Wall clock time and date at job start Tue Mar 31 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.45561 * 2 1 4 4 N 1.46503 * 109.46707 * 59.30444 * 3 2 1 5 5 C 1.34781 * 119.99857 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.47437 * 119.99998 * 179.97438 * 5 4 3 8 8 C 1.39224 * 120.28063 * 354.91885 * 7 5 4 9 9 C 1.38217 * 120.09280 * 180.02562 * 8 7 5 10 10 C 1.38831 * 120.67363 * 359.97438 * 9 8 7 11 11 C 1.37599 * 120.57242 * 0.02562 * 10 9 8 12 12 C 1.40712 * 119.88069 * 0.02562 * 11 10 9 13 13 C 1.40889 * 120.33001 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00162 * 141.32055 * 13 12 11 15 15 C 1.40277 * 119.99651 * 321.32751 * 13 12 11 16 16 N 1.30630 * 119.99752 * 174.54402 * 15 13 12 17 17 Si 1.86795 * 120.00233 * 354.53875 * 15 13 12 18 18 H 1.48502 * 109.46999 * 89.19443 * 17 15 13 19 19 H 1.48501 * 109.47127 * 209.19038 * 17 15 13 20 20 H 1.48495 * 109.47243 * 329.19612 * 17 15 13 21 21 C 1.54510 * 110.51299 * 237.40032 * 2 1 3 22 22 C 1.54476 * 104.06390 * 241.21817 * 21 2 1 23 23 O 1.44425 * 104.80282 * 23.97227 * 22 21 2 24 24 C 1.44636 * 105.37126 * 319.56820 * 23 22 21 25 25 H 1.08998 * 109.47359 * 60.69936 * 1 2 3 26 26 H 1.09002 * 109.46976 * 180.69581 * 1 2 3 27 27 H 1.08998 * 109.46960 * 300.69427 * 1 2 3 28 28 H 1.08996 * 109.47364 * 299.29975 * 3 2 1 29 29 H 1.08997 * 109.46990 * 179.29770 * 3 2 1 30 30 H 0.97000 * 120.00347 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.95202 * 359.97438 * 8 7 5 32 32 H 1.07995 * 119.66795 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.71603 * 179.72453 * 10 9 8 34 34 H 1.07998 * 120.06489 * 179.97438 * 11 10 9 35 35 H 0.96995 * 120.00211 * 179.97438 * 16 15 13 36 36 H 1.09006 * 110.51058 * 359.86163 * 21 2 1 37 37 H 1.09002 * 110.51477 * 122.42848 * 21 2 1 38 38 H 1.09002 * 110.37527 * 142.80986 * 22 21 2 39 39 H 1.08999 * 110.37096 * 265.03310 * 22 21 2 40 40 H 1.09004 * 110.34419 * 281.59321 * 24 23 22 41 41 H 1.09005 * 110.50779 * 159.17967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5747 2.1374 1.1878 5 6 1.9196 3.4231 1.3993 6 8 2.6378 3.9986 0.6045 7 6 1.4260 4.1316 2.5943 8 6 0.5199 3.5142 3.4523 9 6 0.0593 4.1823 4.5712 10 6 0.4913 5.4709 4.8546 11 6 1.3863 6.1072 4.0254 12 6 1.8697 5.4495 2.8792 13 6 2.7860 6.0923 2.0235 14 1 3.5939 5.5310 1.5779 15 6 2.6488 7.4614 1.7504 16 7 3.5568 8.0806 1.0443 17 14 1.1679 8.3989 2.3962 18 1 1.4721 8.9350 3.7472 19 1 0.8539 9.5222 1.4771 20 1 0.0004 7.4848 2.4777 21 6 2.0714 -0.7797 -1.2191 22 6 2.8787 -1.9393 -0.5948 23 8 2.3120 -2.1165 0.7218 24 6 2.0714 -0.7797 1.2188 25 1 -0.3634 0.5029 -0.8962 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5246 0.8837 28 1 1.7205 1.9497 -0.8961 29 1 3.1544 1.4148 0.0126 30 1 1.0015 1.6785 1.8215 31 1 0.1758 2.5121 3.2428 32 1 -0.6432 3.6967 5.2323 33 1 0.1179 5.9802 5.7307 34 1 1.7165 7.1098 4.2534 35 1 3.4618 9.0272 0.8551 36 1 1.2491 -1.1672 -1.8206 37 1 2.7180 -0.1431 -1.8232 38 1 2.7575 -2.8473 -1.1855 39 1 3.9330 -1.6722 -0.5230 40 1 3.0012 -0.3337 1.5720 41 1 1.3302 -0.7970 2.0178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601167908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:34 Heat of formation + Delta-G solvation = -88.005761 kcal Electronic energy + Delta-G solvation = -23091.412581 eV Core-core repulsion = 19741.751882 eV Total energy + Delta-G solvation = -3349.660698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26874 -40.38644 -38.73783 -36.50946 -35.50121 -33.87529 -32.29464 -31.74205 -30.61914 -28.00477 -27.30617 -26.50563 -24.16778 -23.51418 -22.69770 -21.19587 -20.44822 -19.44481 -18.47342 -17.36055 -17.17573 -16.82554 -16.41316 -16.29928 -15.83539 -15.74478 -15.63100 -15.28444 -14.81849 -14.55373 -14.23370 -14.12561 -13.92763 -13.75875 -13.32155 -13.26731 -12.78091 -12.68338 -12.55105 -12.35949 -12.20010 -12.04683 -11.87851 -11.74254 -11.66830 -11.58662 -11.09047 -10.71308 -10.37938 -10.00950 -9.52082 -9.40170 -8.79810 -6.47389 0.33799 0.83215 1.23819 1.36812 1.45989 2.10624 2.25887 2.38720 2.72379 2.97184 3.48575 3.52079 3.67553 3.76365 4.07552 4.18657 4.21695 4.24911 4.29481 4.43733 4.56209 4.66428 4.67905 4.73182 4.76197 4.82673 4.85110 4.88595 4.98558 5.00966 5.06660 5.14307 5.30501 5.31431 5.45408 5.59503 5.67733 5.80018 5.85853 5.94981 6.25898 6.45672 6.65604 6.78390 6.88708 7.62309 8.26030 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.004347 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.490271 B = 6439.173561 C = 7189.048065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C 0.140 3.860 4 N -0.723 5.723 5 C 0.553 3.447 6 O -0.576 6.576 7 C -0.263 4.263 8 C -0.041 4.041 9 C -0.225 4.225 10 C -0.062 4.062 11 C -0.246 4.246 12 C 0.100 3.900 13 C -0.444 4.444 14 H 0.060 0.940 15 C 0.033 3.967 16 N -0.857 5.857 17 Si 0.969 3.031 18 H -0.247 1.247 19 H -0.282 1.282 20 H -0.249 1.249 21 C -0.142 4.142 22 C 0.041 3.959 23 O -0.391 6.391 24 C 0.052 3.948 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.407 0.593 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.292 0.708 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -16.143 0.927 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C 0.016 3.984 4 N -0.378 5.378 5 C 0.345 3.655 6 O -0.457 6.457 7 C -0.267 4.267 8 C -0.060 4.060 9 C -0.244 4.244 10 C -0.081 4.081 11 C -0.265 4.265 12 C 0.097 3.903 13 C -0.474 4.474 14 H 0.078 0.922 15 C -0.179 4.179 16 N -0.484 5.484 17 Si 0.792 3.208 18 H -0.172 1.172 19 H -0.209 1.209 20 H -0.172 1.172 21 C -0.180 4.180 22 C -0.036 4.036 23 O -0.310 6.310 24 C -0.025 4.025 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.244 0.756 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.300 -15.756 0.300 17.811 hybrid contribution 0.199 0.951 -0.149 0.983 sum -8.101 -14.806 0.151 16.878 Atomic orbital electron populations 1.21841 0.91630 1.02946 1.02714 1.22125 0.98167 0.92709 0.96777 1.21285 0.97893 0.91183 0.87995 1.45754 1.53889 1.11545 1.26620 1.18549 0.79603 0.81609 0.85713 1.90774 1.38986 1.67350 1.48590 1.19865 1.08534 0.98725 0.99617 1.21233 0.93118 0.98682 0.92936 1.20977 1.06857 0.95987 1.00586 1.21271 0.93756 0.95301 0.97725 1.21301 1.06477 1.01293 0.97420 1.17820 0.89268 0.92004 0.91255 1.19697 1.10569 0.93662 1.23450 0.92157 1.27052 0.99722 0.97861 0.93288 1.69611 1.34601 1.12219 1.31982 0.85478 0.79232 0.77428 0.78669 1.17180 1.20939 1.17238 1.23031 1.01203 0.96871 0.96890 1.23567 0.96893 0.99652 0.83460 1.89114 1.83336 1.26421 1.32153 1.23634 1.00390 0.82163 0.96299 0.92038 0.90614 0.91936 0.92750 0.93389 0.75551 0.84190 0.83591 0.84482 0.87950 0.89811 0.88514 0.89997 0.87105 0.92292 0.92941 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.11 71.98 0.58 -1.68 16 2 C -0.10 -1.93 0.75 -51.16 -0.04 -1.97 16 3 C 0.14 4.01 4.31 86.38 0.37 4.38 16 4 N -0.72 -23.33 5.03 -466.35 -2.35 -25.67 16 5 C 0.55 25.27 7.72 86.67 0.67 25.94 16 6 O -0.58 -32.72 13.67 -4.06 -0.06 -32.77 16 7 C -0.26 -11.99 5.92 -19.70 -0.12 -12.10 16 8 C -0.04 -1.42 9.52 22.50 0.21 -1.21 16 9 C -0.23 -7.24 10.03 22.41 0.22 -7.02 16 10 C -0.06 -2.25 10.01 22.26 0.22 -2.03 16 11 C -0.25 -11.16 6.94 22.72 0.16 -11.01 16 12 C 0.10 5.24 5.04 -21.11 -0.11 5.14 16 13 C -0.44 -26.86 8.08 23.42 0.19 -26.67 16 14 H 0.06 4.17 6.36 -2.91 -0.02 4.15 16 15 C 0.03 1.91 5.51 85.37 0.47 2.38 16 16 N -0.86 -50.82 13.92 21.88 0.30 -50.52 16 17 Si 0.97 44.13 24.48 68.60 1.68 45.81 16 18 H -0.25 -10.22 6.70 99.48 0.67 -9.55 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.25 -11.31 6.68 99.48 0.66 -10.65 16 21 C -0.14 -2.37 6.38 31.61 0.20 -2.17 16 22 C 0.04 0.69 7.64 72.48 0.55 1.24 16 23 O -0.39 -8.56 11.65 -148.98 -1.74 -10.30 16 24 C 0.05 1.06 6.27 72.49 0.45 1.52 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.02 6.88 -2.39 -0.02 1.00 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.53 8.12 -2.39 -0.02 1.51 16 30 H 0.41 10.22 5.11 -92.71 -0.47 9.75 16 31 H 0.14 3.51 6.43 -2.91 -0.02 3.49 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.10 4.64 4.89 -2.91 -0.01 4.63 16 35 H 0.29 15.48 8.29 -92.71 -0.77 14.71 16 36 H 0.10 1.32 7.73 -2.38 -0.02 1.30 16 37 H 0.08 1.39 7.73 -2.39 -0.02 1.38 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 1.21 7.85 -2.39 -0.02 1.19 16 41 H 0.11 1.85 7.87 -2.38 -0.02 1.83 16 Total: -1.00 -74.46 325.57 2.39 -72.07 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.49 Total: 26.66 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.05 Total: -25.27 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -2.04 Total: -76.19 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.79 Total: -43.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.68 Total: 45.81 kcal Total: -74.46 2.39 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601167908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.937 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds