Wall clock time and date at job start Tue Mar 31 2020 07:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.82384 * 2 1 4 4 N 1.46494 * 109.47380 * 305.88966 * 3 2 1 5 5 C 1.34773 * 120.00493 * 180.02562 * 4 3 2 6 6 O 1.21609 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.47427 * 120.00442 * 179.97438 * 5 4 3 8 8 C 1.39227 * 120.28371 * 356.32893 * 7 5 4 9 9 C 1.38219 * 120.09350 * 179.72193 * 8 7 5 10 10 C 1.38821 * 120.67728 * 0.56185 * 9 8 7 11 11 C 1.37601 * 120.56903 * 359.71374 * 10 9 8 12 12 C 1.40704 * 119.88240 * 0.02562 * 11 10 9 13 13 C 1.40885 * 120.32871 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00382 * 215.15846 * 13 12 11 15 15 C 1.40277 * 120.00060 * 35.15474 * 13 12 11 16 16 N 1.30623 * 120.00086 * 9.44366 * 15 13 12 17 17 Si 1.86798 * 120.00004 * 189.43784 * 15 13 12 18 18 H 1.48498 * 109.47280 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47216 * 119.99890 * 17 15 13 20 20 H 1.48495 * 109.47486 * 240.00450 * 17 15 13 21 21 C 1.54380 * 109.83096 * 120.88869 * 2 1 3 22 22 C 1.55306 * 102.25562 * 98.24873 * 21 2 1 23 23 C 1.54953 * 100.93893 * 34.13127 * 22 21 2 24 24 O 1.43240 * 109.90931 * 239.06773 * 2 1 3 25 25 H 1.09000 * 109.47215 * 59.30183 * 1 2 3 26 26 H 1.09007 * 109.46745 * 179.29491 * 1 2 3 27 27 H 1.08998 * 109.47398 * 299.29464 * 1 2 3 28 28 H 1.09002 * 109.47270 * 65.88770 * 3 2 1 29 29 H 1.09001 * 109.47647 * 185.88264 * 3 2 1 30 30 H 0.97002 * 119.99806 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.95192 * 359.97438 * 8 7 5 32 32 H 1.08007 * 119.66015 * 180.29407 * 9 8 7 33 33 H 1.08004 * 119.71925 * 179.74213 * 10 9 8 34 34 H 1.07998 * 120.05685 * 180.02562 * 11 10 9 35 35 H 0.96998 * 120.00228 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.85050 * 216.43787 * 21 2 1 37 37 H 1.08994 * 110.84875 * 340.05702 * 21 2 1 38 38 H 1.08999 * 111.12791 * 152.05194 * 22 21 2 39 39 H 1.08997 * 111.12354 * 276.17331 * 22 21 2 40 40 H 1.08997 * 110.30506 * 82.47628 * 23 22 21 41 41 H 1.09001 * 110.30423 * 204.63845 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 7 1.4528 2.1733 -1.1189 5 6 1.7667 3.4686 -1.3188 6 8 2.5444 4.0283 -0.5700 7 6 1.1673 4.2072 -2.4452 8 6 0.3361 3.5531 -3.3506 9 6 -0.2284 4.2506 -4.4019 10 6 0.0328 5.6029 -4.5762 11 6 0.8547 6.2753 -3.7012 12 6 1.4376 5.5898 -2.6195 13 6 2.2801 6.2691 -1.7176 14 1 3.1285 5.7608 -1.2836 15 6 2.0172 7.6058 -1.3831 16 7 0.8973 8.1645 -1.7572 17 14 3.2684 8.5868 -0.4027 18 1 4.4448 7.7310 -0.1045 19 1 3.7027 9.7661 -1.1937 20 1 2.6529 9.0434 0.8693 21 6 2.0537 -0.7455 1.2463 22 6 2.3704 -2.1558 0.6780 23 6 2.8436 -1.7966 -0.7531 24 8 2.0178 -0.6923 -1.1552 25 1 -0.3634 0.5246 -0.8837 26 1 -0.3633 -1.0277 -0.0126 27 1 -0.3634 0.5028 0.8962 28 1 1.7771 1.9235 0.9380 29 1 3.1337 1.4345 -0.1053 30 1 0.8327 1.7268 -1.7165 31 1 0.1288 2.5001 -3.2289 32 1 -0.8760 3.7374 -5.0974 33 1 -0.4132 6.1318 -5.4055 34 1 1.0520 7.3274 -3.8444 35 1 0.7156 9.0889 -1.5263 36 1 2.9562 -0.2710 1.6315 37 1 1.2846 -0.8015 2.0165 38 1 3.1661 -2.6384 1.2453 39 1 1.4763 -2.7787 0.6520 40 1 3.8924 -1.5001 -0.7415 41 1 2.6964 -2.6431 -1.4238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601302190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:37 Heat of formation + Delta-G solvation = -87.617801 kcal Electronic energy + Delta-G solvation = -23035.900096 eV Core-core repulsion = 19686.256221 eV Total energy + Delta-G solvation = -3349.643875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19106 -40.30590 -38.53600 -36.00710 -35.40895 -33.42123 -32.41517 -31.73834 -31.11488 -28.02369 -27.27920 -26.32652 -23.90850 -22.84424 -22.50475 -21.18888 -20.92675 -19.39537 -18.20387 -17.36218 -17.13710 -16.78477 -16.67678 -16.02268 -15.91143 -15.65949 -15.19766 -14.97577 -14.50883 -14.47353 -14.16322 -13.72243 -13.61356 -13.52686 -13.34776 -13.01427 -12.86118 -12.79116 -12.62064 -12.46398 -12.32421 -11.97941 -11.91501 -11.81773 -11.61286 -11.47095 -11.13707 -10.53532 -10.22732 -9.95077 -9.39479 -9.21974 -8.67585 -6.36846 0.51480 1.00540 1.33197 1.47275 1.49571 2.21958 2.35374 2.43903 2.79290 2.87387 3.49949 3.70586 3.72791 3.84908 4.07746 4.15328 4.30185 4.37073 4.38407 4.56202 4.60120 4.66873 4.70723 4.83146 4.85724 4.92468 4.93878 4.99215 5.07186 5.09522 5.19637 5.24631 5.32327 5.34217 5.61565 5.65937 5.82438 6.05192 6.10768 6.14213 6.35053 6.65580 6.80350 6.92161 7.02028 7.66801 8.30827 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.004468 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.429917 B = 6265.422884 C = 7336.544152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 C 0.121 3.879 4 N -0.722 5.722 5 C 0.557 3.443 6 O -0.582 6.582 7 C -0.281 4.281 8 C -0.055 4.055 9 C -0.234 4.234 10 C -0.091 4.091 11 C -0.175 4.175 12 C 0.116 3.884 13 C -0.463 4.463 14 H 0.085 0.915 15 C 0.032 3.968 16 N -0.823 5.823 17 Si 0.979 3.021 18 H -0.271 1.271 19 H -0.254 1.254 20 H -0.265 1.265 21 C -0.143 4.143 22 C -0.143 4.143 23 C 0.038 3.962 24 O -0.393 6.393 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.404 0.596 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.289 0.711 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -17.481 3.971 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 C -0.003 4.003 4 N -0.376 5.376 5 C 0.350 3.650 6 O -0.464 6.464 7 C -0.286 4.286 8 C -0.074 4.074 9 C -0.253 4.253 10 C -0.110 4.110 11 C -0.195 4.195 12 C 0.112 3.888 13 C -0.492 4.492 14 H 0.102 0.898 15 C -0.183 4.183 16 N -0.450 5.450 17 Si 0.801 3.199 18 H -0.195 1.195 19 H -0.178 1.178 20 H -0.190 1.190 21 C -0.181 4.181 22 C -0.180 4.180 23 C -0.038 4.038 24 O -0.313 6.313 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.242 0.758 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.694 -16.834 4.321 17.393 hybrid contribution 0.352 0.678 0.258 0.806 sum -0.343 -16.156 4.580 16.796 Atomic orbital electron populations 1.22059 0.92524 1.03483 1.02743 1.22356 0.95328 0.89539 0.86957 1.21669 0.97248 0.91647 0.89713 1.45754 1.49218 1.10399 1.32270 1.18482 0.80521 0.81513 0.84454 1.90617 1.37827 1.68672 1.49316 1.19875 1.10901 0.96399 1.01414 1.21040 0.94245 0.98455 0.93659 1.20796 1.07865 0.94564 1.02113 1.21183 0.96665 0.95071 0.98078 1.21286 1.03046 0.99374 0.95767 1.17867 0.89211 0.90730 0.90950 1.20266 1.11162 0.95934 1.21859 0.89759 1.26813 0.97132 0.98072 0.96249 1.69744 1.22691 1.14523 1.38001 0.85202 0.78523 0.77843 0.78363 1.19508 1.17788 1.18992 1.23171 1.02812 0.95539 0.96534 1.23233 1.03335 0.96426 0.95013 1.23604 0.94338 0.88976 0.96872 1.88459 1.67479 1.44703 1.30692 0.92899 0.90019 0.90532 0.91644 0.93583 0.75813 0.85641 0.84900 0.86007 0.88226 0.90012 0.90356 0.87776 0.88015 0.89073 0.92691 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.50 71.98 0.61 -2.46 16 2 C 0.10 2.27 0.94 -10.33 -0.01 2.26 16 3 C 0.12 3.92 4.73 86.38 0.41 4.32 16 4 N -0.72 -27.48 5.17 -466.39 -2.41 -29.89 16 5 C 0.56 27.69 7.73 86.66 0.67 28.36 16 6 O -0.58 -33.24 13.52 -4.06 -0.05 -33.30 16 7 C -0.28 -14.47 5.92 -19.70 -0.12 -14.58 16 8 C -0.06 -2.36 9.52 22.50 0.21 -2.15 16 9 C -0.23 -9.55 10.03 22.40 0.22 -9.32 16 10 C -0.09 -4.08 10.01 22.26 0.22 -3.86 16 11 C -0.18 -9.31 8.62 22.72 0.20 -9.11 16 12 C 0.12 6.64 5.49 -21.11 -0.12 6.53 16 13 C -0.46 -27.60 7.77 23.41 0.18 -27.42 16 14 H 0.08 5.33 5.74 -2.91 -0.02 5.31 16 15 C 0.03 1.75 5.24 85.37 0.45 2.20 16 16 N -0.82 -44.89 11.23 21.88 0.25 -44.64 16 17 Si 0.98 42.64 29.57 68.60 2.03 44.67 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 C -0.14 -2.34 6.09 31.86 0.19 -2.14 16 22 C -0.14 -1.80 7.16 32.05 0.23 -1.57 16 23 C 0.04 0.68 7.78 72.65 0.56 1.24 16 24 O -0.39 -9.98 10.65 -148.98 -1.59 -11.57 16 25 H 0.05 1.21 6.54 -2.39 -0.02 1.19 16 26 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.40 13.56 4.99 -92.71 -0.46 13.10 16 31 H 0.13 4.35 6.41 -2.91 -0.02 4.33 16 32 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.48 6.68 -2.91 -0.02 5.47 16 35 H 0.29 14.15 8.29 -92.71 -0.77 13.39 16 36 H 0.08 1.34 7.85 -2.39 -0.02 1.32 16 37 H 0.10 1.33 7.82 -2.39 -0.02 1.32 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.40 332.57 2.72 -68.67 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.58 Total: 33.77 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.92 Total: -27.71 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.17 Total: -74.54 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.64 Total: -44.87 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.40 2.72 -68.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601302190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.945 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds