Wall clock time and date at job start Tue Mar 31 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.45843 * 2 1 4 4 C 1.53032 * 109.46326 * 119.97139 * 2 1 3 5 5 C 1.53194 * 109.34237 * 181.35690 * 4 2 1 6 6 N 1.46936 * 108.77051 * 305.41281 * 5 4 2 7 7 C 1.34770 * 120.60483 * 233.57959 * 6 5 4 8 8 O 1.21608 * 119.99721 * 174.57656 * 7 6 5 9 9 C 1.47429 * 120.00072 * 354.57418 * 7 6 5 10 10 C 1.39224 * 120.28619 * 310.67179 * 9 7 6 11 11 C 1.38211 * 120.09599 * 179.97438 * 10 9 7 12 12 C 1.38826 * 120.67858 * 0.02598 * 11 10 9 13 13 C 1.37596 * 120.56606 * 359.97438 * 12 11 10 14 14 C 1.40703 * 119.88490 * 359.74606 * 13 12 11 15 15 C 1.40890 * 120.33070 * 180.25116 * 14 13 12 16 16 H 1.08006 * 119.99874 * 151.71764 * 15 14 13 17 17 C 1.40272 * 119.99989 * 331.71863 * 15 14 13 18 18 N 1.30623 * 120.00286 * 349.12817 * 17 15 14 19 19 Si 1.86799 * 120.00012 * 169.13208 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47529 * 119.99769 * 19 17 15 22 22 H 1.48503 * 109.47285 * 239.99949 * 19 17 15 23 23 C 1.46924 * 118.76384 * 53.55353 * 6 5 4 24 24 C 1.53042 * 109.44849 * 240.03654 * 2 1 3 25 25 H 1.09002 * 109.47132 * 300.02650 * 1 2 3 26 26 H 1.09000 * 109.47559 * 60.02574 * 1 2 3 27 27 H 1.08999 * 109.47392 * 180.02562 * 1 2 3 28 28 H 0.96709 * 114.00162 * 299.96969 * 3 2 1 29 29 H 1.09006 * 109.50007 * 301.32133 * 4 2 1 30 30 H 1.09000 * 109.49712 * 61.38646 * 4 2 1 31 31 H 1.09000 * 109.58777 * 65.16859 * 5 4 2 32 32 H 1.09001 * 109.58346 * 185.59416 * 5 4 2 33 33 H 1.08005 * 119.94621 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.66472 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.71837 * 179.97438 * 12 11 10 36 36 H 1.08009 * 120.05877 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00641 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58886 * 186.62518 * 23 6 5 39 39 H 1.09000 * 109.58504 * 66.20022 * 23 6 5 40 40 H 1.09006 * 109.49213 * 298.56770 * 24 2 1 41 41 H 1.08992 * 109.49851 * 58.63516 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0060 1.3474 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5714 -0.6896 1.2643 6 7 4.0677 -1.2493 -0.0004 7 6 4.9613 -2.2581 -0.0005 8 8 5.2901 -2.7789 -1.0491 9 6 5.5402 -2.7302 1.2705 10 6 6.0732 -1.8207 2.1800 11 6 6.6145 -2.2676 3.3706 12 6 6.6351 -3.6219 3.6752 13 6 6.1159 -4.5447 2.7964 14 6 5.5537 -4.1155 1.5801 15 6 5.0147 -5.0518 0.6758 16 1 4.2156 -4.7612 0.0099 17 6 5.5158 -6.3615 0.6405 18 7 6.6125 -6.6588 1.2847 19 14 4.6148 -7.6805 -0.3279 20 1 3.4082 -7.0914 -0.9624 21 1 5.5124 -8.2230 -1.3792 22 1 4.2069 -8.7757 0.5883 23 6 3.5711 -0.6889 -1.2646 24 6 2.0395 -0.7208 -1.2502 25 1 -0.3633 0.5143 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 -0.3634 -1.0276 0.0005 28 1 1.7209 1.8653 -0.7653 29 1 1.6575 -0.2207 2.1398 30 1 1.6972 -1.7555 1.2385 31 1 3.9150 0.3396 1.3677 32 1 3.9412 -1.2860 2.0984 33 1 6.0629 -0.7644 1.9550 34 1 7.0257 -1.5559 4.0713 35 1 7.0623 -3.9540 4.6099 36 1 6.1366 -5.5964 3.0416 37 1 6.9589 -7.5646 1.2606 38 1 3.9412 -1.2849 -2.0988 39 1 3.9142 0.3405 -1.3677 40 1 1.6973 -1.7556 -1.2384 41 1 1.6564 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601314298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:30 Heat of formation + Delta-G solvation = -92.312207 kcal Electronic energy + Delta-G solvation = -23787.345916 eV Core-core repulsion = 20437.498476 eV Total energy + Delta-G solvation = -3349.847440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36221 -39.70623 -38.51025 -36.37656 -35.58956 -33.26580 -32.52564 -31.74808 -31.08397 -29.18511 -27.33454 -24.99542 -24.44261 -23.12420 -22.74386 -21.41552 -20.12295 -19.14125 -18.09727 -17.33352 -17.19559 -16.86498 -16.15380 -16.10840 -15.70228 -15.46117 -15.26972 -15.01008 -14.49807 -14.36167 -14.14705 -13.98102 -13.62244 -13.45266 -13.05970 -12.89363 -12.85606 -12.74318 -12.69808 -12.60881 -12.24302 -12.20029 -12.12219 -11.78355 -11.52522 -11.35345 -11.13608 -10.80055 -10.47646 -9.56176 -9.31652 -9.30587 -8.68730 -6.41676 0.64774 0.99869 1.30493 1.45192 1.46120 2.03135 2.16523 2.29715 2.70764 3.33274 3.65452 3.69743 3.76310 3.94236 4.06939 4.18580 4.33812 4.38018 4.47394 4.58629 4.63001 4.69462 4.77647 4.79910 4.86792 4.88246 5.02691 5.04456 5.06878 5.08428 5.23899 5.30123 5.34154 5.36764 5.57653 5.77084 5.86386 6.01351 6.10550 6.27751 6.52085 6.65785 6.86008 6.93847 6.97316 7.48546 8.26376 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005827 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.695313 B = 4803.995725 C = 5773.177966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 O -0.565 6.565 4 C -0.121 4.121 5 C 0.113 3.887 6 N -0.612 5.612 7 C 0.575 3.425 8 O -0.591 6.591 9 C -0.269 4.269 10 C -0.057 4.057 11 C -0.234 4.234 12 C -0.093 4.093 13 C -0.181 4.181 14 C 0.113 3.887 15 C -0.465 4.465 16 H 0.056 0.944 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.978 3.022 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.250 1.250 23 C 0.113 3.887 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.390 0.610 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.291 0.709 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 11.736 -0.119 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.098 3.902 3 O -0.373 6.373 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.345 5.345 7 C 0.368 3.632 8 O -0.472 6.472 9 C -0.273 4.273 10 C -0.076 4.076 11 C -0.253 4.253 12 C -0.111 4.111 13 C -0.200 4.200 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.074 0.926 17 C -0.180 4.180 18 N -0.444 5.444 19 Si 0.799 3.201 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.174 1.174 23 C -0.009 4.009 24 C -0.190 4.190 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.240 0.760 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.613 11.088 -0.073 15.349 hybrid contribution -0.190 -0.800 -1.082 1.359 sum -10.803 10.288 -1.155 14.963 Atomic orbital electron populations 1.22403 0.93779 1.02947 1.03573 1.20994 0.93403 0.82296 0.93534 1.86531 1.77592 1.22697 1.50455 1.21936 0.94972 1.00284 0.98714 1.21793 0.94465 0.99057 0.85570 1.48114 1.42990 1.35238 1.08195 1.18608 0.77987 0.77701 0.88934 1.90624 1.63399 1.57995 1.35191 1.19718 1.15897 0.94842 0.96864 1.20891 0.96316 0.97373 0.93025 1.20740 1.10204 0.95347 0.99040 1.21155 0.97848 0.93635 0.98492 1.21379 1.05192 0.99262 0.94167 1.17754 0.88811 0.90622 0.91844 1.19622 1.17403 0.95492 1.16924 0.92585 1.26722 0.94562 1.01063 0.95695 1.69730 1.17165 1.22271 1.35228 0.85224 0.78893 0.77355 0.78630 1.19243 1.19182 1.17373 1.21514 0.94781 0.98674 0.85956 1.22572 0.94559 1.01713 1.00153 0.91247 0.90388 0.91994 0.76026 0.88616 0.91649 0.90285 0.90151 0.86372 0.85176 0.86166 0.87246 0.89827 0.92002 0.90022 0.92469 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 8.81 71.98 0.63 -1.99 16 2 C 0.14 2.85 0.98 -10.77 -0.01 2.84 16 3 O -0.56 -10.60 11.71 -148.98 -1.74 -12.35 16 4 C -0.12 -3.11 5.11 30.67 0.16 -2.95 16 5 C 0.11 3.58 5.06 86.36 0.44 4.02 16 6 N -0.61 -23.32 2.97 -822.75 -2.45 -25.76 16 7 C 0.58 28.50 6.49 86.67 0.56 29.06 16 8 O -0.59 -34.00 15.27 -4.06 -0.06 -34.07 16 9 C -0.27 -13.64 4.84 -19.70 -0.10 -13.73 16 10 C -0.06 -2.47 7.56 22.50 0.17 -2.30 16 11 C -0.23 -9.54 10.03 22.40 0.22 -9.31 16 12 C -0.09 -4.11 10.01 22.26 0.22 -3.89 16 13 C -0.18 -9.45 8.66 22.72 0.20 -9.25 16 14 C 0.11 6.33 5.58 -21.11 -0.12 6.22 16 15 C -0.47 -27.04 7.92 23.41 0.19 -26.85 16 16 H 0.06 3.39 7.02 -2.91 -0.02 3.37 16 17 C 0.03 1.87 5.26 85.37 0.45 2.32 16 18 N -0.82 -44.15 10.81 21.88 0.24 -43.91 16 19 Si 0.98 41.38 29.58 68.60 2.03 43.41 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 23 C 0.11 3.54 6.20 86.36 0.54 4.07 16 24 C -0.15 -3.56 5.08 30.67 0.16 -3.40 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.39 4.06 9.05 -74.05 -0.67 3.39 16 29 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.28 7.81 -2.39 -0.02 2.26 16 32 H 0.08 2.85 5.16 -2.39 -0.01 2.83 16 33 H 0.12 4.40 7.39 -2.91 -0.02 4.38 16 34 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.11 5.95 6.18 -2.91 -0.02 5.93 16 37 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 38 H 0.06 2.26 6.99 -2.39 -0.02 2.25 16 39 H 0.08 2.22 7.81 -2.39 -0.02 2.20 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.14 328.07 2.09 -69.05 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.37 Total: 28.80 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.71 Total: -25.17 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -2.21 Total: -69.67 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -1.81 Total: -46.41 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.14 2.09 -69.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.266 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds