Wall clock time and date at job start Tue Mar 31 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.87363 * 2 1 4 4 N 1.46499 * 109.46822 * 58.99366 * 3 2 1 5 5 C 1.34777 * 119.99562 * 180.02562 * 4 3 2 6 6 O 1.21610 * 120.00448 * 0.02562 * 5 4 3 7 7 C 1.47435 * 119.99708 * 180.02562 * 5 4 3 8 8 C 1.39223 * 120.28352 * 355.35075 * 7 5 4 9 9 C 1.38225 * 120.09266 * 179.97438 * 8 7 5 10 10 C 1.38821 * 120.67652 * 0.02562 * 9 8 7 11 11 C 1.37596 * 120.56871 * 359.97438 * 10 9 8 12 12 C 1.40703 * 119.88421 * 359.74419 * 11 10 9 13 13 C 1.40890 * 120.33012 * 180.25159 * 12 11 10 14 14 H 1.08006 * 120.00265 * 215.81412 * 13 12 11 15 15 C 1.40278 * 120.00037 * 35.81835 * 13 12 11 16 16 N 1.30620 * 119.99809 * 8.98082 * 15 13 12 17 17 Si 1.86802 * 120.00036 * 188.98332 * 15 13 12 18 18 H 1.48507 * 109.46943 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46907 * 119.99918 * 17 15 13 20 20 H 1.48493 * 109.47162 * 239.99943 * 17 15 13 21 21 C 1.54100 * 109.87878 * 238.99351 * 2 1 3 22 22 C 1.54814 * 104.30646 * 242.54169 * 21 2 1 23 23 C 1.55348 * 101.93141 * 20.92088 * 22 21 2 24 24 O 1.43740 * 109.87723 * 121.16343 * 2 1 3 25 25 H 1.08997 * 109.47153 * 181.00326 * 1 2 3 26 26 H 1.09001 * 109.46874 * 301.01297 * 1 2 3 27 27 H 1.09006 * 109.46683 * 61.00215 * 1 2 3 28 28 H 1.08993 * 109.47015 * 178.99496 * 3 2 1 29 29 H 1.09000 * 109.46839 * 298.99516 * 3 2 1 30 30 H 0.97001 * 120.00021 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.95437 * 359.95517 * 8 7 5 32 32 H 1.08005 * 119.65900 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.71633 * 179.97438 * 10 9 8 34 34 H 1.08004 * 120.06148 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00250 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.48617 * 1.28135 * 21 2 1 37 37 H 1.08991 * 110.49133 * 123.79897 * 21 2 1 38 38 H 1.09003 * 110.90603 * 139.14051 * 22 21 2 39 39 H 1.08997 * 110.91062 * 262.75159 * 22 21 2 40 40 H 1.09004 * 110.58697 * 204.46001 * 23 22 21 41 41 H 1.09002 * 110.77963 * 81.52812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 7 1.5470 2.1400 1.1839 5 6 1.8777 3.4294 1.3947 6 8 2.5934 4.0111 0.6020 7 6 1.3718 4.1348 2.5864 8 6 0.4754 3.5063 3.4464 9 6 0.0041 4.1711 4.5629 10 6 0.4147 5.4677 4.8410 11 6 1.2997 6.1150 4.0097 12 6 1.7991 5.4584 2.8699 13 6 2.7098 6.1104 2.0151 14 1 2.6668 5.9404 0.9494 15 6 3.6725 6.9803 2.5482 16 7 3.8421 7.0533 3.8413 17 14 4.7120 8.0344 1.4089 18 1 4.3281 7.7667 -0.0005 19 1 4.4874 9.4690 1.7198 20 1 6.1470 7.7048 1.6017 21 6 2.0540 -0.7465 -1.2421 22 6 2.8346 -1.9516 -0.6632 23 6 2.2280 -2.0725 0.7619 24 8 2.0187 -0.6995 1.1567 25 1 -0.3633 -1.0275 0.0180 26 1 -0.3633 0.5295 0.8808 27 1 -0.3633 0.4982 -0.8989 28 1 3.1399 1.4313 0.0180 29 1 1.7052 1.9499 -0.8989 30 1 0.9752 1.6763 1.8156 31 1 0.1477 2.4980 3.2409 32 1 -0.6915 3.6770 5.2251 33 1 0.0362 5.9728 5.7174 34 1 1.6140 7.1236 4.2341 35 1 4.5080 7.6546 4.2100 36 1 1.2237 -1.0906 -1.8589 37 1 2.7178 -0.1047 -1.8212 38 1 2.6460 -2.8533 -1.2458 39 1 3.9022 -1.7370 -0.6155 40 1 2.9294 -2.5633 1.4367 41 1 1.2816 -2.6126 0.7347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601302191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:40 Heat of formation + Delta-G solvation = -88.108131 kcal Electronic energy + Delta-G solvation = -23042.903317 eV Core-core repulsion = 19693.238180 eV Total energy + Delta-G solvation = -3349.665137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17549 -40.30465 -38.53561 -35.98383 -35.39298 -33.36788 -32.38873 -31.73155 -31.09841 -28.09901 -27.33344 -26.26474 -23.85404 -22.78489 -22.51560 -21.24519 -20.88757 -19.41692 -18.23014 -17.36257 -17.09055 -16.68741 -16.44330 -16.28336 -15.91230 -15.42737 -15.29439 -14.98015 -14.75510 -14.49621 -14.08699 -13.87560 -13.69058 -13.37342 -13.32884 -12.87384 -12.86054 -12.70981 -12.58850 -12.44683 -12.32499 -12.00235 -11.91803 -11.85543 -11.56696 -11.46292 -11.13991 -10.62621 -10.22823 -9.94881 -9.39365 -9.21036 -8.67266 -6.36854 0.51637 1.00712 1.33097 1.47238 1.49768 2.21996 2.33548 2.46744 2.79847 2.90847 3.53712 3.71396 3.75794 3.84002 4.08333 4.15107 4.31923 4.36867 4.40241 4.55898 4.58260 4.66491 4.70686 4.82629 4.85901 4.92391 4.95946 4.97083 5.08734 5.10252 5.22117 5.24661 5.29895 5.34270 5.61682 5.64936 5.82301 6.02971 6.06203 6.11688 6.35284 6.65840 6.80724 6.92451 7.02124 7.66817 8.31396 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.004547 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.727223 B = 6156.636120 C = 7225.197696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.094 3.906 3 C 0.132 3.868 4 N -0.722 5.722 5 C 0.558 3.442 6 O -0.582 6.582 7 C -0.280 4.280 8 C -0.055 4.055 9 C -0.234 4.234 10 C -0.091 4.091 11 C -0.175 4.175 12 C 0.116 3.884 13 C -0.464 4.464 14 H 0.086 0.914 15 C 0.031 3.969 16 N -0.825 5.825 17 Si 0.980 3.020 18 H -0.269 1.269 19 H -0.253 1.253 20 H -0.267 1.267 21 C -0.143 4.143 22 C -0.149 4.149 23 C 0.038 3.962 24 O -0.392 6.392 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.405 0.595 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.289 0.711 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -16.301 -6.395 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 C 0.008 3.992 4 N -0.376 5.376 5 C 0.351 3.649 6 O -0.464 6.464 7 C -0.285 4.285 8 C -0.074 4.074 9 C -0.253 4.253 10 C -0.110 4.110 11 C -0.195 4.195 12 C 0.113 3.887 13 C -0.494 4.494 14 H 0.104 0.896 15 C -0.184 4.184 16 N -0.452 5.452 17 Si 0.801 3.199 18 H -0.193 1.193 19 H -0.177 1.177 20 H -0.192 1.192 21 C -0.181 4.181 22 C -0.187 4.187 23 C -0.038 4.038 24 O -0.312 6.312 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.596 -15.708 -6.584 17.641 hybrid contribution 0.546 0.494 -0.052 0.738 sum -4.050 -15.214 -6.636 17.085 Atomic orbital electron populations 1.22237 0.93069 1.03478 1.02979 1.22385 0.94954 0.90275 0.86969 1.21480 0.98145 0.91046 0.88489 1.45723 1.53688 1.11235 1.26962 1.18473 0.79392 0.81497 0.85556 1.90616 1.39718 1.67502 1.48548 1.19873 1.11343 0.96216 1.01057 1.21042 0.94564 0.98190 0.93585 1.20801 1.07569 0.96352 1.00587 1.21182 0.96292 0.95498 0.98025 1.21283 1.00062 0.99943 0.98175 1.17870 0.89532 0.89655 0.91667 1.20288 1.12357 1.20227 0.96481 0.89583 1.26829 0.98498 0.96181 0.96858 1.69745 1.29914 1.31759 1.13749 0.85198 0.77674 0.78198 0.78831 1.19344 1.17727 1.19199 1.22993 1.01519 0.97166 0.96385 1.23181 1.00181 0.99029 0.96263 1.23839 1.00878 0.83048 0.96057 1.88950 1.86274 1.22317 1.33704 0.90105 0.92784 0.90444 0.93744 0.90982 0.75822 0.85564 0.84875 0.86016 0.88293 0.90064 0.87845 0.90458 0.87567 0.91225 0.88546 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.44 71.98 0.61 -2.48 16 2 C 0.09 2.16 0.82 -10.42 -0.01 2.15 16 3 C 0.13 4.26 4.62 86.38 0.40 4.66 16 4 N -0.72 -27.42 5.13 -466.36 -2.39 -29.81 16 5 C 0.56 27.66 7.72 86.67 0.67 28.33 16 6 O -0.58 -33.13 13.53 -4.06 -0.05 -33.19 16 7 C -0.28 -14.39 5.92 -19.70 -0.12 -14.51 16 8 C -0.06 -2.34 9.52 22.50 0.21 -2.13 16 9 C -0.23 -9.51 10.03 22.41 0.22 -9.29 16 10 C -0.09 -4.08 10.01 22.26 0.22 -3.86 16 11 C -0.18 -9.31 8.62 22.72 0.20 -9.12 16 12 C 0.12 6.66 5.48 -21.11 -0.12 6.55 16 13 C -0.46 -27.71 7.78 23.42 0.18 -27.53 16 14 H 0.09 5.42 5.73 -2.91 -0.02 5.40 16 15 C 0.03 1.69 5.25 85.37 0.45 2.14 16 16 N -0.83 -45.39 11.25 21.88 0.25 -45.15 16 17 Si 0.98 42.87 29.57 68.60 2.03 44.90 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 C -0.14 -2.38 6.26 31.59 0.20 -2.18 16 22 C -0.15 -2.14 7.18 32.02 0.23 -1.91 16 23 C 0.04 0.64 7.67 72.79 0.56 1.20 16 24 O -0.39 -10.13 10.72 -148.98 -1.60 -11.73 16 25 H 0.08 1.20 8.11 -2.39 -0.02 1.18 16 26 H 0.05 1.17 6.81 -2.39 -0.02 1.16 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.40 13.57 5.27 -92.71 -0.49 13.08 16 31 H 0.13 4.33 6.42 -2.91 -0.02 4.31 16 32 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.10 5.46 6.72 -2.91 -0.02 5.44 16 35 H 0.29 14.28 8.29 -92.71 -0.77 13.51 16 36 H 0.10 1.24 7.70 -2.39 -0.02 1.22 16 37 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 Total: -1.00 -71.77 332.69 2.69 -69.08 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.55 Total: 33.86 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.91 Total: -27.96 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.15 Total: -74.96 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.65 Total: -44.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.77 2.69 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601302191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.025 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds