Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37840 * 120.04233 * 2 1 4 4 C 1.38499 * 120.29645 * 180.25566 * 3 2 1 5 5 C 1.38106 * 120.38949 * 359.44462 * 4 3 2 6 6 C 1.38657 * 120.08640 * 0.27495 * 5 4 3 7 7 O 1.35656 * 120.15367 * 179.97438 * 6 5 4 8 8 C 1.39660 * 120.04787 * 179.70478 * 2 1 3 9 9 C 1.47534 * 120.19329 * 0.02562 * 8 2 1 10 10 O 1.21595 * 120.00034 * 270.02715 * 9 8 2 11 11 N 1.34774 * 120.00187 * 90.01978 * 9 8 2 12 12 C 1.46930 * 120.63084 * 359.72329 * 11 9 8 13 13 C 1.52750 * 109.00915 * 233.58317 * 12 11 9 14 14 C 1.53048 * 109.38550 * 305.58762 * 13 12 11 15 15 C 1.50703 * 109.44908 * 181.25476 * 14 13 12 16 16 H 1.08001 * 119.99417 * 239.93554 * 15 14 13 17 17 C 1.37870 * 120.00248 * 59.94043 * 15 14 13 18 18 N 1.31519 * 119.99774 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00271 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47202 * 89.99663 * 19 17 15 21 21 H 1.48500 * 109.47228 * 210.00117 * 19 17 15 22 22 H 1.48504 * 109.46889 * 329.99790 * 19 17 15 23 23 C 1.53038 * 109.53636 * 61.24145 * 14 13 12 24 24 C 1.46931 * 120.63096 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47485 * 270.29449 * 1 2 3 26 26 H 1.09000 * 109.47145 * 30.30071 * 1 2 3 27 27 H 1.09001 * 109.47100 * 150.29596 * 1 2 3 28 28 H 1.07995 * 119.85287 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.80759 * 179.72616 * 4 3 2 30 30 H 1.07999 * 119.95765 * 180.29943 * 5 4 3 31 31 H 0.96703 * 113.99609 * 89.99975 * 7 6 5 32 32 H 1.08995 * 109.58235 * 353.41772 * 12 11 9 33 33 H 1.08997 * 109.58264 * 113.84171 * 12 11 9 34 34 H 1.08997 * 109.56844 * 185.55290 * 13 12 11 35 35 H 1.09006 * 109.36420 * 65.49522 * 13 12 11 36 36 H 1.08996 * 109.45979 * 301.22171 * 14 13 12 37 37 H 0.97002 * 119.99894 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.49782 * 178.68676 * 23 14 13 39 39 H 1.08993 * 109.52602 * 58.60302 * 23 14 13 40 40 H 1.09004 * 109.58564 * 246.15962 * 24 11 9 41 41 H 1.08997 * 109.58912 * 6.43876 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5821 1.1994 -0.0053 5 6 4.2860 0.0112 0.0008 6 6 3.6081 -1.1983 0.0067 7 8 4.2982 -2.3662 0.0122 8 6 2.2063 -1.2089 0.0062 9 6 1.4740 -2.4896 0.0123 10 8 1.1714 -3.0120 1.0678 11 7 1.1403 -3.0806 -1.1521 12 6 1.4936 -2.4586 -2.4356 13 6 0.2331 -2.3272 -3.2883 14 6 -0.4384 -3.6965 -3.4168 15 6 -1.6653 -3.5744 -4.2834 16 1 -2.6356 -3.8307 -3.8846 17 6 -1.5489 -3.1356 -5.5852 18 7 -0.3672 -2.8230 -6.0706 19 14 -3.0695 -2.9849 -6.6596 20 1 -3.6454 -1.6238 -6.5143 21 1 -2.6980 -3.2165 -8.0786 22 1 -4.0741 -3.9948 -6.2398 23 6 -0.8422 -4.2006 -2.0294 24 6 0.4106 -4.3559 -1.1623 25 1 -0.3634 0.0053 1.0276 26 1 -0.3633 0.8873 -0.5185 27 1 -0.3633 -0.8926 -0.5092 28 1 1.6554 2.1275 -0.0004 29 1 4.1147 2.1389 -0.0098 30 1 5.3659 0.0242 0.0015 31 1 4.4984 -2.7006 0.8973 32 1 1.9177 -1.4704 -2.2581 33 1 2.2202 -3.0823 -2.9561 34 1 0.4993 -1.9583 -4.2788 35 1 -0.4544 -1.6282 -2.8119 36 1 0.2582 -4.4013 -3.8707 37 1 -0.2853 -2.5139 -6.9864 38 1 -1.3412 -5.1651 -2.1238 39 1 -1.5197 -3.4845 -1.5646 40 1 1.0471 -5.1378 -1.5767 41 1 0.1227 -4.6203 -0.1448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599744441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = -63.449669 kcal Electronic energy + Delta-G solvation = -23772.342173 eV Core-core repulsion = 20423.746306 eV Total energy + Delta-G solvation = -3348.595866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -40.55914 -38.74751 -36.93674 -36.70892 -33.50759 -32.65715 -31.33947 -30.26760 -29.78327 -27.13708 -26.19940 -23.97270 -22.54787 -22.18432 -21.67677 -19.97348 -18.56480 -18.04344 -17.15419 -16.25599 -16.19217 -15.85648 -15.40316 -14.65160 -14.54769 -14.14842 -13.72840 -13.46373 -13.30181 -13.07197 -12.76986 -12.73718 -12.56010 -12.23334 -11.93320 -11.76363 -11.61673 -11.57808 -11.27760 -10.94724 -10.72965 -10.64835 -10.38273 -10.09522 -9.68047 -9.48645 -9.17840 -8.99647 -8.72561 -8.64568 -8.37828 -8.00244 -6.03020 -4.09434 1.04191 1.18781 2.89210 3.27795 3.34439 3.35169 3.38347 3.60892 4.10128 4.40584 4.69057 4.76281 4.86432 5.20088 5.26269 5.27308 5.46765 5.64150 5.68138 5.72061 5.76592 5.83142 5.95453 6.13794 6.14141 6.17083 6.22884 6.26625 6.35762 6.44075 6.46309 6.65835 6.69261 6.88105 7.03841 7.14291 7.28343 7.56562 7.66291 7.90453 7.91721 8.04109 8.39734 8.49984 8.94042 9.55728 11.02466 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.004821 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.636413 B = 5806.580985 C = 6212.659059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.033 4.033 3 C -0.132 4.132 4 C -0.090 4.090 5 C -0.155 4.155 6 C 0.139 3.861 7 O -0.492 6.492 8 C -0.139 4.139 9 C 0.567 3.433 10 O -0.557 6.557 11 N -0.585 5.585 12 C 0.108 3.892 13 C -0.122 4.122 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.110 3.890 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.393 0.607 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 7.075 11.229 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.034 4.034 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.173 4.173 6 C 0.094 3.906 7 O -0.302 6.302 8 C -0.142 4.142 9 C 0.354 3.646 10 O -0.437 6.437 11 N -0.316 5.316 12 C -0.014 4.014 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.012 4.012 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.934 6.875 10.967 15.182 hybrid contribution -0.630 0.112 -0.312 0.712 sum 7.304 6.988 10.655 14.687 Atomic orbital electron populations 1.20933 0.90278 1.04029 1.02854 1.19845 0.96447 0.91184 0.95896 1.20983 0.94211 0.97422 1.02352 1.21088 0.94056 0.97718 0.98000 1.21303 1.00506 0.91520 1.03987 1.18378 0.88008 0.85820 0.98426 1.84756 1.75060 1.36871 1.33540 1.20212 0.93482 0.94254 1.06289 1.18008 0.78750 0.83898 0.83912 1.90739 1.56426 1.65607 1.30952 1.48192 1.54471 1.22885 1.06033 1.21921 0.99693 0.96769 0.83061 1.21948 0.93345 1.00661 1.00116 1.18646 0.95964 0.92612 0.89813 1.21190 0.93452 1.43998 0.96328 0.92700 1.24956 0.95796 0.95321 0.97857 1.69843 1.22244 1.45320 1.15606 0.86623 0.83388 0.78394 0.79768 1.20754 1.21258 1.19961 1.22002 0.95074 1.00985 0.98008 1.21741 0.94156 0.84115 1.01141 0.90574 0.90654 0.90608 0.85252 0.85356 0.85066 0.75065 0.91653 0.91936 0.87717 0.94317 0.95414 0.92970 0.92020 0.92976 0.92000 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.62 36.01 0.35 -1.37 16 2 C -0.03 -0.47 5.76 -104.24 -0.60 -1.07 16 3 C -0.13 -1.52 9.68 -39.63 -0.38 -1.90 16 4 C -0.09 -0.94 10.03 -39.53 -0.40 -1.34 16 5 C -0.15 -1.79 9.98 -39.47 -0.39 -2.18 16 6 C 0.14 1.98 6.72 -38.70 -0.26 1.72 16 7 O -0.49 -6.71 12.95 -18.67 -0.24 -6.96 16 8 C -0.14 -2.23 3.65 -104.85 -0.38 -2.61 16 9 C 0.57 10.60 5.14 -12.47 -0.06 10.53 16 10 O -0.56 -11.66 16.52 5.28 0.09 -11.58 16 11 N -0.59 -11.13 2.98 -174.28 -0.52 -11.65 16 12 C 0.11 2.09 6.31 -3.94 -0.02 2.06 16 13 C -0.12 -2.74 5.14 -26.83 -0.14 -2.88 16 14 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 15 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.52 11.30 55.43 0.63 -23.89 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.12 -2.52 5.30 -26.63 -0.14 -2.66 16 24 C 0.11 2.08 6.43 -3.73 -0.02 2.06 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.08 1.25 7.08 -51.93 -0.37 0.88 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.39 3.71 9.06 45.56 0.41 4.12 16 32 H 0.07 1.20 6.22 -51.93 -0.32 0.88 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.62 6.03 -51.93 -0.31 2.31 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -30.76 334.98 -8.20 -38.97 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.14 Total: 5.27 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.04 Total: -11.00 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.11 Total: -35.53 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.15 Total: -18.53 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.76 -8.20 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599744441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.481 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds