Wall clock time and date at job start Tue Mar 31 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.87363 * 2 1 4 4 N 1.46499 * 109.46822 * 58.99366 * 3 2 1 5 5 C 1.34777 * 119.99562 * 180.02562 * 4 3 2 6 6 O 1.21610 * 120.00448 * 0.02562 * 5 4 3 7 7 C 1.47435 * 119.99708 * 180.02562 * 5 4 3 8 8 C 1.39223 * 120.28352 * 355.35075 * 7 5 4 9 9 C 1.38225 * 120.09266 * 179.97438 * 8 7 5 10 10 C 1.38821 * 120.67652 * 0.02562 * 9 8 7 11 11 C 1.37596 * 120.56871 * 359.97438 * 10 9 8 12 12 C 1.40703 * 119.88421 * 359.74419 * 11 10 9 13 13 C 1.40890 * 120.33012 * 180.25159 * 12 11 10 14 14 H 1.08006 * 120.00265 * 215.81412 * 13 12 11 15 15 C 1.40278 * 120.00037 * 35.81835 * 13 12 11 16 16 N 1.30620 * 119.99809 * 8.98082 * 15 13 12 17 17 Si 1.86802 * 120.00036 * 188.98332 * 15 13 12 18 18 H 1.48507 * 109.46943 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46907 * 119.99918 * 17 15 13 20 20 H 1.48493 * 109.47162 * 239.99943 * 17 15 13 21 21 C 1.54100 * 109.87878 * 238.99351 * 2 1 3 22 22 C 1.54814 * 104.30646 * 242.54169 * 21 2 1 23 23 C 1.55348 * 101.93141 * 20.92088 * 22 21 2 24 24 O 1.43740 * 109.87723 * 121.16343 * 2 1 3 25 25 H 1.08997 * 109.47153 * 181.00326 * 1 2 3 26 26 H 1.09001 * 109.46874 * 301.01297 * 1 2 3 27 27 H 1.09006 * 109.46683 * 61.00215 * 1 2 3 28 28 H 1.08993 * 109.47015 * 178.99496 * 3 2 1 29 29 H 1.09000 * 109.46839 * 298.99516 * 3 2 1 30 30 H 0.97001 * 120.00021 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.95437 * 359.95517 * 8 7 5 32 32 H 1.08005 * 119.65900 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.71633 * 179.97438 * 10 9 8 34 34 H 1.08004 * 120.06148 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00250 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.48617 * 1.28135 * 21 2 1 37 37 H 1.08991 * 110.49133 * 123.79897 * 21 2 1 38 38 H 1.09003 * 110.90603 * 139.14051 * 22 21 2 39 39 H 1.08997 * 110.91062 * 262.75159 * 22 21 2 40 40 H 1.09004 * 110.58697 * 204.46001 * 23 22 21 41 41 H 1.09002 * 110.77963 * 81.52812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 7 1.5470 2.1400 1.1839 5 6 1.8777 3.4294 1.3947 6 8 2.5934 4.0111 0.6020 7 6 1.3718 4.1348 2.5864 8 6 0.4754 3.5063 3.4464 9 6 0.0041 4.1711 4.5629 10 6 0.4147 5.4677 4.8410 11 6 1.2997 6.1150 4.0097 12 6 1.7991 5.4584 2.8699 13 6 2.7098 6.1104 2.0151 14 1 2.6668 5.9404 0.9494 15 6 3.6725 6.9803 2.5482 16 7 3.8421 7.0533 3.8413 17 14 4.7120 8.0344 1.4089 18 1 4.3281 7.7667 -0.0005 19 1 4.4874 9.4690 1.7198 20 1 6.1470 7.7048 1.6017 21 6 2.0540 -0.7465 -1.2421 22 6 2.8346 -1.9516 -0.6632 23 6 2.2280 -2.0725 0.7619 24 8 2.0187 -0.6995 1.1567 25 1 -0.3633 -1.0275 0.0180 26 1 -0.3633 0.5295 0.8808 27 1 -0.3633 0.4982 -0.8989 28 1 3.1399 1.4313 0.0180 29 1 1.7052 1.9499 -0.8989 30 1 0.9752 1.6763 1.8156 31 1 0.1477 2.4980 3.2409 32 1 -0.6915 3.6770 5.2251 33 1 0.0362 5.9728 5.7174 34 1 1.6140 7.1236 4.2341 35 1 4.5080 7.6546 4.2100 36 1 1.2237 -1.0906 -1.8589 37 1 2.7178 -0.1047 -1.8212 38 1 2.6460 -2.8533 -1.2458 39 1 3.9022 -1.7370 -0.6155 40 1 2.9294 -2.5633 1.4367 41 1 1.2816 -2.6126 0.7347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601302191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:41 Heat of formation + Delta-G solvation = -68.462644 kcal Electronic energy + Delta-G solvation = -23042.051425 eV Core-core repulsion = 19693.238180 eV Total energy + Delta-G solvation = -3348.813245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06961 -38.64278 -36.69801 -34.38270 -33.57306 -32.37528 -31.20272 -29.87183 -29.38546 -27.01678 -25.72801 -24.85080 -22.23203 -21.70740 -20.81318 -20.11032 -19.23230 -17.55955 -16.67169 -16.27124 -15.52177 -15.28687 -15.19458 -14.77196 -14.16073 -14.05254 -13.88016 -13.68884 -13.17896 -12.90749 -12.66222 -12.59947 -12.25653 -12.09967 -11.88672 -11.71896 -11.51139 -11.23622 -11.09882 -11.03040 -10.88644 -10.81655 -10.57649 -10.44646 -10.03843 -9.72913 -9.59676 -9.22495 -8.31201 -8.25029 -7.52777 -7.27418 -6.74153 -4.33383 2.42092 2.85212 3.14244 3.24141 3.26408 3.65565 4.03149 4.10780 4.24770 4.38007 4.64962 4.65170 4.75492 4.91320 4.99332 5.12568 5.38581 5.46496 5.56067 5.61299 5.66383 5.74246 5.75864 5.86065 5.96613 6.03079 6.05679 6.13947 6.27672 6.35429 6.67798 6.86920 7.00686 7.15257 7.23262 7.32028 7.51953 7.68094 7.93987 8.05589 8.24050 8.48238 8.74518 8.89474 8.97191 9.50441 10.22205 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.004547 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.727223 B = 6156.636120 C = 7225.197696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 C 0.137 3.863 4 N -0.741 5.741 5 C 0.564 3.436 6 O -0.542 6.542 7 C -0.259 4.259 8 C -0.057 4.057 9 C -0.245 4.245 10 C -0.096 4.096 11 C -0.148 4.148 12 C 0.147 3.853 13 C -0.423 4.423 14 H 0.111 0.889 15 C 0.069 3.931 16 N -0.795 5.795 17 Si 0.915 3.085 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.144 4.144 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.360 6.360 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.395 0.605 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.280 0.720 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -13.989 -6.511 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 C 0.013 3.987 4 N -0.397 5.397 5 C 0.359 3.641 6 O -0.422 6.422 7 C -0.263 4.263 8 C -0.076 4.076 9 C -0.264 4.264 10 C -0.115 4.115 11 C -0.167 4.167 12 C 0.143 3.857 13 C -0.451 4.451 14 H 0.128 0.872 15 C -0.149 4.149 16 N -0.421 5.421 17 Si 0.740 3.260 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.182 4.182 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.279 6.279 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.230 0.770 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.185 -13.348 -6.720 15.279 hybrid contribution 0.241 -0.039 -0.089 0.260 sum -2.944 -13.387 -6.809 15.305 Atomic orbital electron populations 1.22244 0.94487 1.02097 1.03186 1.22406 0.94046 0.92777 0.85774 1.21267 0.99256 0.88390 0.89834 1.45921 1.54759 1.12864 1.26142 1.18405 0.79654 0.80056 0.86031 1.90641 1.37953 1.66210 1.47348 1.19484 1.10607 0.96313 0.99942 1.20661 0.95919 0.96669 0.94305 1.20282 1.08311 0.97057 1.00746 1.20791 0.97887 0.94839 0.97962 1.21329 0.98115 1.00078 0.97155 1.17492 0.89020 0.88413 0.90746 1.20339 1.10060 1.17380 0.97357 0.87157 1.26138 0.97908 0.95514 0.95347 1.69725 1.28877 1.30788 1.12688 0.86128 0.79239 0.78942 0.81700 1.18018 1.19930 1.20002 1.22962 1.00621 0.97159 0.97487 1.23180 1.00928 0.98397 0.96700 1.23591 0.99573 0.84751 0.95273 1.88996 1.85945 1.20198 1.32762 0.92351 0.91467 0.91289 0.91635 0.91105 0.76979 0.89277 0.89123 0.89116 0.86692 0.90872 0.90294 0.89953 0.90356 0.90368 0.89123 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.44 37.16 0.31 -1.46 16 2 C 0.09 1.11 0.82 -90.04 -0.07 1.03 16 3 C 0.14 2.20 4.62 -4.04 -0.02 2.18 16 4 N -0.74 -14.06 5.13 -61.38 -0.31 -14.38 16 5 C 0.56 13.59 7.72 -12.52 -0.10 13.49 16 6 O -0.54 -14.64 13.53 5.27 0.07 -14.57 16 7 C -0.26 -6.53 5.92 -104.37 -0.62 -7.15 16 8 C -0.06 -1.26 9.52 -39.22 -0.37 -1.63 16 9 C -0.24 -5.35 10.03 -39.37 -0.39 -5.75 16 10 C -0.10 -2.21 10.01 -39.60 -0.40 -2.61 16 11 C -0.15 -3.83 8.62 -38.89 -0.34 -4.17 16 12 C 0.15 4.06 5.48 -106.54 -0.58 3.47 16 13 C -0.42 -11.91 7.78 -37.81 -0.29 -12.20 16 14 H 0.11 3.22 5.73 -52.48 -0.30 2.92 16 15 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 16 N -0.80 -21.11 11.25 55.56 0.63 -20.48 16 17 Si 0.92 20.07 29.57 -169.99 -5.03 15.04 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.14 -1.37 6.26 -25.20 -0.16 -1.53 16 22 C -0.15 -1.31 7.18 -24.53 -0.18 -1.49 16 23 C 0.04 0.44 7.67 38.40 0.29 0.73 16 24 O -0.36 -4.94 10.72 -35.23 -0.38 -5.32 16 25 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.07 0.81 6.81 -51.93 -0.35 0.45 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.39 6.85 5.27 -40.82 -0.21 6.64 16 31 H 0.09 1.67 6.42 -52.49 -0.34 1.34 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 3.04 6.72 -52.48 -0.35 2.68 16 35 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 36 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 37 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -31.16 332.69 -8.73 -39.89 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.72 Total: 10.17 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.00 Total: -15.37 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.31 Total: -34.86 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.31 Total: -19.88 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.16 -8.73 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601302191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.572 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds