Wall clock time and date at job start Tue Mar 31 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00231 * 2 1 4 4 H 1.48502 * 109.46873 * 270.00398 * 3 2 1 5 5 H 1.48504 * 109.47025 * 29.99695 * 3 2 1 6 6 H 1.48496 * 109.47337 * 150.00326 * 3 2 1 7 7 C 1.37874 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00359 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49641 * 300.06328 * 9 7 2 11 11 C 1.53041 * 109.49935 * 180.02562 * 9 7 2 12 12 C 1.53035 * 109.54077 * 178.68296 * 11 9 7 13 13 C 1.53191 * 109.31406 * 61.36440 * 12 11 9 14 14 N 1.46935 * 108.77236 * 305.36683 * 13 12 11 15 15 C 1.34773 * 120.62621 * 233.58159 * 14 13 12 16 16 O 1.21616 * 119.99465 * 184.28612 * 15 14 13 17 17 C 1.47383 * 120.00526 * 4.28872 * 15 14 13 18 18 C 1.47015 * 127.19124 * 311.23310 * 17 15 14 19 19 C 1.34174 * 105.95258 * 179.97438 * 18 17 15 20 20 O 1.34213 * 109.12899 * 359.97438 * 19 18 17 21 21 C 1.33652 * 110.90500 * 359.97438 * 20 19 18 22 22 C 1.50699 * 125.80477 * 179.97438 * 21 20 19 23 23 C 1.53007 * 117.49459 * 8.59811 * 22 21 20 24 24 C 1.52997 * 60.00052 * 252.51209 * 23 22 21 25 25 C 1.46921 * 118.73875 * 53.86185 * 14 13 12 26 26 H 0.97008 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46348 * 58.66188 * 11 9 7 28 28 H 1.09005 * 109.45916 * 298.70333 * 11 9 7 29 29 H 1.09008 * 109.50010 * 301.41498 * 12 11 9 30 30 H 1.09000 * 109.50163 * 181.31578 * 12 11 9 31 31 H 1.08999 * 109.59134 * 185.58142 * 13 12 11 32 32 H 1.08999 * 109.70114 * 65.22062 * 13 12 11 33 33 H 1.07996 * 127.02556 * 0.21842 * 18 17 15 34 34 H 1.08004 * 125.43568 * 180.02562 * 19 18 17 35 35 H 1.09000 * 115.55499 * 154.30373 * 22 21 20 36 36 H 1.09000 * 117.49835 * 0.02562 * 23 22 21 37 37 H 1.09003 * 117.49578 * 145.02155 * 23 22 21 38 38 H 1.09004 * 117.49957 * 252.51534 * 24 23 22 39 39 H 1.09000 * 117.52171 * 107.48027 * 24 23 22 40 40 H 1.08999 * 109.59132 * 65.92239 * 25 14 13 41 41 H 1.09003 * 109.58743 * 186.34984 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6236 -2.5562 0.8913 11 6 2.2449 -3.6628 0.0027 12 6 1.4809 -4.9884 0.0371 13 6 0.6056 -5.1014 -1.2151 14 7 -0.2530 -3.9120 -1.3006 15 6 -1.5893 -4.0373 -1.4230 16 8 -2.2816 -3.0485 -1.5712 17 6 -2.2116 -5.3725 -1.3772 18 6 -1.8047 -6.5689 -2.1284 19 6 -2.6571 -7.5396 -1.7659 20 8 -3.5315 -7.0469 -0.8749 21 6 -3.2844 -5.7570 -0.6273 22 6 -4.0604 -4.8762 0.3177 23 6 -5.1042 -5.5475 1.2127 24 6 -5.5512 -4.6783 0.0356 25 6 0.3735 -2.5838 -1.2565 26 1 -0.4850 0.8401 0.0004 27 1 2.8872 -3.5911 0.8805 28 1 2.8560 -3.6192 -0.8988 29 1 0.8506 -5.0223 0.9258 30 1 2.1896 -5.8163 0.0614 31 1 -0.0143 -5.9954 -1.1482 32 1 1.2377 -5.1603 -2.1011 33 1 -0.9845 -6.6509 -2.8262 34 1 -2.6415 -8.5556 -2.1321 35 1 -3.5101 -4.0315 0.7321 36 1 -5.2292 -6.6262 1.1182 37 1 -5.2406 -5.1445 2.2162 38 1 -5.9816 -3.7034 0.2648 39 1 -5.9704 -5.1847 -0.8338 40 1 0.9888 -2.4403 -2.1447 41 1 -0.3995 -1.8163 -1.2170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:45 Heat of formation + Delta-G solvation = -17.300367 kcal Electronic energy + Delta-G solvation = -23524.627070 eV Core-core repulsion = 20178.032388 eV Total energy + Delta-G solvation = -3346.594682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.58074 -40.78213 -38.38125 -37.99837 -35.39067 -34.02260 -33.21695 -31.50531 -30.69036 -27.29033 -26.60983 -24.38579 -23.65033 -23.47832 -23.29745 -21.81747 -20.89355 -19.62527 -18.78743 -18.13118 -17.46787 -17.16216 -16.73989 -16.44729 -16.37512 -15.83806 -15.44329 -15.22326 -14.77220 -14.58074 -14.22508 -14.16643 -13.83939 -13.50479 -13.41890 -13.02076 -12.89620 -12.69655 -12.49302 -12.31592 -12.25496 -11.97447 -11.87978 -11.66526 -11.47109 -11.20047 -10.98797 -10.87142 -10.58095 -10.47416 -9.51782 -9.33643 -8.12450 -6.29801 0.45151 1.20350 1.40004 1.40381 1.51573 1.76622 1.91469 2.33568 2.42589 2.84152 3.15995 3.39465 3.65723 3.73337 3.98968 4.02008 4.06898 4.15313 4.16494 4.33484 4.53047 4.56402 4.66537 4.68041 4.75207 4.78526 4.84777 4.87175 4.97954 5.02927 5.06083 5.14813 5.22331 5.24673 5.33816 5.41674 5.53490 5.62418 5.86129 5.95864 6.07590 6.30736 6.63806 6.82816 7.27712 7.40713 8.91418 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.004881 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.448298 B = 5734.625509 C = 6599.754911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.040 3.960 10 H -0.015 1.015 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.099 3.901 14 N -0.601 5.601 15 C 0.570 3.430 16 O -0.591 6.591 17 C -0.249 4.249 18 C -0.201 4.201 19 C -0.014 4.014 20 O -0.173 6.173 21 C 0.082 3.918 22 C -0.121 4.121 23 C -0.139 4.139 24 C -0.153 4.153 25 C 0.126 3.874 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.178 0.822 34 H 0.262 0.738 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -19.301 -1.693 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.021 3.979 10 H 0.003 0.997 11 C -0.143 4.143 12 C -0.163 4.163 13 C -0.023 4.023 14 N -0.332 5.332 15 C 0.359 3.641 16 O -0.473 6.473 17 C -0.253 4.253 18 C -0.219 4.219 19 C -0.079 4.079 20 O -0.069 6.069 21 C 0.029 3.971 22 C -0.139 4.139 23 C -0.175 4.175 24 C -0.190 4.190 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.195 0.805 34 H 0.277 0.723 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.056 0.944 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.892 -18.836 -1.638 19.804 hybrid contribution 0.637 1.839 -0.148 1.952 sum -5.255 -16.997 -1.786 17.880 Atomic orbital electron populations 1.70101 1.07531 1.27285 1.50616 1.25922 0.95554 1.03040 0.94510 0.85531 0.78759 0.78931 0.78313 1.20028 1.21298 1.18553 1.21518 0.93333 0.91404 1.51183 0.91816 1.18967 0.93044 0.93972 0.91933 0.99717 1.21524 0.97632 0.94043 1.01065 1.21904 0.98868 0.98390 0.97156 1.22177 0.93539 0.87560 0.98983 1.48396 1.05667 1.08995 1.70094 1.17976 0.82139 0.87946 0.76005 1.90751 1.63239 1.41093 1.52179 1.21138 1.01882 0.95216 1.07097 1.23057 1.04344 0.89903 1.04645 1.24796 0.89424 1.01164 0.92482 1.83696 1.49729 1.22202 1.51313 1.21443 0.94906 0.82662 0.98070 1.20431 0.92125 0.99565 1.01770 1.23164 0.98038 1.00250 0.96061 1.23119 0.92169 1.02765 1.00969 1.21828 0.97122 0.82540 0.98118 0.93138 0.92808 0.92230 0.93654 0.87646 0.87385 0.90032 0.80490 0.72267 0.87992 0.86506 0.86353 0.87327 0.87697 0.94445 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 11.41 21.45 0.24 -56.71 16 2 C 0.01 0.52 5.30 84.65 0.45 0.97 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.11 8.56 25.60 0.22 -29.89 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.09 2.26 -11.32 -0.03 2.06 16 10 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 11 C -0.10 -4.19 5.10 30.62 0.16 -4.03 16 12 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 13 C 0.10 3.10 5.98 86.36 0.52 3.62 16 14 N -0.60 -26.12 2.97 -821.98 -2.44 -28.56 16 15 C 0.57 25.89 7.36 86.65 0.64 26.53 16 16 O -0.59 -32.70 16.40 -4.08 -0.07 -32.77 16 17 C -0.25 -8.62 5.27 -18.99 -0.10 -8.72 16 18 C -0.20 -4.68 8.77 23.65 0.21 -4.47 16 19 C -0.01 -0.24 12.03 66.89 0.80 0.57 16 20 O -0.17 -4.11 10.23 4.49 0.05 -4.07 16 21 C 0.08 2.54 6.85 25.26 0.17 2.72 16 22 C -0.12 -3.72 5.88 -11.54 -0.07 -3.78 16 23 C -0.14 -2.93 10.17 30.60 0.31 -2.61 16 24 C -0.15 -3.75 10.23 30.59 0.31 -3.44 16 25 C 0.13 6.60 5.42 86.51 0.47 7.07 16 26 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.11 2.83 4.49 -2.39 -0.01 2.82 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.18 3.25 7.71 -2.91 -0.02 3.23 16 34 H 0.26 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.10 3.86 8.13 -2.39 -0.02 3.84 16 36 H 0.12 2.09 7.96 -2.39 -0.02 2.07 16 37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 4.70 5.17 -2.39 -0.01 4.69 16 Total: -1.00 -78.20 336.14 5.09 -73.12 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.03 Total: 19.22 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.25 Total: -17.18 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.19 Total: -85.27 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.02 Total: -36.83 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.20 5.09 -73.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.817 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds