Wall clock time and date at job start Tue Mar 31 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 120.00497 * 2 1 4 4 C 1.38209 * 120.00360 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99608 * 359.95143 * 5 4 3 7 7 C 1.38218 * 119.99535 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00057 * 0.02562 * 7 2 1 9 9 O 1.42897 * 109.46944 * 180.02562 * 8 7 2 10 10 C 1.42903 * 114.00060 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47160 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99904 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99680 * 180.02562 * 11 10 9 14 14 C 1.37103 * 119.99510 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99141 * 140.26200 * 14 13 11 16 16 C 1.38942 * 120.00323 * 320.26458 * 14 13 11 17 17 N 1.31414 * 120.00002 * 161.32809 * 16 14 13 18 18 Si 1.86807 * 119.99989 * 341.32332 * 16 14 13 19 19 H 1.48496 * 109.46829 * 93.60997 * 18 16 14 20 20 H 1.48500 * 109.47054 * 213.60932 * 18 16 14 21 21 H 1.48492 * 109.47005 * 333.61337 * 18 16 14 22 22 C 1.46498 * 120.00393 * 0.02562 * 13 11 10 23 23 C 1.52996 * 117.50032 * 182.39405 * 22 13 11 24 24 C 1.53000 * 117.50136 * 113.73160 * 22 13 11 25 25 H 1.09001 * 109.47626 * 270.02677 * 1 2 3 26 26 H 1.09001 * 109.47196 * 30.02350 * 1 2 3 27 27 H 1.08993 * 109.47544 * 150.02204 * 1 2 3 28 28 H 1.07999 * 119.99615 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99986 * 179.97438 * 4 3 2 30 30 H 1.07994 * 120.00239 * 179.97438 * 5 4 3 31 31 H 1.08008 * 119.99728 * 180.32485 * 6 5 4 32 32 H 1.09003 * 109.47086 * 300.02465 * 8 7 2 33 33 H 1.09002 * 109.46943 * 60.02007 * 8 7 2 34 34 H 1.08998 * 109.47417 * 300.00489 * 10 9 8 35 35 H 1.09002 * 109.46721 * 60.00567 * 10 9 8 36 36 H 0.96996 * 119.99912 * 179.97438 * 17 16 14 37 37 H 1.09002 * 115.54322 * 328.06022 * 22 13 11 38 38 H 1.08998 * 117.50000 * 0.02562 * 23 22 13 39 39 H 1.09002 * 117.49761 * 145.01625 * 23 22 13 40 40 H 1.08997 * 117.49638 * 214.97511 * 24 22 13 41 41 H 1.09001 * 117.49756 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1971 0.0010 7 6 2.1980 -1.1971 0.0005 8 6 1.4444 -2.5021 0.0005 9 8 2.3729 -3.5883 0.0017 10 6 1.7583 -4.8784 0.0024 11 6 2.8250 -5.9429 0.0030 12 8 3.9962 -5.6279 0.0034 13 7 2.4773 -7.2451 0.0032 14 6 3.4478 -8.2136 0.0043 15 1 3.3213 -9.1039 0.6025 16 6 4.5938 -8.0497 -0.7640 17 7 5.6678 -8.7602 -0.5018 18 14 4.6078 -6.8196 -2.1698 19 1 5.1394 -5.5204 -1.6853 20 1 5.4705 -7.3298 -3.2655 21 1 3.2246 -6.6306 -2.6759 22 6 1.0626 -7.6257 0.0022 23 6 0.7326 -9.1185 0.0592 24 6 0.5232 -8.3370 -1.2403 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0001 30 1 5.3516 -0.0003 0.0005 31 1 4.1205 -2.1325 0.0063 32 1 0.8170 -2.5594 0.8901 33 1 0.8183 -2.5601 -0.8899 34 1 1.1377 -4.9848 0.8921 35 1 1.1387 -4.9860 -0.8878 36 1 6.4677 -8.6460 -1.0385 37 1 0.3916 -6.9416 0.5218 38 1 1.5680 -9.8175 0.0978 39 1 -0.1559 -9.4166 0.6158 40 1 -0.5029 -8.1214 -1.5379 41 1 1.2209 -8.5215 -2.0572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598808950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:34 Heat of formation + Delta-G solvation = -31.924450 kcal Electronic energy + Delta-G solvation = -22866.772309 eV Core-core repulsion = 19519.543479 eV Total energy + Delta-G solvation = -3347.228830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09690 -40.49272 -38.62247 -37.84625 -34.93879 -33.97695 -33.49860 -32.58438 -29.77508 -27.98020 -26.89487 -26.00091 -23.45485 -22.96813 -22.79150 -21.74905 -21.20899 -19.11968 -18.09629 -17.81053 -17.43747 -17.33168 -16.84645 -16.12431 -15.88502 -15.73915 -15.45449 -15.13752 -15.02200 -14.68846 -14.51619 -14.28448 -13.95201 -13.54986 -13.43704 -13.09783 -13.02060 -12.81310 -12.76087 -12.41583 -12.21255 -12.04036 -11.89559 -11.70747 -11.60318 -11.23105 -10.91698 -10.69302 -10.38591 -9.70190 -9.47749 -9.45219 -8.45617 -6.19379 0.38640 0.46567 1.13991 1.27282 1.50388 1.84551 2.12906 2.41172 2.81083 2.91744 3.04655 3.21626 3.73007 3.93556 3.97523 4.03806 4.08149 4.14889 4.19246 4.21656 4.25433 4.33541 4.36675 4.47449 4.51274 4.66563 4.87718 4.88871 4.90211 4.96398 4.97471 5.13833 5.23592 5.32216 5.46911 5.51981 5.61119 5.65141 5.66658 5.80006 6.09531 6.19819 6.72204 6.85779 7.29272 7.81229 8.61225 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.004493 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.996851 B = 6230.980996 C = 7239.192505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.143 4.143 6 C -0.123 4.123 7 C -0.107 4.107 8 C 0.097 3.903 9 O -0.396 6.396 10 C 0.064 3.936 11 C 0.433 3.567 12 O -0.577 6.577 13 N -0.448 5.448 14 C -0.337 4.337 15 H 0.078 0.922 16 C 0.042 3.958 17 N -0.910 5.910 18 Si 0.967 3.033 19 H -0.281 1.281 20 H -0.312 1.312 21 H -0.267 1.267 22 C 0.038 3.962 23 C -0.167 4.167 24 C -0.184 4.184 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.272 0.728 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 17.362 0.069 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.161 4.161 6 C -0.142 4.142 7 C -0.107 4.107 8 C 0.022 3.978 9 O -0.315 6.315 10 C -0.016 4.016 11 C 0.225 3.775 12 O -0.462 6.462 13 N -0.170 5.170 14 C -0.464 4.464 15 H 0.096 0.904 16 C -0.162 4.162 17 N -0.548 5.548 18 Si 0.799 3.201 19 H -0.209 1.209 20 H -0.242 1.242 21 H -0.192 1.192 22 C -0.066 4.066 23 C -0.204 4.204 24 C -0.222 4.222 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.175 0.825 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.914 17.472 0.056 24.318 hybrid contribution 1.117 -0.298 -0.600 1.302 sum -15.798 17.173 -0.544 23.341 Atomic orbital electron populations 1.20904 0.88616 1.04119 1.03560 1.19987 0.97777 0.91452 0.99296 1.21364 0.94166 0.98186 1.00459 1.21461 0.95032 0.98020 0.99256 1.21350 1.00537 0.92741 1.01486 1.21083 0.95097 0.98240 0.99734 1.19766 0.93742 0.94503 1.02655 1.21506 0.90702 0.83127 1.02478 1.87994 1.34135 1.13630 1.95751 1.22211 0.93199 0.81834 1.04315 1.21095 0.90508 0.84483 0.81438 1.90511 1.21580 1.81421 1.52696 1.43266 1.05335 1.03423 1.64977 1.18718 0.98396 1.01751 1.27525 0.90418 1.25907 0.94621 0.96855 0.98796 1.69813 1.02281 1.43232 1.39465 0.85475 0.78064 0.79933 0.76615 1.20865 1.24228 1.19212 1.22347 0.82794 0.97564 1.03915 1.23176 1.03242 0.93043 1.00973 1.23353 1.02582 1.04635 0.91622 0.89733 0.89609 0.90848 0.82825 0.83514 0.85800 0.88458 0.89474 0.89898 0.87241 0.88526 0.91912 0.82452 0.90777 0.84978 0.84564 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.60 71.24 0.68 -0.79 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.88 16 3 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 4 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 5 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 6 C -0.12 -4.10 9.38 22.27 0.21 -3.89 16 7 C -0.11 -2.96 5.88 -19.87 -0.12 -3.07 16 8 C 0.10 2.50 5.05 71.24 0.36 2.86 16 9 O -0.40 -14.73 8.36 -129.94 -1.09 -15.82 16 10 C 0.06 2.15 5.05 71.24 0.36 2.51 16 11 C 0.43 21.03 5.96 87.66 0.52 21.55 16 12 O -0.58 -34.60 11.37 15.98 0.18 -34.42 16 13 N -0.45 -21.25 2.56 -613.14 -1.57 -22.82 16 14 C -0.34 -19.47 8.77 84.04 0.74 -18.74 16 15 H 0.08 4.71 6.95 -2.91 -0.02 4.69 16 16 C 0.04 2.62 4.89 84.92 0.41 3.04 16 17 N -0.91 -59.11 13.96 21.66 0.30 -58.81 16 18 Si 0.97 54.55 24.58 68.60 1.69 56.23 16 19 H -0.28 -17.30 6.09 99.48 0.61 -16.70 16 20 H -0.31 -17.09 7.11 99.48 0.71 -16.39 16 21 H -0.27 -13.95 7.11 99.48 0.71 -13.24 16 22 C 0.04 1.24 5.85 44.99 0.26 1.50 16 23 C -0.17 -5.10 9.80 30.62 0.30 -4.80 16 24 C -0.18 -5.39 10.37 30.62 0.32 -5.07 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 27 H 0.07 0.86 6.64 -2.39 -0.02 0.84 16 28 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 30 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.10 3.99 7.01 -2.91 -0.02 3.97 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.72 7.49 -2.39 -0.02 1.71 16 34 H 0.11 2.78 7.57 -2.39 -0.02 2.76 16 35 H 0.10 2.68 8.11 -2.39 -0.02 2.66 16 36 H 0.27 16.80 8.31 -92.71 -0.77 16.03 16 37 H 0.16 3.67 6.99 -2.39 -0.02 3.65 16 38 H 0.07 2.86 6.48 -2.39 -0.02 2.84 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.86 16 40 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -84.44 335.90 5.03 -79.41 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.92 Total: 11.14 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.60 Total: -14.91 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.27 Total: -81.63 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.90 Total: -50.24 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.69 Total: 56.23 kcal Total: -84.44 5.03 -79.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598808950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.483 kcal (2) G-P(sol) polarization free energy of solvation -84.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds