Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.52602 * 2 1 4 4 C 1.53041 * 109.50123 * 239.91656 * 2 1 3 5 5 C 1.53038 * 109.54058 * 178.68438 * 4 2 1 6 6 C 1.53188 * 109.31145 * 61.36610 * 5 4 2 7 7 N 1.46927 * 108.77791 * 305.36679 * 6 5 4 8 8 C 1.34781 * 120.62959 * 233.58570 * 7 6 5 9 9 O 1.21604 * 120.00091 * 174.58499 * 8 7 6 10 10 C 1.47433 * 119.99773 * 354.58691 * 8 7 6 11 11 C 1.39221 * 120.28668 * 310.68870 * 10 8 7 12 12 C 1.38216 * 120.09473 * 180.28109 * 11 10 8 13 13 C 1.38827 * 120.67472 * 359.72580 * 12 11 10 14 14 C 1.37597 * 120.57107 * 359.97438 * 13 12 11 15 15 C 1.40704 * 119.88175 * 359.97438 * 14 13 12 16 16 C 1.40884 * 120.32856 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99936 * 151.62158 * 16 15 14 18 18 C 1.40273 * 120.00308 * 331.61985 * 16 15 14 19 19 N 1.30629 * 119.99998 * 349.15495 * 18 16 15 20 20 Si 1.86800 * 120.00226 * 169.15072 * 18 16 15 21 21 H 1.48497 * 109.47156 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47328 * 300.00316 * 20 18 16 23 23 H 1.48505 * 109.47240 * 60.00282 * 20 18 16 24 24 C 1.46918 * 118.73758 * 53.85713 * 7 6 5 25 25 H 1.09005 * 109.47413 * 180.08197 * 1 2 3 26 26 H 1.08999 * 109.47082 * 300.08306 * 1 2 3 27 27 H 1.08999 * 109.46984 * 60.07870 * 1 2 3 28 28 H 0.96698 * 113.99564 * 59.91815 * 3 2 1 29 29 H 1.09001 * 109.45660 * 58.66284 * 4 2 1 30 30 H 1.09001 * 109.44541 * 298.69957 * 4 2 1 31 31 H 1.09004 * 109.49797 * 301.41525 * 5 4 2 32 32 H 1.09000 * 109.49612 * 181.31604 * 5 4 2 33 33 H 1.09005 * 109.58999 * 185.57708 * 6 5 4 34 34 H 1.09002 * 109.70214 * 65.22485 * 6 5 4 35 35 H 1.08002 * 119.95453 * 0.02562 * 11 10 8 36 36 H 1.07994 * 119.66593 * 179.74348 * 12 11 10 37 37 H 1.07998 * 119.71673 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.06182 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00177 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.58837 * 65.93077 * 24 7 6 41 41 H 1.09005 * 109.58794 * 186.35383 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1052 -1.4267 -0.0307 7 7 3.5045 -0.8292 1.1697 8 6 4.2810 -0.3865 2.1784 9 8 3.7797 0.1946 3.1217 10 6 5.7383 -0.6066 2.1382 11 6 6.2499 -1.8716 1.8616 12 6 7.6166 -2.0748 1.8306 13 6 8.4942 -1.0256 2.0678 14 6 8.0187 0.2371 2.3378 15 6 6.6317 0.4709 2.3741 16 6 6.1346 1.7601 2.6491 17 1 5.1786 2.0666 2.2508 18 6 6.8812 2.6458 3.4403 19 7 7.9264 2.2147 4.0945 20 14 6.3808 4.4416 3.5582 21 1 7.3255 5.1612 4.4497 22 1 6.4130 5.0543 2.2059 23 1 5.0063 4.5372 4.1123 24 6 2.0411 -0.7289 1.2520 25 1 -0.3634 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5126 -0.8907 28 1 1.7217 1.8655 0.7644 29 1 1.6582 -0.2245 -2.1389 30 1 1.6967 -1.7573 -1.2349 31 1 3.9160 0.3388 -1.2540 32 1 3.9334 -1.1898 -2.1670 33 1 5.1896 -1.3247 0.0139 34 1 3.8396 -2.4824 -0.0853 35 1 5.5778 -2.6961 1.6751 36 1 8.0059 -3.0597 1.6194 37 1 9.5594 -1.2017 2.0393 38 1 8.7089 1.0474 2.5206 39 1 8.4429 2.8272 4.6413 40 1 1.6084 -1.7283 1.2985 41 1 1.7629 -0.1663 2.1432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601397584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = -92.135939 kcal Electronic energy + Delta-G solvation = -23991.071354 eV Core-core repulsion = 20641.231557 eV Total energy + Delta-G solvation = -3349.839796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.35943 -39.60142 -38.37842 -36.51447 -35.58723 -33.51217 -32.44072 -31.81889 -31.28719 -27.94711 -27.33152 -26.42568 -23.65033 -23.20014 -22.76315 -21.18857 -20.19008 -19.11270 -17.99490 -17.68721 -17.30963 -16.68579 -16.10586 -16.03914 -15.86014 -15.45660 -15.14595 -14.99003 -14.49794 -14.16455 -14.11162 -13.88045 -13.66723 -13.48580 -13.17008 -13.03624 -12.95911 -12.82993 -12.62862 -12.53953 -12.23701 -11.93056 -11.90242 -11.80093 -11.49446 -11.33692 -11.15333 -11.04981 -10.44674 -9.49217 -9.30454 -9.26405 -8.68125 -6.40612 0.66690 1.01501 1.29818 1.41403 1.48372 2.02559 2.16511 2.33023 2.71798 3.33282 3.63992 3.67132 3.85676 3.91700 4.12419 4.19020 4.30832 4.40774 4.51266 4.58818 4.61876 4.72261 4.77383 4.80345 4.87201 4.91914 4.97458 5.07457 5.13311 5.23055 5.24557 5.26775 5.35827 5.46738 5.58794 5.76913 5.86718 6.02319 6.11147 6.28863 6.52903 6.66519 6.77172 6.87198 6.94966 7.51399 8.26629 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.006657 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.511200 B = 4205.206878 C = 5452.387482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 O -0.574 6.574 4 C -0.099 4.099 5 C -0.128 4.128 6 C 0.103 3.897 7 N -0.606 5.606 8 C 0.578 3.422 9 O -0.591 6.591 10 C -0.268 4.268 11 C -0.057 4.057 12 C -0.235 4.235 13 C -0.094 4.094 14 C -0.182 4.182 15 C 0.112 3.888 16 C -0.465 4.465 17 H 0.055 0.945 18 C 0.035 3.965 19 N -0.819 5.819 20 Si 0.976 3.024 21 H -0.256 1.256 22 H -0.257 1.257 23 H -0.272 1.272 24 C 0.083 3.917 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.378 0.622 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.291 0.709 40 H 0.095 0.905 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 -6.642 -10.252 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 O -0.381 6.381 4 C -0.136 4.136 5 C -0.166 4.166 6 C -0.019 4.019 7 N -0.339 5.339 8 C 0.371 3.629 9 O -0.473 6.473 10 C -0.272 4.272 11 C -0.076 4.076 12 C -0.253 4.253 13 C -0.113 4.113 14 C -0.202 4.202 15 C 0.109 3.891 16 C -0.495 4.495 17 H 0.074 0.926 18 C -0.180 4.180 19 N -0.445 5.445 20 Si 0.797 3.203 21 H -0.180 1.180 22 H -0.181 1.181 23 H -0.197 1.197 24 C -0.039 4.039 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.226 0.774 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.654 -6.469 -10.152 15.431 hybrid contribution -0.204 1.280 1.132 1.721 sum -9.858 -5.188 -9.021 14.334 Atomic orbital electron populations 1.22351 0.92922 1.04175 1.02974 1.21864 0.93983 0.82121 0.95061 1.86526 1.78176 1.23898 1.49459 1.21564 0.94984 1.01081 0.95990 1.21812 0.96573 1.00342 0.97890 1.22011 0.99206 0.97338 0.83359 1.47953 1.06179 1.61541 1.18180 1.18540 0.87186 0.75923 0.81290 1.90615 1.76005 1.43731 1.36911 1.19747 0.91388 0.95684 1.20430 1.20916 0.95718 0.94288 0.96657 1.20748 0.92633 0.99094 1.12873 1.21154 0.99251 0.93015 0.97859 1.21369 0.95056 0.97300 1.06449 1.17755 0.92006 0.92116 0.87260 1.19571 1.03795 0.98310 1.27783 0.92634 1.26706 0.93645 1.04891 0.92751 1.69723 1.15237 1.38467 1.21039 0.85348 0.78990 0.76279 0.79668 1.17966 1.18076 1.19731 1.22487 0.80162 1.02047 0.99234 0.89364 0.92238 0.90982 0.77398 0.90413 0.87840 0.94231 0.88316 0.90388 0.89042 0.85860 0.85049 0.86283 0.87456 0.89859 0.88700 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 8.82 71.98 0.64 -2.25 16 2 C 0.11 2.72 1.01 -10.57 -0.01 2.71 16 3 O -0.57 -18.22 12.18 -148.98 -1.81 -20.03 16 4 C -0.10 -2.05 4.92 30.62 0.15 -1.90 16 5 C -0.13 -3.29 5.94 30.67 0.18 -3.11 16 6 C 0.10 3.04 5.30 86.36 0.46 3.50 16 7 N -0.61 -22.25 2.91 -821.93 -2.39 -24.64 16 8 C 0.58 28.18 6.49 86.66 0.56 28.75 16 9 O -0.59 -33.48 15.28 -4.04 -0.06 -33.55 16 10 C -0.27 -13.53 4.84 -19.70 -0.10 -13.62 16 11 C -0.06 -2.41 7.56 22.50 0.17 -2.24 16 12 C -0.23 -9.42 10.03 22.41 0.22 -9.19 16 13 C -0.09 -4.19 10.01 22.26 0.22 -3.97 16 14 C -0.18 -9.64 8.66 22.72 0.20 -9.44 16 15 C 0.11 6.33 5.58 -21.11 -0.12 6.21 16 16 C -0.47 -27.41 7.91 23.41 0.19 -27.22 16 17 H 0.06 3.41 7.03 -2.91 -0.02 3.39 16 18 C 0.04 1.92 5.26 85.37 0.45 2.37 16 19 N -0.82 -44.69 10.82 21.88 0.24 -44.46 16 20 Si 0.98 42.11 29.58 68.60 2.03 44.13 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 C 0.08 2.47 5.41 86.51 0.47 2.94 16 25 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.38 11.03 9.05 -74.06 -0.67 10.36 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.32 7.61 -2.39 -0.02 1.31 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.68 5.16 -2.38 -0.01 2.67 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.12 4.31 7.39 -2.91 -0.02 4.29 16 36 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.11 5.92 6.19 -2.91 -0.02 5.90 16 39 H 0.29 14.28 8.29 -92.71 -0.77 13.51 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 2.30 7.00 -2.38 -0.02 2.29 16 Total: -1.00 -72.78 328.78 2.05 -70.73 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.37 Total: 34.27 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.68 Total: -26.47 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -2.15 Total: -69.09 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -1.88 Total: -53.58 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.78 2.05 -70.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601397584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.404 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds