Wall clock time and date at job start Tue Mar 31 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.52602 * 2 1 4 4 C 1.53041 * 109.50123 * 239.91656 * 2 1 3 5 5 C 1.53038 * 109.54058 * 178.68438 * 4 2 1 6 6 C 1.53188 * 109.31145 * 61.36610 * 5 4 2 7 7 N 1.46927 * 108.77791 * 305.36679 * 6 5 4 8 8 C 1.34781 * 120.62959 * 233.58570 * 7 6 5 9 9 O 1.21604 * 120.00091 * 174.58499 * 8 7 6 10 10 C 1.47433 * 119.99773 * 354.58691 * 8 7 6 11 11 C 1.39221 * 120.28668 * 310.68870 * 10 8 7 12 12 C 1.38216 * 120.09473 * 180.28109 * 11 10 8 13 13 C 1.38827 * 120.67472 * 359.72580 * 12 11 10 14 14 C 1.37597 * 120.57107 * 359.97438 * 13 12 11 15 15 C 1.40704 * 119.88175 * 359.97438 * 14 13 12 16 16 C 1.40884 * 120.32856 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99936 * 151.62158 * 16 15 14 18 18 C 1.40273 * 120.00308 * 331.61985 * 16 15 14 19 19 N 1.30629 * 119.99998 * 349.15495 * 18 16 15 20 20 Si 1.86800 * 120.00226 * 169.15072 * 18 16 15 21 21 H 1.48497 * 109.47156 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47328 * 300.00316 * 20 18 16 23 23 H 1.48505 * 109.47240 * 60.00282 * 20 18 16 24 24 C 1.46918 * 118.73758 * 53.85713 * 7 6 5 25 25 H 1.09005 * 109.47413 * 180.08197 * 1 2 3 26 26 H 1.08999 * 109.47082 * 300.08306 * 1 2 3 27 27 H 1.08999 * 109.46984 * 60.07870 * 1 2 3 28 28 H 0.96698 * 113.99564 * 59.91815 * 3 2 1 29 29 H 1.09001 * 109.45660 * 58.66284 * 4 2 1 30 30 H 1.09001 * 109.44541 * 298.69957 * 4 2 1 31 31 H 1.09004 * 109.49797 * 301.41525 * 5 4 2 32 32 H 1.09000 * 109.49612 * 181.31604 * 5 4 2 33 33 H 1.09005 * 109.58999 * 185.57708 * 6 5 4 34 34 H 1.09002 * 109.70214 * 65.22485 * 6 5 4 35 35 H 1.08002 * 119.95453 * 0.02562 * 11 10 8 36 36 H 1.07994 * 119.66593 * 179.74348 * 12 11 10 37 37 H 1.07998 * 119.71673 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.06182 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00177 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.58837 * 65.93077 * 24 7 6 41 41 H 1.09005 * 109.58794 * 186.35383 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1052 -1.4267 -0.0307 7 7 3.5045 -0.8292 1.1697 8 6 4.2810 -0.3865 2.1784 9 8 3.7797 0.1946 3.1217 10 6 5.7383 -0.6066 2.1382 11 6 6.2499 -1.8716 1.8616 12 6 7.6166 -2.0748 1.8306 13 6 8.4942 -1.0256 2.0678 14 6 8.0187 0.2371 2.3378 15 6 6.6317 0.4709 2.3741 16 6 6.1346 1.7601 2.6491 17 1 5.1786 2.0666 2.2508 18 6 6.8812 2.6458 3.4403 19 7 7.9264 2.2147 4.0945 20 14 6.3808 4.4416 3.5582 21 1 7.3255 5.1612 4.4497 22 1 6.4130 5.0543 2.2059 23 1 5.0063 4.5372 4.1123 24 6 2.0411 -0.7289 1.2520 25 1 -0.3634 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5126 -0.8907 28 1 1.7217 1.8655 0.7644 29 1 1.6582 -0.2245 -2.1389 30 1 1.6967 -1.7573 -1.2349 31 1 3.9160 0.3388 -1.2540 32 1 3.9334 -1.1898 -2.1670 33 1 5.1896 -1.3247 0.0139 34 1 3.8396 -2.4824 -0.0853 35 1 5.5778 -2.6961 1.6751 36 1 8.0059 -3.0597 1.6194 37 1 9.5594 -1.2017 2.0393 38 1 8.7089 1.0474 2.5206 39 1 8.4429 2.8272 4.6413 40 1 1.6084 -1.7283 1.2985 41 1 1.7629 -0.1663 2.1432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601397584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:09 Heat of formation + Delta-G solvation = -71.612128 kcal Electronic energy + Delta-G solvation = -23990.181374 eV Core-core repulsion = 20641.231557 eV Total energy + Delta-G solvation = -3348.949817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.89923 -38.08279 -36.61268 -35.11073 -33.71471 -32.21219 -31.24291 -30.01779 -29.51382 -26.74888 -25.69954 -24.88252 -22.20423 -21.77666 -20.92024 -19.97634 -18.60376 -17.22751 -16.44895 -16.34207 -15.51968 -15.09010 -14.87051 -14.62378 -14.30166 -14.12510 -13.60417 -13.48156 -12.93037 -12.77595 -12.59208 -12.43994 -12.19629 -12.13799 -11.92528 -11.64130 -11.47697 -11.15940 -11.10229 -10.90805 -10.76012 -10.65884 -10.44696 -10.25047 -9.93918 -9.88783 -9.64718 -9.24338 -8.64904 -7.95181 -7.48857 -7.42240 -6.78313 -4.40743 2.52341 2.83860 3.07539 3.12651 3.24121 3.62648 3.94560 3.97595 4.37016 4.62373 4.71834 4.88568 4.96228 5.23634 5.42717 5.43783 5.59307 5.62220 5.66397 5.77034 5.81707 5.91713 5.97251 6.01389 6.08544 6.11718 6.25532 6.30283 6.38070 6.59396 6.61178 6.99820 7.11488 7.16758 7.25782 7.47802 7.69882 7.86657 7.90387 7.99330 8.15174 8.26376 8.57733 8.80842 8.87706 9.26372 10.14307 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.006657 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.511200 B = 4205.206878 C = 5452.387482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 O -0.549 6.549 4 C -0.101 4.101 5 C -0.132 4.132 6 C 0.109 3.891 7 N -0.614 5.614 8 C 0.587 3.413 9 O -0.543 6.543 10 C -0.253 4.253 11 C -0.061 4.061 12 C -0.247 4.247 13 C -0.096 4.096 14 C -0.155 4.155 15 C 0.145 3.855 16 C -0.426 4.426 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.789 5.789 20 Si 0.914 3.086 21 H -0.278 1.278 22 H -0.263 1.263 23 H -0.263 1.263 24 C 0.089 3.911 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.376 0.624 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.063 0.937 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -4.297 -8.480 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.073 3.927 3 O -0.354 6.354 4 C -0.139 4.139 5 C -0.171 4.171 6 C -0.014 4.014 7 N -0.349 5.349 8 C 0.380 3.620 9 O -0.420 6.420 10 C -0.258 4.258 11 C -0.080 4.080 12 C -0.267 4.267 13 C -0.114 4.114 14 C -0.174 4.174 15 C 0.141 3.859 16 C -0.455 4.455 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.414 5.414 20 Si 0.738 3.262 21 H -0.202 1.202 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.034 4.034 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.223 0.777 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.664 -4.086 -8.328 12.693 hybrid contribution -0.498 0.777 0.674 1.142 sum -9.161 -3.309 -7.654 12.388 Atomic orbital electron populations 1.22437 0.95798 1.02546 1.02572 1.21622 0.91846 0.83553 0.95675 1.86542 1.77346 1.22381 1.49162 1.21480 0.96741 0.99294 0.96356 1.21859 0.94886 1.02643 0.97673 1.21779 1.00465 0.95259 0.83933 1.47968 1.04908 1.63175 1.18836 1.18533 0.87010 0.75820 0.80652 1.90657 1.75298 1.41420 1.34623 1.19394 0.90568 0.94898 1.20921 1.20584 0.94735 0.94695 0.97955 1.20255 0.93019 0.97815 1.15572 1.20795 0.97310 0.93899 0.99428 1.21414 0.95680 0.96154 1.04191 1.17386 0.90788 0.91382 0.86311 1.19601 1.03958 0.96600 1.25335 0.90121 1.25991 0.93664 1.01184 0.93541 1.69693 1.14309 1.37085 1.20328 0.86262 0.79685 0.81043 0.79224 1.20246 1.18716 1.18697 1.22187 0.82206 1.00263 0.98793 0.91676 0.92171 0.91761 0.77675 0.91542 0.91055 0.90344 0.91350 0.88085 0.92813 0.89115 0.89176 0.89172 0.85808 0.90593 0.91925 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.82 37.16 0.33 -1.44 16 2 C 0.11 1.51 1.01 -90.28 -0.09 1.42 16 3 O -0.55 -8.55 12.18 -35.23 -0.43 -8.98 16 4 C -0.10 -1.22 4.92 -26.69 -0.13 -1.36 16 5 C -0.13 -1.84 5.94 -26.61 -0.16 -2.00 16 6 C 0.11 1.72 5.30 -3.71 -0.02 1.71 16 7 N -0.61 -11.42 2.91 -173.77 -0.50 -11.92 16 8 C 0.59 13.86 6.49 -12.51 -0.08 13.78 16 9 O -0.54 -14.53 15.28 5.27 0.08 -14.45 16 10 C -0.25 -6.25 4.84 -104.37 -0.51 -6.75 16 11 C -0.06 -1.33 7.56 -39.22 -0.30 -1.63 16 12 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 13 C -0.10 -2.18 10.01 -39.60 -0.40 -2.57 16 14 C -0.16 -3.97 8.66 -38.88 -0.34 -4.31 16 15 C 0.15 3.91 5.58 -106.54 -0.59 3.31 16 16 C -0.43 -11.74 7.91 -37.82 -0.30 -12.03 16 17 H 0.08 2.27 7.03 -52.48 -0.37 1.90 16 18 C 0.07 1.93 5.26 -17.30 -0.09 1.84 16 19 N -0.79 -20.59 10.82 55.56 0.60 -19.99 16 20 Si 0.91 19.57 29.58 -169.99 -5.03 14.55 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 24 C 0.09 1.38 5.41 -3.49 -0.02 1.36 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.38 5.14 9.05 45.56 0.41 5.55 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.31 7.61 -51.93 -0.40 0.92 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.80 5.16 -51.93 -0.27 1.53 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.74 7.39 -52.49 -0.39 1.35 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.12 3.25 6.19 -52.49 -0.32 2.92 16 39 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.54 7.00 -51.93 -0.36 1.18 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -30.86 328.78 -8.47 -39.33 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.06 Total: 10.90 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.09 Total: -14.38 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.10 Total: -31.91 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.35 Total: -23.43 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.86 -8.47 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601397584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.279 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds