0356 25 6 0.3735 -2.5838 -1.2565 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5911 0.8805 28 1 2.8560 -3.6192 -0.8988 29 1 0.8506 -5.0223 0.9258 30 1 2.1896 -5.8163 0.0614 31 1 -0.0143 -5.9954 -1.1482 32 1 1.2377 -5.1603 -2.1011 33 1 -0.9845 -6.6509 -2.8262 34 1 -2.6415 -8.5556 -2.1321 35 1 -3.5101 -4.0315 0.7321 36 1 -5.2292 -6.6262 1.1182 37 1 -5.2406 -5.1445 2.2162 38 1 -5.9816 -3.7034 0.2648 39 1 -5.9704 -5.1847 -0.8338 40 1 0.9888 -2.4403 -2.1447 41 1 -0.3995 -1.8163 -1.2170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:45 Heat of formation + Delta-G solvation = 2.002733 kcal Electronic energy + Delta-G solvation = -23523.790025 eV Core-core repulsion = 20178.032388 eV Total energy + Delta-G solvation = -3345.757637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50259 -39.12033 -37.11743 -36.50691 -33.54979 -32.58894 -31.59622 -29.75808 -29.57347 -25.38407 -24.93843 -23.17572 -22.53043 -22.19037 -21.81647 -20.53838 -19.31643 -18.30673 -17.24574 -16.29282 -16.18535 -15.88262 -15.28951 -15.19957 -14.52773 -14.32791 -14.13735 -13.69943 -13.19387 -13.12306 -12.73318 -12.54401 -12.38274 -12.16306 -11.85021 -11.72289 -11.59969 -10.98940 -10.92738 -10.89853 -10.49841 -10.45690 -10.40083 -10.21683 -9.87484 -9.58148 -9.28835 -9.08529 -8.87262 -8.42153 -8.34956 -7.67850 -5.98646 -4.07140 1.62054 2.24801 2.83621 3.31462 3.38994 3.41090 3.45157 3.85003 3.91450 4.39965 4.44162 4.76359 4.90006 4.94573 5.05872 5.26912 5.31711 5.41866 5.52317 5.56343 5.57387 5.70771 5.78064 5.83875 6.04130 6.04847 6.07757 6.10828 6.23850 6.34752 6.36753 6.63136 6.70787 6.88599 6.99628 7.12183 7.20449 7.33516 7.65817 7.88827 8.01580 8.30858 8.40409 8.91937 8.98541 9.58397 11.06861 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.004881 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.448298 B = 5734.625509 C = 6599.754911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.103 3.897 14 N -0.597 5.597 15 C 0.577 3.423 16 O -0.533 6.533 17 C -0.213 4.213 18 C -0.187 4.187 19 C -0.044 4.044 20 O -0.178 6.178 21 C 0.082 3.918 22 C -0.081 4.081 23 C -0.171 4.171 24 C -0.157 4.157 25 C 0.113 3.887 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.156 0.844 34 H 0.206 0.794 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -15.810 -1.275 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.021 4.021 14 N -0.329 5.329 15 C 0.363 3.637 16 O -0.411 6.411 17 C -0.217 4.217 18 C -0.206 4.206 19 C -0.110 4.110 20 O -0.075 6.075 21 C 0.030 3.970 22 C -0.099 4.099 23 C -0.208 4.208 24 C -0.194 4.194 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.174 0.826 34 H 0.222 0.778 35 H 0.158 0.842 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.676 -15.293 -1.227 16.732 hybrid contribution 0.899 0.797 -0.283 1.235 sum -5.776 -14.496 -1.510 15.677 Atomic orbital electron populations 1.69891 1.05746 1.26812 1.49380 1.25049 0.94877 0.99235 0.94835 0.86595 0.79801 0.83497 0.78120 1.20642 1.21211 1.19943 1.21084 0.92901 0.90141 1.51805 0.92378 1.19041 0.92627 0.92264 0.93892 0.95317 1.21632 0.98543 0.94162 1.00507 1.21938 0.98552 0.98965 0.97659 1.21826 0.93512 0.88599 0.98125 1.48371 1.05030 1.08992 1.70484 1.17287 0.82303 0.86613 0.77448 1.90803 1.62013 1.38605 1.49636 1.21328 1.00219 0.96048 1.04117 1.22856 1.02488 0.91424 1.03860 1.23761 0.92103 0.99858 0.95286 1.83659 1.49287 1.23731 1.50827 1.21458 0.95515 0.81667 0.98373 1.20539 0.91026 0.99145 0.99170 1.23051 1.02173 0.99577 0.96027 1.23022 0.94473 1.02011 0.99849 1.22389 0.98613 0.81144 0.98510 0.92669 0.93066 0.93217 0.92252 0.92346 0.90189 0.92292 0.82618 0.77777 0.84214 0.88241 0.87827 0.87540 0.88509 0.93974 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 11.41 55.43 0.63 -25.10 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.24 5.10 -26.69 -0.14 -2.37 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C 0.10 1.70 5.98 -3.71 -0.02 1.68 16 14 N -0.60 -12.53 2.97 -173.78 -0.52 -13.05 16 15 C 0.58 12.40 7.36 -12.54 -0.09 12.31 16 16 O -0.53 -13.53 16.40 5.26 0.09 -13.44 16 17 C -0.21 -3.68 5.27 -103.28 -0.54 -4.23 16 18 C -0.19 -2.46 8.77 -37.46 -0.33 -2.79 16 19 C -0.04 -0.49 12.03 29.30 0.35 -0.13 16 20 O -0.18 -2.39 10.23 7.66 0.08 -2.32 16 21 C 0.08 1.29 6.85 -34.96 -0.24 1.05 16 22 C -0.08 -1.20 5.88 -91.77 -0.54 -1.74 16 23 C -0.17 -1.92 10.17 -26.73 -0.27 -2.19 16 24 C -0.16 -1.92 10.23 -26.73 -0.27 -2.19 16 25 C 0.11 2.80 5.42 -3.49 -0.02 2.79 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.16 4.49 -51.93 -0.23 0.93 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.16 1.74 7.71 -52.49 -0.40 1.33 16 34 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.14 2.35 8.13 -51.93 -0.42 1.93 16 36 H 0.10 1.04 7.96 -51.93 -0.41 0.62 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.12 3.50 5.17 -51.93 -0.27 3.23 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -32.20 336.14 -8.48 -40.68 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.93 Total: 4.09 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.87 Total: -12.22 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.12 Total: -38.15 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.16 Total: -15.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.20 -8.48 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.687 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds