Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37829 * 120.04916 * 2 1 4 4 C 1.38501 * 120.29960 * 180.25695 * 3 2 1 5 5 C 1.38106 * 120.38927 * 359.74475 * 4 3 2 6 6 C 1.38668 * 120.08180 * 359.97438 * 5 4 3 7 7 O 1.35658 * 120.14651 * 180.02562 * 6 5 4 8 8 C 1.39667 * 120.04199 * 179.74741 * 2 1 3 9 9 C 1.47539 * 120.19064 * 0.02562 * 8 2 1 10 10 O 1.21593 * 120.00101 * 269.72326 * 9 8 2 11 11 N 1.34775 * 120.00312 * 89.72623 * 9 8 2 12 12 C 1.46931 * 120.62591 * 359.97438 * 11 9 8 13 13 C 1.53186 * 108.77754 * 233.61170 * 12 11 9 14 14 C 1.53039 * 109.31322 * 305.36834 * 13 12 11 15 15 C 1.53045 * 109.53982 * 61.36694 * 14 13 12 16 16 H 1.09000 * 109.49695 * 58.61728 * 15 14 13 17 17 C 1.50701 * 109.49976 * 178.68633 * 15 14 13 18 18 H 1.08002 * 119.99761 * 359.92632 * 17 15 14 19 19 C 1.37871 * 119.99694 * 180.21195 * 17 15 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 15 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 15 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.46934 * 120.60963 * 180.02562 * 11 9 8 26 26 H 1.08999 * 109.47219 * 270.25940 * 1 2 3 27 27 H 1.08999 * 109.46873 * 30.24995 * 1 2 3 28 28 H 1.08995 * 109.47725 * 150.25024 * 1 2 3 29 29 H 1.07995 * 119.85064 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.80407 * 179.72391 * 4 3 2 31 31 H 1.07999 * 119.95901 * 180.02562 * 5 4 3 32 32 H 0.96699 * 113.99878 * 269.98149 * 7 6 5 33 33 H 1.09006 * 109.58242 * 113.82597 * 12 11 9 34 34 H 1.08994 * 109.58802 * 353.40174 * 12 11 9 35 35 H 1.09001 * 109.50125 * 185.41855 * 13 12 11 36 36 H 1.09001 * 109.52498 * 65.33696 * 13 12 11 37 37 H 1.08999 * 109.46233 * 301.34303 * 14 13 12 38 38 H 1.09007 * 109.45233 * 181.37749 * 14 13 12 39 39 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.61141 * 6.61608 * 25 11 9 41 41 H 1.08998 * 109.55491 * 246.19355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1930 0.0000 4 6 3.5822 1.1991 -0.0054 5 6 4.2860 0.0109 -0.0055 6 6 3.6079 -1.1987 0.0004 7 8 4.2980 -2.3666 0.0008 8 6 2.2063 -1.2090 0.0053 9 6 1.4738 -2.4897 0.0104 10 8 1.1759 -3.0156 1.0655 11 7 1.1348 -3.0769 -1.1544 12 6 1.4873 -2.4533 -2.4373 13 6 0.2182 -2.3166 -3.2843 14 6 -0.4536 -3.6855 -3.4142 15 6 -0.8514 -4.1943 -2.0267 16 1 -1.5272 -3.4795 -1.5572 17 6 -1.5417 -5.5274 -2.1586 18 1 -1.6838 -5.9677 -3.1345 19 6 -1.9969 -6.1822 -1.0339 20 7 -1.8238 -5.6461 0.1544 21 14 -2.8594 -7.8310 -1.1981 22 1 -1.9412 -8.8087 -1.8354 23 1 -3.2479 -8.3225 0.1483 24 1 -4.0742 -7.6728 -2.0373 25 6 0.4048 -4.3520 -1.1649 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8921 -0.5099 29 1 1.6556 2.1274 0.0004 30 1 4.1149 2.1386 -0.0098 31 1 5.3659 0.0237 -0.0092 32 1 4.4944 -2.7077 -0.8825 33 1 2.2104 -3.0787 -2.9610 34 1 1.9155 -1.4671 -2.2588 35 1 0.4801 -1.9444 -4.2747 36 1 -0.4675 -1.6191 -2.8031 37 1 0.2411 -4.3888 -3.8735 38 1 -1.3438 -3.5954 -4.0369 39 1 -2.1444 -6.1065 0.9456 40 1 0.1186 -4.6181 -0.1473 41 1 1.0397 -5.1324 -1.5841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600094643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -61.904706 kcal Electronic energy + Delta-G solvation = -23927.779924 eV Core-core repulsion = 20579.251053 eV Total energy + Delta-G solvation = -3348.528872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44591 -38.58690 -36.90411 -36.56292 -33.42409 -32.51360 -31.73754 -30.27025 -29.59888 -27.07401 -25.17572 -24.90276 -22.83716 -21.83357 -21.66503 -19.88268 -18.51526 -18.04962 -16.97431 -16.21185 -16.02527 -15.85837 -15.12128 -14.57807 -14.54795 -13.98093 -13.73412 -13.60355 -13.38837 -13.17108 -12.75068 -12.64100 -12.57405 -12.10401 -11.91061 -11.82735 -11.69316 -11.53755 -11.00983 -10.92234 -10.66110 -10.53111 -10.41456 -10.24315 -9.90680 -9.36772 -9.14708 -8.92300 -8.69088 -8.62612 -8.43459 -7.75864 -5.99718 -4.08987 1.09086 1.20785 3.20109 3.31981 3.38327 3.39255 3.46028 3.74990 4.11764 4.42812 4.77193 4.80421 4.90495 5.21875 5.28674 5.30508 5.32108 5.47048 5.51451 5.64398 5.74187 5.77611 5.79930 5.96216 6.13408 6.22187 6.24564 6.28727 6.31108 6.48007 6.58008 6.65801 6.72671 6.84426 6.95300 7.13950 7.27519 7.61523 7.63939 7.85879 7.98836 8.23381 8.37951 8.84869 8.95519 9.56917 11.05544 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.004799 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.167608 B = 5832.593883 C = 5995.075093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.036 4.036 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.155 4.155 6 C 0.136 3.864 7 O -0.489 6.489 8 C -0.136 4.136 9 C 0.559 3.441 10 O -0.524 6.524 11 N -0.600 5.600 12 C 0.109 3.891 13 C -0.132 4.132 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.523 4.523 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.112 3.888 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.390 0.610 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.265 0.735 40 H 0.123 0.877 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 13.837 -5.035 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.037 4.037 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.174 4.174 6 C 0.091 3.909 7 O -0.300 6.300 8 C -0.140 4.140 9 C 0.345 3.655 10 O -0.400 6.400 11 N -0.332 5.332 12 C -0.015 4.015 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.022 3.978 16 H 0.046 0.954 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.008 4.008 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.996 13.534 -3.656 17.218 hybrid contribution -0.317 -0.951 -0.590 1.164 sum 9.679 12.583 -4.246 16.433 Atomic orbital electron populations 1.20936 0.90251 1.03559 1.03380 1.19871 0.96462 0.91180 0.96150 1.20963 0.94176 0.97356 1.02620 1.21057 0.94048 0.97618 0.98510 1.21297 1.00420 0.91558 1.04099 1.18406 0.88171 0.85784 0.98559 1.84808 1.75045 1.36774 1.33328 1.20425 0.93565 0.94763 1.05222 1.17991 0.79322 0.83738 0.84486 1.90827 1.54250 1.64238 1.30696 1.48514 1.55951 1.24636 1.04112 1.21611 0.97303 0.97257 0.85304 1.21938 0.96912 0.99769 0.98442 1.21634 0.98924 0.93824 1.00455 1.18951 0.92574 0.96679 0.89567 0.95364 1.21028 1.37764 1.04331 0.93015 0.92413 1.25048 0.95704 0.97788 0.95409 1.69870 1.45598 1.38471 0.97787 0.86656 0.80030 0.84133 0.77167 1.20243 1.21251 1.20291 1.22321 0.92026 0.79949 1.06457 0.90320 0.91014 0.90480 0.85397 0.85492 0.85179 0.75348 0.92162 0.91359 0.92238 0.92114 0.93169 0.92979 0.92540 0.85931 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.62 36.01 0.35 -1.44 16 2 C -0.04 -0.52 5.75 -104.24 -0.60 -1.12 16 3 C -0.13 -1.51 9.68 -39.63 -0.38 -1.89 16 4 C -0.09 -0.96 10.03 -39.53 -0.40 -1.36 16 5 C -0.16 -1.80 9.98 -39.47 -0.39 -2.19 16 6 C 0.14 2.01 6.72 -38.70 -0.26 1.75 16 7 O -0.49 -7.17 12.95 -18.68 -0.24 -7.42 16 8 C -0.14 -2.29 3.65 -104.85 -0.38 -2.67 16 9 C 0.56 11.80 5.14 -12.47 -0.06 11.73 16 10 O -0.52 -13.74 16.52 5.28 0.09 -13.65 16 11 N -0.60 -12.02 2.97 -174.01 -0.52 -12.54 16 12 C 0.11 1.69 6.34 -3.71 -0.02 1.67 16 13 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 14 C -0.11 -2.15 5.11 -26.69 -0.14 -2.28 16 15 C 0.04 1.01 2.25 -91.67 -0.21 0.80 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.52 -14.03 8.56 -34.44 -0.29 -14.33 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 20 N -0.88 -25.69 11.40 55.43 0.63 -25.06 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.11 2.72 5.40 -3.72 -0.02 2.70 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.08 1.32 7.08 -51.93 -0.37 0.95 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.39 3.91 9.06 45.56 0.41 4.32 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.93 6.21 -51.93 -0.32 0.61 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.12 3.50 5.13 -51.93 -0.27 3.24 16 41 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -33.24 335.24 -8.24 -41.47 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.16 Total: 5.16 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.07 Total: -9.22 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.11 Total: -37.60 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.15 Total: -21.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.24 -8.24 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600094643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.432 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds