Wall clock time and date at job start Tue Mar 31 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37816 * 120.04966 * 2 1 4 4 C 1.38515 * 120.30731 * 179.72128 * 3 2 1 5 5 C 1.38124 * 120.40002 * 0.25355 * 4 3 2 6 6 C 1.38645 * 120.08922 * 0.02562 * 5 4 3 7 7 O 1.35663 * 120.15109 * 179.97438 * 6 5 4 8 8 C 1.39725 * 120.05176 * 180.26978 * 2 1 3 9 9 C 1.47431 * 120.19628 * 359.97438 * 8 2 1 10 10 O 1.21623 * 120.00636 * 270.32019 * 9 8 2 11 11 N 1.34776 * 119.99937 * 90.31706 * 9 8 2 12 12 C 1.36901 * 120.00474 * 180.02562 * 11 9 8 13 13 H 1.08003 * 120.00084 * 135.19054 * 12 11 9 14 14 C 1.39023 * 119.99719 * 315.19549 * 12 11 9 15 15 N 1.31384 * 119.99813 * 158.01266 * 14 12 11 16 16 Si 1.86795 * 120.00369 * 338.00616 * 14 12 11 17 17 H 1.48494 * 109.47263 * 86.61299 * 16 14 12 18 18 H 1.48498 * 109.47425 * 206.61973 * 16 14 12 19 19 H 1.48509 * 109.46943 * 326.62122 * 16 14 12 20 20 C 1.46501 * 119.99750 * 0.02562 * 11 9 8 21 21 C 1.54270 * 110.03433 * 242.53039 * 20 11 9 22 22 C 1.54961 * 104.16237 * 217.13618 * 21 20 11 23 23 C 1.54892 * 102.77603 * 37.88616 * 22 21 20 24 24 C 1.53876 * 110.03212 * 125.31492 * 20 11 9 25 25 H 1.09007 * 109.46614 * 90.00532 * 1 2 3 26 26 H 1.08995 * 109.47268 * 209.99769 * 1 2 3 27 27 H 1.08996 * 109.47451 * 330.00586 * 1 2 3 28 28 H 1.07999 * 119.84749 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.80247 * 180.27742 * 4 3 2 30 30 H 1.08001 * 119.95283 * 179.97438 * 5 4 3 31 31 H 0.96702 * 113.99722 * 90.00246 * 7 6 5 32 32 H 0.96996 * 120.00212 * 180.02562 * 15 14 12 33 33 H 1.09006 * 110.01888 * 3.92287 * 20 11 9 34 34 H 1.09001 * 110.48525 * 335.78762 * 21 20 11 35 35 H 1.09005 * 110.48274 * 98.42541 * 21 20 11 36 36 H 1.09004 * 110.72044 * 279.57464 * 22 21 20 37 37 H 1.09000 * 110.92590 * 156.29540 * 22 21 20 38 38 H 1.09001 * 110.48800 * 203.39931 * 23 22 21 39 39 H 1.09001 * 110.59833 * 80.81970 * 23 22 21 40 40 H 1.09001 * 110.03104 * 238.56487 * 24 20 11 41 41 H 1.08997 * 110.03247 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1929 0.0000 4 6 3.5822 1.1992 0.0058 5 6 4.2865 0.0110 0.0064 6 6 3.6090 -1.1987 0.0006 7 8 4.2995 -2.3664 0.0007 8 6 2.2067 -1.2094 -0.0057 9 6 1.4751 -2.4894 -0.0112 10 8 1.1685 -3.0192 1.0398 11 7 1.1458 -3.0724 -1.1808 12 6 0.4660 -4.2606 -1.1860 13 1 -0.3712 -4.4009 -1.8537 14 6 0.8533 -5.2867 -0.3317 15 7 -0.0021 -6.2299 -0.0077 16 14 2.5899 -5.3247 0.3554 17 1 2.6498 -4.5087 1.5946 18 1 2.9685 -6.7264 0.6669 19 1 3.5320 -4.7690 -0.6491 20 6 1.5155 -2.4345 -2.4468 21 6 0.2467 -2.0677 -3.2441 22 6 0.6347 -2.3383 -4.7197 23 6 1.5041 -3.6161 -4.6165 24 6 2.3149 -3.4182 -3.3191 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6554 2.1273 0.0004 29 1 4.1148 2.1387 0.0103 30 1 5.3664 0.0243 0.0105 31 1 4.4960 -2.7071 0.8841 32 1 0.2680 -6.9456 0.5886 33 1 2.1075 -1.5395 -2.2548 34 1 -0.5877 -2.7028 -2.9465 35 1 -0.0031 -1.0163 -3.1011 36 1 1.2141 -1.5085 -5.1245 37 1 -0.2511 -2.5219 -5.3278 38 1 2.1711 -3.6941 -5.4751 39 1 0.8749 -4.5030 -4.5416 40 1 3.2945 -3.0004 -3.5512 41 1 2.4282 -4.3701 -2.8003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:12 Heat of formation + Delta-G solvation = -43.696692 kcal Electronic energy + Delta-G solvation = -24787.152413 eV Core-core repulsion = 21439.413100 eV Total energy + Delta-G solvation = -3347.739313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -40.17922 -38.43341 -36.83394 -36.60285 -33.48793 -32.42030 -31.72062 -29.84948 -28.10446 -27.07057 -26.87226 -24.95127 -22.64402 -21.44909 -20.24637 -20.06649 -19.10698 -17.85260 -17.31470 -16.24332 -15.85265 -15.26378 -15.25434 -14.70292 -14.47089 -14.04505 -13.56831 -13.31616 -13.19572 -13.13838 -12.74379 -12.58876 -12.38566 -11.98572 -11.63147 -11.55506 -11.46174 -11.31006 -10.93118 -10.77083 -10.57659 -10.50515 -10.39937 -10.13987 -9.98947 -9.91935 -9.73760 -8.68201 -8.50806 -8.41417 -8.25180 -7.48157 -6.18538 -3.91127 1.36416 1.44802 3.34857 3.57672 3.61638 3.70653 3.82577 4.39388 4.52094 4.60659 5.02094 5.03394 5.11440 5.16716 5.24094 5.38184 5.43337 5.55776 5.58319 5.75467 5.90241 5.90902 5.99169 6.04637 6.08551 6.13123 6.19129 6.24041 6.39459 6.40660 6.42638 6.49147 6.55027 6.58706 6.75277 6.86066 6.90186 6.97382 7.07823 7.88126 7.88783 8.08043 8.84221 8.97009 9.47919 9.89693 10.88087 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.009346 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.221944 B = 2995.155363 C = 3784.270334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 C -0.135 4.135 4 C -0.102 4.102 5 C -0.156 4.156 6 C 0.128 3.872 7 O -0.489 6.489 8 C -0.120 4.120 9 C 0.498 3.502 10 O -0.543 6.543 11 N -0.441 5.441 12 C -0.341 4.341 13 H 0.095 0.905 14 C 0.097 3.903 15 N -0.862 5.862 16 Si 0.881 3.119 17 H -0.255 1.255 18 H -0.307 1.307 19 H -0.257 1.257 20 C 0.131 3.869 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.388 0.612 32 H 0.271 0.729 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 13.277 -4.608 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.175 4.175 6 C 0.082 3.918 7 O -0.299 6.299 8 C -0.124 4.124 9 C 0.287 3.713 10 O -0.425 6.425 11 N -0.161 5.161 12 C -0.467 4.467 13 H 0.112 0.888 14 C -0.112 4.112 15 N -0.497 5.497 16 Si 0.709 3.291 17 H -0.180 1.180 18 H -0.235 1.235 19 H -0.181 1.181 20 C 0.026 3.974 21 C -0.168 4.168 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.164 4.164 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.245 0.755 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.793 12.866 -4.608 14.843 hybrid contribution 1.035 -0.212 0.861 1.363 sum 6.828 12.654 -3.748 14.859 Atomic orbital electron populations 1.20873 0.90536 1.03431 1.02804 1.19867 0.96388 0.91219 0.96842 1.20920 0.94132 0.97244 1.02997 1.20978 0.94049 0.97382 0.99637 1.21283 1.00198 0.91709 1.04262 1.18565 0.88631 0.85724 0.98836 1.84818 1.75055 1.36736 1.33318 1.20678 0.93356 0.95614 1.02719 1.17948 0.83926 0.83935 0.85516 1.90719 1.56533 1.64277 1.31013 1.43624 1.50129 1.20051 1.02275 1.18588 1.13037 0.88903 1.26176 0.88770 1.25284 0.97795 0.94046 0.94087 1.69765 1.34217 1.13620 1.32061 0.86959 0.84725 0.75711 0.81700 1.18000 1.23510 1.18105 1.21751 0.94557 0.94971 0.86088 1.22716 0.99358 1.00436 0.94332 1.22434 0.99139 0.97686 0.96603 1.22272 0.98226 0.98133 0.96883 1.22364 0.97121 1.01382 0.95566 0.90751 0.90225 0.91556 0.85772 0.85843 0.85532 0.75490 0.91960 0.91295 0.89906 0.92676 0.92330 0.92124 0.92760 0.91227 0.92978 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.61 36.00 0.35 -1.55 16 2 C -0.04 -0.71 5.91 -104.22 -0.62 -1.33 16 3 C -0.13 -1.82 9.68 -39.63 -0.38 -2.20 16 4 C -0.10 -1.29 10.03 -39.52 -0.40 -1.68 16 5 C -0.16 -2.24 9.98 -39.47 -0.39 -2.63 16 6 C 0.13 2.32 6.60 -38.68 -0.26 2.06 16 7 O -0.49 -9.18 11.61 -18.69 -0.22 -9.39 16 8 C -0.12 -2.40 3.57 -104.85 -0.37 -2.77 16 9 C 0.50 12.13 3.39 -12.52 -0.04 12.09 16 10 O -0.54 -15.49 13.05 5.26 0.07 -15.42 16 11 N -0.44 -10.58 2.05 -107.74 -0.22 -10.80 16 12 C -0.34 -9.43 7.92 -15.00 -0.12 -9.55 16 13 H 0.09 2.72 7.07 -52.48 -0.37 2.35 16 14 C 0.10 2.85 4.75 -17.45 -0.08 2.77 16 15 N -0.86 -26.33 13.95 55.50 0.77 -25.56 16 16 Si 0.88 23.38 24.47 -169.99 -4.16 19.22 16 17 H -0.25 -6.99 6.12 56.52 0.35 -6.64 16 18 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 19 H -0.26 -6.54 6.73 56.52 0.38 -6.16 16 20 C 0.13 2.60 3.19 -66.81 -0.21 2.39 16 21 C -0.13 -2.26 6.43 -25.03 -0.16 -2.42 16 22 C -0.12 -1.78 6.91 -24.70 -0.17 -1.95 16 23 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 24 C -0.13 -2.41 6.24 -25.61 -0.16 -2.57 16 25 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 26 H 0.08 1.53 7.09 -51.93 -0.37 1.16 16 27 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.39 6.20 9.00 45.56 0.41 6.61 16 32 H 0.27 7.85 8.31 -40.82 -0.34 7.52 16 33 H 0.07 1.34 6.17 -51.93 -0.32 1.02 16 34 H 0.08 1.63 6.63 -51.93 -0.34 1.28 16 35 H 0.05 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.89 7.17 -51.93 -0.37 1.52 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -33.69 326.33 -7.23 -40.92 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.20 Total: 7.53 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.19 Total: -11.42 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.55 Total: -36.36 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.15 Total: -24.81 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.16 Total: 19.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.69 -7.23 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.777 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds