Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.43346 * 2 1 4 4 N 1.46501 * 109.47406 * 298.90628 * 3 2 1 5 5 C 1.34773 * 120.00759 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.47428 * 120.00439 * 179.97438 * 5 4 3 8 8 C 1.39219 * 120.28274 * 354.03619 * 7 5 4 9 9 C 1.38218 * 120.09379 * 180.02562 * 8 7 5 10 10 C 1.38833 * 120.67438 * 359.97438 * 9 8 7 11 11 C 1.37594 * 120.57203 * 359.73779 * 10 9 8 12 12 C 1.40705 * 119.87828 * 0.52161 * 11 10 9 13 13 C 1.40886 * 120.32923 * 179.76941 * 12 11 10 14 14 H 1.08002 * 120.00836 * 143.57432 * 13 12 11 15 15 C 1.40276 * 119.99473 * 323.84267 * 13 12 11 16 16 N 1.30622 * 120.00463 * 349.72502 * 15 13 12 17 17 Si 1.86803 * 119.99709 * 169.72084 * 15 13 12 18 18 H 1.48494 * 109.47139 * 60.00501 * 17 15 13 19 19 H 1.48508 * 109.46797 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47318 * 300.00338 * 17 15 13 21 21 C 1.54803 * 110.59840 * 122.61746 * 2 1 3 22 22 C 1.55002 * 102.09099 * 97.85619 * 21 2 1 23 23 O 1.44377 * 103.48870 * 37.02500 * 22 21 2 24 24 C 1.43744 * 106.97253 * 319.93514 * 23 22 21 25 25 H 1.09003 * 109.46829 * 59.30237 * 1 2 3 26 26 H 1.08993 * 109.46859 * 179.29756 * 1 2 3 27 27 H 1.08997 * 109.47149 * 299.30258 * 1 2 3 28 28 H 1.09001 * 109.46968 * 178.90806 * 3 2 1 29 29 H 1.08999 * 109.47483 * 58.90703 * 3 2 1 30 30 H 0.97002 * 119.99575 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.95634 * 0.03671 * 8 7 5 32 32 H 1.08004 * 119.66672 * 179.97438 * 9 8 7 33 33 H 1.08008 * 119.71356 * 180.02562 * 10 9 8 34 34 H 1.07992 * 120.06086 * 180.28074 * 11 10 9 35 35 H 0.97000 * 120.00339 * 179.97438 * 16 15 13 36 36 H 1.09000 * 110.90991 * 216.05054 * 21 2 1 37 37 H 1.08998 * 110.91288 * 339.65744 * 21 2 1 38 38 H 1.09003 * 110.61647 * 278.52199 * 22 21 2 39 39 H 1.08998 * 110.62002 * 155.52230 * 22 21 2 40 40 H 1.09001 * 109.88468 * 267.09398 * 24 23 22 41 41 H 1.09004 * 110.00059 * 146.01391 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.6091 2.1245 -1.2091 5 6 1.9605 3.4076 -1.4251 6 8 2.6551 3.9922 -0.6159 7 6 1.5029 4.1024 -2.6421 8 6 0.8132 3.4061 -3.6308 9 6 0.3864 4.0613 -4.7705 10 6 0.6374 5.4156 -4.9448 11 6 1.3115 6.1319 -3.9827 12 6 1.7615 5.4874 -2.8157 13 6 2.4569 6.2106 -1.8267 14 1 2.3042 5.9815 -0.7823 15 6 3.3435 7.2322 -2.1981 16 7 3.6789 7.3823 -3.4516 17 14 4.0445 8.3782 -0.9001 18 1 4.8071 7.5872 0.0988 19 1 4.9483 9.3638 -1.5461 20 1 2.9352 9.0951 -0.2215 21 6 2.0747 -0.7811 1.2205 22 6 2.3828 -2.1702 0.6058 23 8 2.8781 -1.8527 -0.7126 24 6 2.0694 -0.7766 -1.2168 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8961 28 1 3.1539 1.4155 0.0196 29 1 1.6938 1.9595 0.8800 30 1 1.0554 1.6581 -1.8547 31 1 0.6111 2.3524 -3.5070 32 1 -0.1477 3.5143 -5.5333 33 1 0.2965 5.9122 -5.8413 34 1 1.4983 7.1860 -4.1248 35 1 4.2917 8.0890 -3.7085 36 1 2.9821 -0.3165 1.6063 37 1 1.3179 -0.8603 2.0010 38 1 1.4756 -2.7709 0.5407 39 1 3.1456 -2.6870 1.1882 40 1 1.2392 -1.1776 -1.7982 41 1 2.6733 -0.1166 -1.8397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601167907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = -70.358875 kcal Electronic energy + Delta-G solvation = -23028.915248 eV Core-core repulsion = 19680.019777 eV Total energy + Delta-G solvation = -3348.895472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15732 -38.72274 -36.82058 -35.16162 -33.72177 -32.49389 -30.09815 -29.79609 -29.37288 -26.91503 -25.90261 -25.07414 -22.93841 -21.90906 -20.84905 -19.59499 -19.28619 -17.54459 -16.72309 -16.22307 -15.65109 -15.34725 -15.16572 -14.99601 -14.46610 -14.24164 -13.87848 -13.40916 -13.23478 -13.03800 -12.94526 -12.68613 -12.64702 -12.14704 -11.83809 -11.61179 -11.54585 -11.10877 -11.06026 -11.02174 -10.81787 -10.72312 -10.68923 -10.52019 -10.09249 -9.77602 -9.67023 -9.23564 -8.45778 -8.35303 -7.59634 -7.34193 -6.78514 -4.37239 2.35989 2.82270 3.10570 3.16312 3.25551 3.80425 3.86668 3.99507 4.16748 4.35893 4.56936 4.67662 4.71691 4.95377 5.03682 5.04967 5.43070 5.52554 5.54073 5.59990 5.61331 5.66511 5.80993 5.86188 5.96747 5.96940 5.99322 6.11964 6.21383 6.28750 6.60792 6.72661 6.93505 7.08142 7.14460 7.23809 7.45042 7.61045 7.86746 7.97766 8.17052 8.37018 8.66558 8.81823 8.90194 9.40723 10.18236 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018677 B = 0.004460 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.835219 B = 6275.822933 C = 7306.489744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.141 3.859 4 N -0.749 5.749 5 C 0.564 3.436 6 O -0.536 6.536 7 C -0.260 4.260 8 C -0.058 4.058 9 C -0.245 4.245 10 C -0.095 4.095 11 C -0.147 4.147 12 C 0.149 3.851 13 C -0.418 4.418 14 H 0.102 0.898 15 C 0.071 3.929 16 N -0.794 5.794 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.144 4.144 22 C 0.047 3.953 23 O -0.377 6.377 24 C 0.052 3.948 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.390 0.610 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.282 0.718 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -12.655 5.360 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C 0.017 3.983 4 N -0.405 5.405 5 C 0.358 3.642 6 O -0.414 6.414 7 C -0.265 4.265 8 C -0.077 4.077 9 C -0.264 4.264 10 C -0.114 4.114 11 C -0.166 4.166 12 C 0.145 3.855 13 C -0.446 4.446 14 H 0.120 0.880 15 C -0.147 4.147 16 N -0.419 5.419 17 Si 0.740 3.260 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.188 1.188 21 C -0.182 4.182 22 C -0.030 4.030 23 O -0.296 6.296 24 C -0.025 4.025 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.075 -12.170 5.697 14.042 hybrid contribution -0.063 0.317 0.116 0.343 sum -4.138 -11.853 5.813 13.836 Atomic orbital electron populations 1.21865 0.92977 1.01739 1.02947 1.22212 0.96934 0.95964 0.95692 1.21137 0.99003 0.89189 0.89019 1.46068 1.56602 1.13934 1.23881 1.18416 0.79345 0.79856 0.86579 1.90691 1.38073 1.65465 1.47184 1.19479 1.15210 0.94688 0.97134 1.20634 0.96489 0.96542 0.93991 1.20281 1.11369 0.95374 0.99370 1.20795 0.98739 0.94222 0.97620 1.21307 1.00196 0.99512 0.95624 1.17459 0.87605 0.88944 0.91536 1.20039 1.17895 1.10530 0.96166 0.88010 1.26079 0.96020 0.96559 0.96059 1.69700 1.26298 1.28119 1.17814 0.86236 0.79300 0.79276 0.81207 1.18646 1.20467 1.18805 1.23200 1.02218 0.95504 0.97244 1.23530 0.99244 0.96218 0.83968 1.88879 1.56426 1.53030 1.31283 1.23384 0.95135 0.88468 0.95530 0.91845 0.92420 0.91837 0.91806 0.91821 0.77468 0.89391 0.89088 0.89068 0.86818 0.90674 0.89908 0.89855 0.92327 0.89069 0.92143 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.10 37.16 0.30 -1.03 16 2 C -0.11 -1.19 0.68 -152.98 -0.10 -1.30 16 3 C 0.14 2.09 4.35 -4.04 -0.02 2.07 16 4 N -0.75 -12.93 4.77 -61.38 -0.29 -13.22 16 5 C 0.56 12.96 7.72 -12.52 -0.10 12.86 16 6 O -0.54 -14.13 13.64 5.27 0.07 -14.06 16 7 C -0.26 -6.32 5.92 -104.37 -0.62 -6.94 16 8 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 9 C -0.24 -5.15 10.03 -39.37 -0.39 -5.54 16 10 C -0.09 -2.13 10.01 -39.60 -0.40 -2.52 16 11 C -0.15 -3.72 8.62 -38.89 -0.34 -4.06 16 12 C 0.15 3.98 5.47 -106.54 -0.58 3.40 16 13 C -0.42 -11.52 7.58 -37.81 -0.29 -11.81 16 14 H 0.10 2.90 6.05 -52.49 -0.32 2.58 16 15 C 0.07 1.84 5.23 -17.30 -0.09 1.75 16 16 N -0.79 -20.78 11.35 55.56 0.63 -20.15 16 17 Si 0.92 19.78 29.57 -169.99 -5.03 14.75 16 18 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.14 -1.35 6.27 -24.72 -0.15 -1.50 16 22 C 0.05 0.44 7.72 38.21 0.29 0.74 16 23 O -0.38 -4.86 11.52 -35.23 -0.41 -5.26 16 24 C 0.05 0.62 6.55 37.73 0.25 0.86 16 25 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.39 5.84 5.17 -40.82 -0.21 5.63 16 31 H 0.09 1.52 6.44 -52.49 -0.34 1.18 16 32 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.11 2.93 6.79 -52.49 -0.36 2.58 16 35 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 36 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 37 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 41 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -30.43 331.44 -8.34 -38.77 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.70 Total: 8.80 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.61 Total: -14.61 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.34 Total: -33.38 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.33 Total: -19.33 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.43 -8.34 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601167907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.594 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds