Wall clock time and date at job start Tue Mar 31 2020 07:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.43346 * 2 1 4 4 N 1.46501 * 109.47406 * 298.90628 * 3 2 1 5 5 C 1.34773 * 120.00759 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.47428 * 120.00439 * 179.97438 * 5 4 3 8 8 C 1.39219 * 120.28274 * 354.03619 * 7 5 4 9 9 C 1.38218 * 120.09379 * 180.02562 * 8 7 5 10 10 C 1.38833 * 120.67438 * 359.97438 * 9 8 7 11 11 C 1.37594 * 120.57203 * 359.73779 * 10 9 8 12 12 C 1.40705 * 119.87828 * 0.52161 * 11 10 9 13 13 C 1.40886 * 120.32923 * 179.76941 * 12 11 10 14 14 H 1.08002 * 120.00836 * 143.57432 * 13 12 11 15 15 C 1.40276 * 119.99473 * 323.84267 * 13 12 11 16 16 N 1.30622 * 120.00463 * 349.72502 * 15 13 12 17 17 Si 1.86803 * 119.99709 * 169.72084 * 15 13 12 18 18 H 1.48494 * 109.47139 * 60.00501 * 17 15 13 19 19 H 1.48508 * 109.46797 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47318 * 300.00338 * 17 15 13 21 21 C 1.54803 * 110.59840 * 122.61746 * 2 1 3 22 22 C 1.55002 * 102.09099 * 97.85619 * 21 2 1 23 23 O 1.44377 * 103.48870 * 37.02500 * 22 21 2 24 24 C 1.43744 * 106.97253 * 319.93514 * 23 22 21 25 25 H 1.09003 * 109.46829 * 59.30237 * 1 2 3 26 26 H 1.08993 * 109.46859 * 179.29756 * 1 2 3 27 27 H 1.08997 * 109.47149 * 299.30258 * 1 2 3 28 28 H 1.09001 * 109.46968 * 178.90806 * 3 2 1 29 29 H 1.08999 * 109.47483 * 58.90703 * 3 2 1 30 30 H 0.97002 * 119.99575 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.95634 * 0.03671 * 8 7 5 32 32 H 1.08004 * 119.66672 * 179.97438 * 9 8 7 33 33 H 1.08008 * 119.71356 * 180.02562 * 10 9 8 34 34 H 1.07992 * 120.06086 * 180.28074 * 11 10 9 35 35 H 0.97000 * 120.00339 * 179.97438 * 16 15 13 36 36 H 1.09000 * 110.90991 * 216.05054 * 21 2 1 37 37 H 1.08998 * 110.91288 * 339.65744 * 21 2 1 38 38 H 1.09003 * 110.61647 * 278.52199 * 22 21 2 39 39 H 1.08998 * 110.62002 * 155.52230 * 22 21 2 40 40 H 1.09001 * 109.88468 * 267.09398 * 24 23 22 41 41 H 1.09004 * 110.00059 * 146.01391 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.6091 2.1245 -1.2091 5 6 1.9605 3.4076 -1.4251 6 8 2.6551 3.9922 -0.6159 7 6 1.5029 4.1024 -2.6421 8 6 0.8132 3.4061 -3.6308 9 6 0.3864 4.0613 -4.7705 10 6 0.6374 5.4156 -4.9448 11 6 1.3115 6.1319 -3.9827 12 6 1.7615 5.4874 -2.8157 13 6 2.4569 6.2106 -1.8267 14 1 2.3042 5.9815 -0.7823 15 6 3.3435 7.2322 -2.1981 16 7 3.6789 7.3823 -3.4516 17 14 4.0445 8.3782 -0.9001 18 1 4.8071 7.5872 0.0988 19 1 4.9483 9.3638 -1.5461 20 1 2.9352 9.0951 -0.2215 21 6 2.0747 -0.7811 1.2205 22 6 2.3828 -2.1702 0.6058 23 8 2.8781 -1.8527 -0.7126 24 6 2.0694 -0.7766 -1.2168 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8961 28 1 3.1539 1.4155 0.0196 29 1 1.6938 1.9595 0.8800 30 1 1.0554 1.6581 -1.8547 31 1 0.6111 2.3524 -3.5070 32 1 -0.1477 3.5143 -5.5333 33 1 0.2965 5.9122 -5.8413 34 1 1.4983 7.1860 -4.1248 35 1 4.2917 8.0890 -3.7085 36 1 2.9821 -0.3165 1.6063 37 1 1.3179 -0.8603 2.0010 38 1 1.4756 -2.7709 0.5407 39 1 3.1456 -2.6870 1.1882 40 1 1.2392 -1.1776 -1.7982 41 1 2.6733 -0.1166 -1.8397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601167907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:31 Heat of formation + Delta-G solvation = -89.535998 kcal Electronic energy + Delta-G solvation = -23029.746831 eV Core-core repulsion = 19680.019777 eV Total energy + Delta-G solvation = -3349.727054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25230 -40.30677 -38.56657 -36.48451 -35.54885 -33.85912 -31.82735 -31.38800 -30.47441 -27.99878 -27.32271 -26.59026 -24.15542 -23.29935 -22.62184 -21.11618 -20.46944 -19.34989 -18.20308 -17.19636 -17.14570 -16.79966 -16.61797 -16.03892 -15.89039 -15.87746 -15.48839 -14.99714 -14.48410 -14.41766 -14.16278 -14.15530 -13.79809 -13.48683 -13.41309 -12.94123 -12.86363 -12.72645 -12.52035 -12.38725 -12.30536 -11.92555 -11.89135 -11.78030 -11.56978 -11.45829 -11.12694 -10.64075 -10.30066 -9.96707 -9.39555 -9.21236 -8.67389 -6.35556 0.51950 1.01885 1.32742 1.44218 1.50247 2.21033 2.35207 2.43332 2.79406 2.99068 3.43444 3.62109 3.71193 3.83081 4.12273 4.19378 4.30071 4.32033 4.37211 4.57382 4.61829 4.67930 4.69325 4.78234 4.84925 4.87275 4.94212 4.99067 5.07985 5.09768 5.14346 5.23926 5.31377 5.34230 5.60834 5.63916 5.81855 5.91877 6.04459 6.10319 6.34315 6.63123 6.79875 6.91382 7.00626 7.65674 8.31462 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018677 B = 0.004460 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.835219 B = 6275.822933 C = 7306.489744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C 0.141 3.859 4 N -0.725 5.725 5 C 0.559 3.441 6 O -0.580 6.580 7 C -0.279 4.279 8 C -0.054 4.054 9 C -0.234 4.234 10 C -0.091 4.091 11 C -0.176 4.176 12 C 0.117 3.883 13 C -0.460 4.460 14 H 0.078 0.922 15 C 0.033 3.967 16 N -0.826 5.826 17 Si 0.977 3.023 18 H -0.275 1.275 19 H -0.260 1.260 20 H -0.256 1.256 21 C -0.141 4.141 22 C 0.045 3.955 23 O -0.404 6.404 24 C 0.051 3.949 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.405 0.595 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.289 0.711 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -15.076 4.950 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C 0.017 3.983 4 N -0.380 5.380 5 C 0.352 3.648 6 O -0.461 6.461 7 C -0.284 4.284 8 C -0.073 4.073 9 C -0.252 4.252 10 C -0.110 4.110 11 C -0.196 4.196 12 C 0.114 3.886 13 C -0.489 4.489 14 H 0.096 0.904 15 C -0.182 4.182 16 N -0.452 5.452 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.184 1.184 20 H -0.180 1.180 21 C -0.179 4.179 22 C -0.031 4.031 23 O -0.323 6.323 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.834 -14.638 5.267 16.615 hybrid contribution 0.371 0.850 0.172 0.943 sum -5.464 -13.788 5.438 15.797 Atomic orbital electron populations 1.21872 0.91210 1.03306 1.02906 1.22145 0.98131 0.92983 0.96593 1.21255 0.97980 0.91543 0.87514 1.45783 1.55386 1.12098 1.24737 1.18463 0.79013 0.81371 0.85988 1.90667 1.40066 1.66941 1.48439 1.19868 1.15476 0.94463 0.98577 1.21060 0.94816 0.98546 0.92878 1.20816 1.09738 0.94838 0.99849 1.21188 0.97034 0.95141 0.97616 1.21251 1.02408 0.99184 0.96716 1.17843 0.88106 0.90400 0.92273 1.20000 1.20450 1.13060 0.95367 0.90371 1.26748 0.95872 0.97497 0.98056 1.69727 1.27374 1.29094 1.19028 0.85342 0.78819 0.77534 0.78495 1.19985 1.18359 1.18028 1.23224 1.02442 0.95201 0.97039 1.23753 1.00606 0.96245 0.82524 1.88853 1.57331 1.53141 1.32987 1.23382 0.95233 0.88329 0.95635 0.92223 0.90018 0.91622 0.93842 0.92460 0.75765 0.85034 0.84784 0.86144 0.88588 0.90074 0.90960 0.87486 0.90198 0.87788 0.90114 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.10 71.98 0.58 -1.58 16 2 C -0.10 -1.97 0.68 -51.19 -0.03 -2.01 16 3 C 0.14 4.16 4.35 86.38 0.38 4.53 16 4 N -0.73 -24.63 4.77 -466.36 -2.22 -26.85 16 5 C 0.56 26.24 7.72 86.66 0.67 26.91 16 6 O -0.58 -32.20 13.64 -4.07 -0.06 -32.25 16 7 C -0.28 -13.66 5.92 -19.70 -0.12 -13.78 16 8 C -0.05 -2.15 9.52 22.50 0.21 -1.94 16 9 C -0.23 -8.99 10.03 22.41 0.22 -8.76 16 10 C -0.09 -3.94 10.01 22.26 0.22 -3.71 16 11 C -0.18 -9.13 8.62 22.72 0.20 -8.93 16 12 C 0.12 6.53 5.47 -21.11 -0.12 6.42 16 13 C -0.46 -26.88 7.58 23.41 0.18 -26.70 16 14 H 0.08 4.80 6.05 -2.91 -0.02 4.78 16 15 C 0.03 1.78 5.23 85.37 0.45 2.23 16 16 N -0.83 -45.07 11.35 21.88 0.25 -44.83 16 17 Si 0.98 42.44 29.57 68.60 2.03 44.46 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 C -0.14 -2.32 6.27 31.89 0.20 -2.12 16 22 C 0.04 0.71 7.72 72.67 0.56 1.27 16 23 O -0.40 -9.62 11.52 -148.98 -1.72 -11.33 16 24 C 0.05 1.11 6.55 72.35 0.47 1.58 16 25 H 0.06 1.00 6.99 -2.39 -0.02 0.98 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.40 11.22 5.17 -92.71 -0.48 10.74 16 31 H 0.13 3.97 6.44 -2.91 -0.02 3.95 16 32 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.10 5.20 6.79 -2.91 -0.02 5.18 16 35 H 0.29 14.28 8.29 -92.71 -0.77 13.51 16 36 H 0.07 1.35 7.86 -2.39 -0.02 1.33 16 37 H 0.11 1.28 7.87 -2.39 -0.02 1.26 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.43 7.69 -2.39 -0.02 1.41 16 41 H 0.07 1.78 7.40 -2.38 -0.02 1.76 16 Total: -1.00 -70.70 331.44 2.92 -67.78 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.56 Total: 29.62 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.08 Total: -26.60 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.98 Total: -71.68 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.77 Total: -43.59 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.70 2.92 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601167907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.760 kcal (2) G-P(sol) polarization free energy of solvation -70.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds