Wall clock time and date at job start Tue Mar 31 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.45561 * 2 1 4 4 N 1.46503 * 109.46707 * 59.30444 * 3 2 1 5 5 C 1.34781 * 119.99857 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.47437 * 119.99998 * 179.97438 * 5 4 3 8 8 C 1.39224 * 120.28063 * 354.91885 * 7 5 4 9 9 C 1.38217 * 120.09280 * 180.02562 * 8 7 5 10 10 C 1.38831 * 120.67363 * 359.97438 * 9 8 7 11 11 C 1.37599 * 120.57242 * 0.02562 * 10 9 8 12 12 C 1.40712 * 119.88069 * 0.02562 * 11 10 9 13 13 C 1.40889 * 120.33001 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00162 * 141.32055 * 13 12 11 15 15 C 1.40277 * 119.99651 * 321.32751 * 13 12 11 16 16 N 1.30630 * 119.99752 * 174.54402 * 15 13 12 17 17 Si 1.86795 * 120.00233 * 354.53875 * 15 13 12 18 18 H 1.48502 * 109.46999 * 89.19443 * 17 15 13 19 19 H 1.48501 * 109.47127 * 209.19038 * 17 15 13 20 20 H 1.48495 * 109.47243 * 329.19612 * 17 15 13 21 21 C 1.54510 * 110.51299 * 237.40032 * 2 1 3 22 22 C 1.54476 * 104.06390 * 241.21817 * 21 2 1 23 23 O 1.44425 * 104.80282 * 23.97227 * 22 21 2 24 24 C 1.44636 * 105.37126 * 319.56820 * 23 22 21 25 25 H 1.08998 * 109.47359 * 60.69936 * 1 2 3 26 26 H 1.09002 * 109.46976 * 180.69581 * 1 2 3 27 27 H 1.08998 * 109.46960 * 300.69427 * 1 2 3 28 28 H 1.08996 * 109.47364 * 299.29975 * 3 2 1 29 29 H 1.08997 * 109.46990 * 179.29770 * 3 2 1 30 30 H 0.97000 * 120.00347 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.95202 * 359.97438 * 8 7 5 32 32 H 1.07995 * 119.66795 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.71603 * 179.72453 * 10 9 8 34 34 H 1.07998 * 120.06489 * 179.97438 * 11 10 9 35 35 H 0.96995 * 120.00211 * 179.97438 * 16 15 13 36 36 H 1.09006 * 110.51058 * 359.86163 * 21 2 1 37 37 H 1.09002 * 110.51477 * 122.42848 * 21 2 1 38 38 H 1.09002 * 110.37527 * 142.80986 * 22 21 2 39 39 H 1.08999 * 110.37096 * 265.03310 * 22 21 2 40 40 H 1.09004 * 110.34419 * 281.59321 * 24 23 22 41 41 H 1.09005 * 110.50779 * 159.17967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5747 2.1374 1.1878 5 6 1.9196 3.4231 1.3993 6 8 2.6378 3.9986 0.6045 7 6 1.4260 4.1316 2.5943 8 6 0.5199 3.5142 3.4523 9 6 0.0593 4.1823 4.5712 10 6 0.4913 5.4709 4.8546 11 6 1.3863 6.1072 4.0254 12 6 1.8697 5.4495 2.8792 13 6 2.7860 6.0923 2.0235 14 1 3.5939 5.5310 1.5779 15 6 2.6488 7.4614 1.7504 16 7 3.5568 8.0806 1.0443 17 14 1.1679 8.3989 2.3962 18 1 1.4721 8.9350 3.7472 19 1 0.8539 9.5222 1.4771 20 1 0.0004 7.4848 2.4777 21 6 2.0714 -0.7797 -1.2191 22 6 2.8787 -1.9393 -0.5948 23 8 2.3120 -2.1165 0.7218 24 6 2.0714 -0.7797 1.2188 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5246 0.8837 28 1 1.7205 1.9497 -0.8961 29 1 3.1544 1.4148 0.0126 30 1 1.0015 1.6785 1.8215 31 1 0.1758 2.5121 3.2428 32 1 -0.6432 3.6967 5.2323 33 1 0.1179 5.9802 5.7307 34 1 1.7165 7.1098 4.2534 35 1 3.4618 9.0272 0.8551 36 1 1.2491 -1.1672 -1.8206 37 1 2.7180 -0.1431 -1.8232 38 1 2.7575 -2.8473 -1.1855 39 1 3.9330 -1.6722 -0.5230 40 1 3.0012 -0.3337 1.5720 41 1 1.3302 -0.7970 2.0178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601167908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:35 Heat of formation + Delta-G solvation = -66.519707 kcal Electronic energy + Delta-G solvation = -23090.480875 eV Core-core repulsion = 19741.751882 eV Total energy + Delta-G solvation = -3348.728993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14547 -38.86794 -37.05544 -35.19654 -33.67991 -32.50654 -30.48567 -30.22307 -29.69140 -26.92540 -25.92279 -24.99051 -22.93696 -22.20014 -20.99974 -19.67117 -19.32632 -17.62914 -16.92730 -16.34332 -15.77474 -15.37416 -15.34233 -14.88043 -14.49802 -14.19185 -14.09852 -13.76111 -13.51826 -13.17482 -12.92495 -12.65460 -12.56071 -12.34407 -12.06535 -11.75891 -11.56281 -11.47873 -11.11120 -10.96701 -10.84205 -10.76886 -10.71091 -10.47418 -10.09871 -9.84851 -9.80274 -9.28056 -8.54980 -8.42850 -7.84557 -7.60458 -6.88286 -4.47710 2.07772 2.57431 3.08328 3.17216 3.27838 3.75385 3.86105 3.95169 3.99723 4.40175 4.53613 4.60038 4.68169 4.93128 5.04919 5.08363 5.35460 5.44789 5.50447 5.56371 5.63328 5.67851 5.73007 5.77310 5.82198 5.89758 5.93989 5.99024 6.09289 6.15301 6.36871 6.47661 6.62801 6.77116 7.04664 7.09726 7.20978 7.35856 7.55214 7.72238 7.98459 8.28337 8.47175 8.60999 8.82253 9.32027 10.10022 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.004347 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.490271 B = 6439.173561 C = 7189.048065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.140 3.860 4 N -0.748 5.748 5 C 0.560 3.440 6 O -0.524 6.524 7 C -0.246 4.246 8 C -0.043 4.043 9 C -0.251 4.251 10 C -0.066 4.066 11 C -0.225 4.225 12 C 0.118 3.882 13 C -0.397 4.397 14 H 0.115 0.885 15 C 0.078 3.922 16 N -0.798 5.798 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.290 1.290 20 H -0.243 1.243 21 C -0.144 4.144 22 C 0.045 3.955 23 O -0.377 6.377 24 C 0.053 3.947 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.390 0.610 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.286 0.714 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 -13.681 -1.352 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C 0.016 3.984 4 N -0.404 5.404 5 C 0.353 3.647 6 O -0.401 6.401 7 C -0.251 4.251 8 C -0.062 4.062 9 C -0.271 4.271 10 C -0.084 4.084 11 C -0.244 4.244 12 C 0.113 3.887 13 C -0.424 4.424 14 H 0.132 0.868 15 C -0.141 4.141 16 N -0.422 5.422 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.217 1.217 20 H -0.166 1.166 21 C -0.182 4.182 22 C -0.032 4.032 23 O -0.296 6.296 24 C -0.024 4.024 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.551 -13.233 -2.006 14.137 hybrid contribution -0.844 0.540 0.430 1.091 sum -5.396 -12.692 -1.576 13.881 Atomic orbital electron populations 1.21838 0.92960 1.01941 1.02585 1.22203 0.97285 0.95438 0.95795 1.21183 0.98609 0.89160 0.89495 1.46039 1.55037 1.13384 1.25946 1.18363 0.80108 0.80134 0.86133 1.90775 1.36695 1.65622 1.46999 1.19463 1.07879 0.99153 0.98624 1.20771 0.94887 0.96756 0.93804 1.20300 1.08556 0.96912 1.01314 1.20748 0.95480 0.94715 0.97501 1.21199 1.05012 1.00856 0.97371 1.17563 0.89460 0.90613 0.91032 1.19945 1.09224 0.92819 1.20423 0.86781 1.26300 0.97149 0.97441 0.93218 1.69543 1.32245 1.11591 1.28779 0.86391 0.83147 0.78798 0.78190 1.19427 1.21709 1.16647 1.23007 1.00635 0.97143 0.97434 1.23398 0.97014 0.98635 0.84155 1.89127 1.83137 1.26282 1.31027 1.23623 1.00589 0.82267 0.95929 0.92033 0.92091 0.92149 0.91677 0.91864 0.77480 0.88788 0.88479 0.88519 0.87670 0.90306 0.90238 0.89918 0.89235 0.92188 0.91562 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.11 37.16 0.30 -1.06 16 2 C -0.11 -1.16 0.75 -152.94 -0.11 -1.27 16 3 C 0.14 2.00 4.31 -4.04 -0.02 1.98 16 4 N -0.75 -12.38 5.03 -61.38 -0.31 -12.69 16 5 C 0.56 12.48 7.72 -12.51 -0.10 12.39 16 6 O -0.52 -13.83 13.67 5.27 0.07 -13.76 16 7 C -0.25 -5.69 5.92 -104.37 -0.62 -6.31 16 8 C -0.04 -0.84 9.52 -39.22 -0.37 -1.22 16 9 C -0.25 -4.84 10.03 -39.37 -0.39 -5.24 16 10 C -0.07 -1.35 10.01 -39.60 -0.40 -1.75 16 11 C -0.23 -5.28 6.94 -38.88 -0.27 -5.55 16 12 C 0.12 3.02 5.04 -106.54 -0.54 2.48 16 13 C -0.40 -11.12 8.08 -37.81 -0.31 -11.42 16 14 H 0.11 3.53 6.36 -52.49 -0.33 3.20 16 15 C 0.08 2.11 5.51 -17.30 -0.10 2.01 16 16 N -0.80 -21.84 13.92 55.56 0.77 -21.07 16 17 Si 0.91 20.82 24.48 -169.99 -4.16 16.66 16 18 H -0.27 -5.83 6.70 56.52 0.38 -5.45 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.24 -5.70 6.68 56.52 0.38 -5.32 16 21 C -0.14 -1.34 6.38 -25.16 -0.16 -1.50 16 22 C 0.04 0.42 7.64 37.93 0.29 0.71 16 23 O -0.38 -4.55 11.65 -35.23 -0.41 -4.96 16 24 C 0.05 0.59 6.27 37.93 0.24 0.83 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 30 H 0.39 5.49 5.11 -40.82 -0.21 5.28 16 31 H 0.09 1.47 6.43 -52.48 -0.34 1.14 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.11 2.43 4.89 -52.49 -0.26 2.17 16 35 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 36 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 37 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -30.74 325.57 -7.36 -38.10 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.68 Total: 7.74 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.55 Total: -14.92 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.46 Total: -33.76 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.34 Total: -18.73 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.16 Total: 16.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.74 -7.36 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601167908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.424 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds