Wall clock time and date at job start Tue Mar 31 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.45843 * 2 1 4 4 C 1.53032 * 109.46326 * 119.97139 * 2 1 3 5 5 C 1.53194 * 109.34237 * 181.35690 * 4 2 1 6 6 N 1.46936 * 108.77051 * 305.41281 * 5 4 2 7 7 C 1.34770 * 120.60483 * 233.57959 * 6 5 4 8 8 O 1.21608 * 119.99721 * 174.57656 * 7 6 5 9 9 C 1.47429 * 120.00072 * 354.57418 * 7 6 5 10 10 C 1.39224 * 120.28619 * 310.67179 * 9 7 6 11 11 C 1.38211 * 120.09599 * 179.97438 * 10 9 7 12 12 C 1.38826 * 120.67858 * 0.02598 * 11 10 9 13 13 C 1.37596 * 120.56606 * 359.97438 * 12 11 10 14 14 C 1.40703 * 119.88490 * 359.74606 * 13 12 11 15 15 C 1.40890 * 120.33070 * 180.25116 * 14 13 12 16 16 H 1.08006 * 119.99874 * 151.71764 * 15 14 13 17 17 C 1.40272 * 119.99989 * 331.71863 * 15 14 13 18 18 N 1.30623 * 120.00286 * 349.12817 * 17 15 14 19 19 Si 1.86799 * 120.00012 * 169.13208 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47529 * 119.99769 * 19 17 15 22 22 H 1.48503 * 109.47285 * 239.99949 * 19 17 15 23 23 C 1.46924 * 118.76384 * 53.55353 * 6 5 4 24 24 C 1.53042 * 109.44849 * 240.03654 * 2 1 3 25 25 H 1.09002 * 109.47132 * 300.02650 * 1 2 3 26 26 H 1.09000 * 109.47559 * 60.02574 * 1 2 3 27 27 H 1.08999 * 109.47392 * 180.02562 * 1 2 3 28 28 H 0.96709 * 114.00162 * 299.96969 * 3 2 1 29 29 H 1.09006 * 109.50007 * 301.32133 * 4 2 1 30 30 H 1.09000 * 109.49712 * 61.38646 * 4 2 1 31 31 H 1.09000 * 109.58777 * 65.16859 * 5 4 2 32 32 H 1.09001 * 109.58346 * 185.59416 * 5 4 2 33 33 H 1.08005 * 119.94621 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.66472 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.71837 * 179.97438 * 12 11 10 36 36 H 1.08009 * 120.05877 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00641 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58886 * 186.62518 * 23 6 5 39 39 H 1.09000 * 109.58504 * 66.20022 * 23 6 5 40 40 H 1.09006 * 109.49213 * 298.56770 * 24 2 1 41 41 H 1.08992 * 109.49851 * 58.63516 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0060 1.3474 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5714 -0.6896 1.2643 6 7 4.0677 -1.2493 -0.0004 7 6 4.9613 -2.2581 -0.0005 8 8 5.2901 -2.7789 -1.0491 9 6 5.5402 -2.7302 1.2705 10 6 6.0732 -1.8207 2.1800 11 6 6.6145 -2.2676 3.3706 12 6 6.6351 -3.6219 3.6752 13 6 6.1159 -4.5447 2.7964 14 6 5.5537 -4.1155 1.5801 15 6 5.0147 -5.0518 0.6758 16 1 4.2156 -4.7612 0.0099 17 6 5.5158 -6.3615 0.6405 18 7 6.6125 -6.6588 1.2847 19 14 4.6148 -7.6805 -0.3279 20 1 3.4082 -7.0914 -0.9624 21 1 5.5124 -8.2230 -1.3792 22 1 4.2069 -8.7757 0.5883 23 6 3.5711 -0.6889 -1.2646 24 6 2.0395 -0.7208 -1.2502 25 1 -0.3633 0.5143 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 -0.3634 -1.0276 0.0005 28 1 1.7209 1.8653 -0.7653 29 1 1.6575 -0.2207 2.1398 30 1 1.6972 -1.7555 1.2385 31 1 3.9150 0.3396 1.3677 32 1 3.9412 -1.2860 2.0984 33 1 6.0629 -0.7644 1.9550 34 1 7.0257 -1.5559 4.0713 35 1 7.0623 -3.9540 4.6099 36 1 6.1366 -5.5964 3.0416 37 1 6.9589 -7.5646 1.2606 38 1 3.9412 -1.2849 -2.0988 39 1 3.9142 0.3405 -1.3677 40 1 1.6973 -1.7556 -1.2384 41 1 1.6564 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601314298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:31 Heat of formation + Delta-G solvation = -72.125671 kcal Electronic energy + Delta-G solvation = -23786.470562 eV Core-core repulsion = 20437.498476 eV Total energy + Delta-G solvation = -3348.972086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91626 -38.27837 -36.74434 -34.95749 -33.72685 -32.13701 -31.20589 -29.92189 -29.40230 -28.01936 -25.45613 -23.54359 -23.20131 -21.59107 -20.91986 -20.18759 -18.58281 -17.27023 -16.50022 -16.16719 -15.54484 -15.20271 -14.83927 -14.56448 -14.45693 -14.25962 -13.62184 -13.38482 -13.28603 -12.72419 -12.53272 -12.44501 -12.29023 -12.04555 -11.67000 -11.62506 -11.53606 -11.18265 -11.12762 -11.07750 -10.98072 -10.78597 -10.49057 -10.25054 -9.91237 -9.83637 -9.64644 -9.27792 -8.63637 -7.97950 -7.49142 -7.43019 -6.79775 -4.42433 2.51047 2.81130 3.07011 3.14173 3.20240 3.69362 3.92802 3.96846 4.20399 4.60724 4.70865 4.79023 4.89806 5.25199 5.39663 5.52732 5.57032 5.58510 5.65974 5.74599 5.83906 5.88287 5.97959 6.06816 6.10289 6.18715 6.23507 6.26245 6.37635 6.48190 6.60746 6.98861 7.11870 7.19787 7.26469 7.47305 7.63321 7.70193 7.90016 7.98774 8.14841 8.27463 8.56481 8.79573 8.86430 9.27445 10.12845 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005827 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.695313 B = 4803.995725 C = 5773.177966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.130 3.870 3 O -0.555 6.555 4 C -0.120 4.120 5 C 0.115 3.885 6 N -0.621 5.621 7 C 0.583 3.417 8 O -0.542 6.542 9 C -0.253 4.253 10 C -0.060 4.060 11 C -0.246 4.246 12 C -0.095 4.095 13 C -0.156 4.156 14 C 0.144 3.856 15 C -0.428 4.428 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.788 5.788 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.119 3.881 24 C -0.158 4.158 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.370 0.630 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.282 0.718 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 9.605 -0.766 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.090 3.910 3 O -0.361 6.361 4 C -0.158 4.158 5 C -0.008 4.008 6 N -0.356 5.356 7 C 0.376 3.624 8 O -0.419 6.419 9 C -0.258 4.258 10 C -0.079 4.079 11 C -0.266 4.266 12 C -0.114 4.114 13 C -0.175 4.175 14 C 0.140 3.860 15 C -0.457 4.457 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.413 5.413 19 Si 0.738 3.262 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.004 4.004 24 C -0.197 4.197 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.217 0.783 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.369 8.900 -0.746 12.944 hybrid contribution -0.613 -0.369 -0.957 1.195 sum -9.983 8.531 -1.703 13.241 Atomic orbital electron populations 1.22483 0.96019 1.02730 1.02147 1.21176 0.91946 0.82269 0.95635 1.86578 1.77255 1.23163 1.49071 1.21938 0.97211 1.00291 0.96387 1.21672 0.92433 0.99173 0.87572 1.48109 1.44709 1.36844 1.05931 1.18567 0.77214 0.76807 0.89822 1.90668 1.61321 1.55974 1.33920 1.19411 1.15651 0.94863 0.95890 1.20607 0.97402 0.96490 0.93356 1.20273 1.12173 0.95151 0.98962 1.20802 0.99137 0.93400 0.98052 1.21412 1.03299 0.99205 0.93586 1.17402 0.87895 0.89474 0.91193 1.19640 1.16455 0.93733 1.15845 0.90221 1.25984 0.94001 0.99643 0.94766 1.69705 1.16309 1.21334 1.33980 0.86163 0.80568 0.79757 0.79730 1.18336 1.19721 1.19693 1.21283 0.92284 0.98547 0.88289 1.22591 0.97402 1.02013 0.97691 0.91865 0.92571 0.91576 0.78304 0.90553 0.90204 0.91779 0.88273 0.88980 0.89125 0.89151 0.85785 0.90682 0.89444 0.92121 0.90590 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.81 37.16 0.33 -1.33 16 2 C 0.13 1.52 0.98 -90.58 -0.09 1.43 16 3 O -0.56 -6.28 11.71 -35.23 -0.41 -6.69 16 4 C -0.12 -1.63 5.11 -26.61 -0.14 -1.77 16 5 C 0.11 1.87 5.06 -3.70 -0.02 1.85 16 6 N -0.62 -11.74 2.97 -174.03 -0.52 -12.25 16 7 C 0.58 13.90 6.49 -12.52 -0.08 13.81 16 8 O -0.54 -14.72 15.27 5.27 0.08 -14.64 16 9 C -0.25 -6.26 4.84 -104.37 -0.51 -6.77 16 10 C -0.06 -1.32 7.56 -39.23 -0.30 -1.61 16 11 C -0.25 -5.31 10.03 -39.37 -0.39 -5.70 16 12 C -0.10 -2.16 10.01 -39.60 -0.40 -2.56 16 13 C -0.16 -3.96 8.66 -38.89 -0.34 -4.30 16 14 C 0.14 3.86 5.58 -106.54 -0.59 3.27 16 15 C -0.43 -11.70 7.92 -37.81 -0.30 -12.00 16 16 H 0.08 2.22 7.02 -52.48 -0.37 1.86 16 17 C 0.07 1.92 5.26 -17.30 -0.09 1.83 16 18 N -0.79 -20.48 10.81 55.56 0.60 -19.88 16 19 Si 0.91 19.42 29.58 -169.99 -5.03 14.40 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.12 1.90 6.20 -3.71 -0.02 1.87 16 24 C -0.16 -1.99 5.08 -26.61 -0.14 -2.13 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.37 2.75 9.05 45.56 0.41 3.17 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.00 7.81 -51.93 -0.41 0.60 16 32 H 0.10 1.78 5.16 -51.93 -0.27 1.51 16 33 H 0.09 1.82 7.39 -52.48 -0.39 1.43 16 34 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 37 H 0.28 6.61 8.29 -40.82 -0.34 6.28 16 38 H 0.09 1.55 6.99 -51.93 -0.36 1.18 16 39 H 0.06 0.88 7.81 -51.93 -0.41 0.48 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -30.79 328.07 -8.45 -39.24 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.05 Total: 8.99 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.07 Total: -14.11 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.08 Total: -32.13 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.33 Total: -21.33 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.79 -8.45 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.883 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds