Wall clock time and date at job start Tue Mar 31 2020 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37840 * 120.04233 * 2 1 4 4 C 1.38499 * 120.29645 * 180.25566 * 3 2 1 5 5 C 1.38106 * 120.38949 * 359.44462 * 4 3 2 6 6 C 1.38657 * 120.08640 * 0.27495 * 5 4 3 7 7 O 1.35656 * 120.15367 * 179.97438 * 6 5 4 8 8 C 1.39660 * 120.04787 * 179.70478 * 2 1 3 9 9 C 1.47534 * 120.19329 * 0.02562 * 8 2 1 10 10 O 1.21595 * 120.00034 * 270.02715 * 9 8 2 11 11 N 1.34774 * 120.00187 * 90.01978 * 9 8 2 12 12 C 1.46930 * 120.63084 * 359.72329 * 11 9 8 13 13 C 1.52750 * 109.00915 * 233.58317 * 12 11 9 14 14 C 1.53048 * 109.38550 * 305.58762 * 13 12 11 15 15 C 1.50703 * 109.44908 * 181.25476 * 14 13 12 16 16 H 1.08001 * 119.99417 * 239.93554 * 15 14 13 17 17 C 1.37870 * 120.00248 * 59.94043 * 15 14 13 18 18 N 1.31519 * 119.99774 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00271 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47202 * 89.99663 * 19 17 15 21 21 H 1.48500 * 109.47228 * 210.00117 * 19 17 15 22 22 H 1.48504 * 109.46889 * 329.99790 * 19 17 15 23 23 C 1.53038 * 109.53636 * 61.24145 * 14 13 12 24 24 C 1.46931 * 120.63096 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47485 * 270.29449 * 1 2 3 26 26 H 1.09000 * 109.47145 * 30.30071 * 1 2 3 27 27 H 1.09001 * 109.47100 * 150.29596 * 1 2 3 28 28 H 1.07995 * 119.85287 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.80759 * 179.72616 * 4 3 2 30 30 H 1.07999 * 119.95765 * 180.29943 * 5 4 3 31 31 H 0.96703 * 113.99609 * 89.99975 * 7 6 5 32 32 H 1.08995 * 109.58235 * 353.41772 * 12 11 9 33 33 H 1.08997 * 109.58264 * 113.84171 * 12 11 9 34 34 H 1.08997 * 109.56844 * 185.55290 * 13 12 11 35 35 H 1.09006 * 109.36420 * 65.49522 * 13 12 11 36 36 H 1.08996 * 109.45979 * 301.22171 * 14 13 12 37 37 H 0.97002 * 119.99894 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.49782 * 178.68676 * 23 14 13 39 39 H 1.08993 * 109.52602 * 58.60302 * 23 14 13 40 40 H 1.09004 * 109.58564 * 246.15962 * 24 11 9 41 41 H 1.08997 * 109.58912 * 6.43876 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1932 0.0000 4 6 3.5821 1.1994 -0.0053 5 6 4.2860 0.0112 0.0008 6 6 3.6081 -1.1983 0.0067 7 8 4.2982 -2.3662 0.0122 8 6 2.2063 -1.2089 0.0062 9 6 1.4740 -2.4896 0.0123 10 8 1.1714 -3.0120 1.0678 11 7 1.1403 -3.0806 -1.1521 12 6 1.4936 -2.4586 -2.4356 13 6 0.2331 -2.3272 -3.2883 14 6 -0.4384 -3.6965 -3.4168 15 6 -1.6653 -3.5744 -4.2834 16 1 -2.6356 -3.8307 -3.8846 17 6 -1.5489 -3.1356 -5.5852 18 7 -0.3672 -2.8230 -6.0706 19 14 -3.0695 -2.9849 -6.6596 20 1 -3.6454 -1.6238 -6.5143 21 1 -2.6980 -3.2165 -8.0786 22 1 -4.0741 -3.9948 -6.2398 23 6 -0.8422 -4.2006 -2.0294 24 6 0.4106 -4.3559 -1.1623 25 1 -0.3634 0.0053 1.0276 26 1 -0.3633 0.8873 -0.5185 27 1 -0.3633 -0.8926 -0.5092 28 1 1.6554 2.1275 -0.0004 29 1 4.1147 2.1389 -0.0098 30 1 5.3659 0.0242 0.0015 31 1 4.4984 -2.7006 0.8973 32 1 1.9177 -1.4704 -2.2581 33 1 2.2202 -3.0823 -2.9561 34 1 0.4993 -1.9583 -4.2788 35 1 -0.4544 -1.6282 -2.8119 36 1 0.2582 -4.4013 -3.8707 37 1 -0.2853 -2.5139 -6.9864 38 1 -1.3412 -5.1651 -2.1238 39 1 -1.5197 -3.4845 -1.5646 40 1 1.0471 -5.1378 -1.5767 41 1 0.1227 -4.6203 -0.1448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599744441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:29 Heat of formation + Delta-G solvation = -82.464062 kcal Electronic energy + Delta-G solvation = -23773.166699 eV Core-core repulsion = 20423.746306 eV Total energy + Delta-G solvation = -3349.420392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.80322 -40.02937 -38.36835 -37.91240 -35.34779 -33.76087 -32.98600 -31.88289 -31.01881 -28.30409 -27.85814 -25.43552 -24.15481 -23.68399 -22.72268 -21.51087 -20.07860 -19.07057 -18.71565 -18.09899 -17.33981 -17.25856 -16.50882 -16.38953 -15.78366 -15.58145 -14.98218 -14.94801 -14.59475 -14.51648 -14.46821 -14.18785 -13.89992 -13.65195 -13.37039 -13.14479 -12.82581 -12.81549 -12.73746 -12.56207 -12.47068 -12.17071 -11.99469 -11.76135 -11.49544 -11.03857 -11.00811 -10.80252 -10.41382 -9.79094 -9.63744 -9.58320 -8.07838 -6.21576 0.05685 0.25387 1.41853 1.43606 1.46162 1.52962 2.01732 2.44326 2.57775 3.15765 3.18815 3.41650 3.80748 4.00307 4.04630 4.20345 4.29159 4.31963 4.33422 4.44369 4.51604 4.58764 4.63706 4.64654 4.72539 4.82334 4.86509 4.92573 5.11661 5.15774 5.21842 5.29925 5.37416 5.39040 5.47617 5.49870 5.63375 5.82628 5.95919 6.09462 6.36298 6.39860 6.69064 6.87853 7.02404 7.46440 8.96009 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.004821 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.636413 B = 5806.580985 C = 6212.659059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.049 4.049 3 C -0.129 4.129 4 C -0.077 4.077 5 C -0.152 4.152 6 C 0.127 3.873 7 O -0.507 6.507 8 C -0.174 4.174 9 C 0.571 3.429 10 O -0.586 6.586 11 N -0.590 5.590 12 C 0.125 3.875 13 C -0.109 4.109 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.018 3.982 18 N -0.913 5.913 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.111 4.111 24 C 0.114 3.886 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.159 0.841 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.407 0.593 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 9.059 11.685 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.094 4.094 5 C -0.170 4.170 6 C 0.081 3.919 7 O -0.319 6.319 8 C -0.177 4.177 9 C 0.360 3.640 10 O -0.468 6.468 11 N -0.320 5.320 12 C 0.002 3.998 13 C -0.147 4.147 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.068 0.932 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.776 3.224 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.149 4.149 24 C -0.008 4.008 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.772 8.856 11.439 16.919 hybrid contribution -0.850 -0.480 -0.423 1.064 sum 7.922 8.376 11.017 15.946 Atomic orbital electron populations 1.20908 0.90682 1.03276 1.02995 1.20007 0.96461 0.91726 0.96833 1.21339 0.95015 0.97331 1.01022 1.21584 0.93714 0.98912 0.95225 1.21628 1.01853 0.90745 1.02807 1.18616 0.87461 0.86880 0.98911 1.84707 1.74900 1.37252 1.35090 1.20177 0.94390 0.93259 1.09903 1.18463 0.77984 0.84531 0.82992 1.90702 1.57604 1.66718 1.31730 1.48204 1.54706 1.22908 1.06164 1.21639 0.97863 0.97500 0.82752 1.21682 0.94402 0.99406 0.99226 1.18608 0.94754 0.92872 0.91038 1.21507 0.94074 1.44269 0.97222 0.93208 1.25650 0.98409 0.95029 0.99021 1.69965 1.23815 1.45654 1.15855 0.85678 0.80188 0.78457 0.78045 1.20185 1.20928 1.19644 1.21838 0.95832 1.00894 0.96382 1.21667 0.93551 0.84648 1.00930 0.90095 0.88638 0.93965 0.82386 0.81374 0.82537 0.73376 0.90262 0.92450 0.90255 0.94992 0.98045 0.92919 0.91365 0.93665 0.91210 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 9.62 71.24 0.69 -2.63 16 2 C -0.05 -1.34 5.76 -19.61 -0.11 -1.46 16 3 C -0.13 -2.54 9.68 22.24 0.22 -2.33 16 4 C -0.08 -1.27 10.03 22.30 0.22 -1.04 16 5 C -0.15 -3.01 9.98 22.34 0.22 -2.79 16 6 C 0.13 3.41 6.72 22.84 0.15 3.57 16 7 O -0.51 -13.37 12.95 -89.71 -1.16 -14.53 16 8 C -0.17 -5.47 3.65 -20.01 -0.07 -5.55 16 9 C 0.57 21.55 5.14 86.70 0.45 21.99 16 10 O -0.59 -24.90 16.52 -4.01 -0.07 -24.96 16 11 N -0.59 -22.76 2.98 -823.57 -2.45 -25.21 16 12 C 0.12 4.92 6.31 86.21 0.54 5.47 16 13 C -0.11 -5.00 5.14 30.53 0.16 -4.84 16 14 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 15 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 16 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 17 C 0.02 0.96 5.30 84.65 0.45 1.41 16 18 N -0.91 -51.02 11.30 21.45 0.24 -50.77 16 19 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C -0.11 -4.68 5.30 30.66 0.16 -4.52 16 24 C 0.11 4.37 6.43 86.35 0.56 4.93 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 2.10 8.09 -2.39 -0.02 2.09 16 27 H 0.04 1.41 7.08 -2.39 -0.02 1.40 16 28 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 30 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.41 7.42 9.06 -74.06 -0.67 6.75 16 32 H 0.08 2.92 6.22 -2.39 -0.01 2.90 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 4.09 6.03 -2.39 -0.01 4.07 16 35 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.08 3.13 7.00 -2.39 -0.02 3.11 16 Total: -1.00 -67.26 334.98 2.78 -64.48 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.37 Total: 20.32 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 3.82 Total: -14.16 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.21 Total: -75.99 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.23 Total: -39.50 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.26 2.78 -64.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599744441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.986 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds