Wall clock time and date at job start Tue Mar 31 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.50161 * 2 1 4 4 C 1.53042 * 109.49497 * 120.06625 * 2 1 3 5 5 C 1.53047 * 109.53419 * 181.34966 * 4 2 1 6 6 C 1.53190 * 109.31289 * 298.62872 * 5 4 2 7 7 N 1.46933 * 108.77186 * 54.63665 * 6 5 4 8 8 C 1.34785 * 120.62680 * 126.37184 * 7 6 5 9 9 O 1.21606 * 119.99565 * 184.75406 * 8 7 6 10 10 C 1.47431 * 120.00158 * 4.74674 * 8 7 6 11 11 C 1.39225 * 120.27891 * 51.85585 * 10 8 7 12 12 C 1.38223 * 120.09087 * 180.27323 * 11 10 8 13 13 C 1.38821 * 120.67482 * 359.76615 * 12 11 10 14 14 C 1.37600 * 120.57198 * 359.95037 * 13 12 11 15 15 C 1.40706 * 119.88057 * 0.02562 * 14 13 12 16 16 C 1.40887 * 120.32822 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99823 * 215.11878 * 16 15 14 18 18 C 1.40270 * 120.00070 * 35.12207 * 16 15 14 19 19 N 1.30637 * 120.00183 * 23.19150 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 202.92206 * 18 16 15 21 21 H 1.48508 * 109.47100 * 180.27423 * 20 18 16 22 22 H 1.48498 * 109.47363 * 300.27262 * 20 18 16 23 23 H 1.48503 * 109.47204 * 60.27453 * 20 18 16 24 24 C 1.46923 * 118.74038 * 306.64168 * 7 6 5 25 25 H 1.09003 * 109.46657 * 299.94101 * 1 2 3 26 26 H 1.09001 * 109.47234 * 59.93425 * 1 2 3 27 27 H 1.08991 * 109.47426 * 179.97438 * 1 2 3 28 28 H 0.96702 * 113.99670 * 300.06573 * 3 2 1 29 29 H 1.08993 * 109.46148 * 61.33117 * 4 2 1 30 30 H 1.08994 * 109.45815 * 301.36138 * 4 2 1 31 31 H 1.08997 * 109.49577 * 178.68269 * 5 4 2 32 32 H 1.08996 * 109.52805 * 58.60054 * 5 4 2 33 33 H 1.09001 * 109.58743 * 294.85457 * 6 5 4 34 34 H 1.08994 * 109.70562 * 174.49480 * 6 5 4 35 35 H 1.08001 * 119.95890 * 359.97438 * 11 10 8 36 36 H 1.08003 * 119.66253 * 179.73449 * 12 11 10 37 37 H 1.08000 * 119.71841 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.06023 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99099 * 2.58751 * 19 18 16 40 40 H 1.09006 * 109.58357 * 173.14193 * 24 7 6 41 41 H 1.08995 * 109.58746 * 293.57190 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0407 -0.7228 1.2486 5 6 3.5708 -0.6940 1.2666 6 6 4.1059 -1.4256 0.0317 7 7 3.5052 -0.8284 -1.1689 8 6 4.2819 -0.3847 -2.1772 9 8 3.7791 0.1854 -3.1264 10 6 5.7410 -0.5903 -2.1292 11 6 6.2638 -1.8592 -1.8944 12 6 7.6323 -2.0466 -1.8446 13 6 8.5005 -0.9796 -2.0316 14 6 8.0139 0.2850 -2.2712 15 6 6.6248 0.5025 -2.3273 16 6 6.1163 1.7933 -2.5726 17 1 5.2020 2.1132 -2.0951 18 6 6.7975 2.6630 -3.4370 19 7 7.6047 2.1821 -4.3446 20 14 6.5445 4.5083 -3.2955 21 1 7.3670 5.2007 -4.3199 22 1 5.1109 4.8295 -3.5118 23 1 6.9546 4.9618 -1.9421 24 6 2.0422 -0.7187 -1.2469 25 1 -0.3633 0.5129 0.8906 26 1 -0.3634 0.5149 -0.8894 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7211 1.8655 -0.7646 29 1 1.6972 -1.7571 1.2355 30 1 1.6577 -0.2242 2.1389 31 1 3.9334 -1.1884 2.1678 32 1 3.9159 0.3398 1.2550 33 1 3.8386 -2.4808 0.0877 34 1 5.1903 -1.3253 -0.0138 35 1 5.5990 -2.6974 -1.7463 36 1 8.0303 -3.0331 -1.6578 37 1 9.5671 -1.1435 -1.9891 38 1 8.6968 1.1090 -2.4159 39 1 7.7044 1.2225 -4.4455 40 1 1.7653 -0.1497 -2.1345 41 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601397585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:12 Heat of formation + Delta-G solvation = -79.122679 kcal Electronic energy + Delta-G solvation = -24043.341839 eV Core-core repulsion = 20694.066340 eV Total energy + Delta-G solvation = -3349.275499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98443 -38.21926 -36.78553 -35.16067 -33.87168 -32.26030 -31.30437 -30.04535 -29.43711 -26.81643 -25.61860 -24.82402 -22.26777 -21.93679 -21.01633 -20.04370 -18.82201 -17.69114 -16.50904 -16.40951 -15.43818 -14.98035 -14.80550 -14.68770 -14.37636 -14.02405 -13.83438 -13.68563 -12.96441 -12.81871 -12.67935 -12.41134 -12.28588 -12.20356 -12.00848 -11.96958 -11.51753 -11.24014 -11.02053 -10.86119 -10.76618 -10.66628 -10.37345 -10.29007 -10.08778 -9.95827 -9.54728 -8.99549 -8.75434 -8.01831 -7.72579 -7.60303 -7.20725 -4.46993 2.38699 2.73533 3.19289 3.28424 3.39221 3.54570 3.86520 4.04587 4.33157 4.57568 4.68607 4.84450 4.94434 5.18701 5.37099 5.38376 5.39821 5.58645 5.60960 5.72214 5.75681 5.87039 5.91352 5.94404 5.98164 6.07034 6.13560 6.20701 6.27264 6.46421 6.55546 6.76157 6.98688 7.07586 7.28103 7.51288 7.62892 7.72046 7.83297 7.84148 8.03024 8.18116 8.23056 8.67472 8.81881 9.18237 10.06262 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.006688 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.621013 B = 4185.512049 C = 5378.162940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.115 3.885 3 O -0.549 6.549 4 C -0.101 4.101 5 C -0.132 4.132 6 C 0.109 3.891 7 N -0.613 5.613 8 C 0.588 3.412 9 O -0.541 6.541 10 C -0.250 4.250 11 C -0.050 4.050 12 C -0.257 4.257 13 C -0.075 4.075 14 C -0.204 4.204 15 C 0.129 3.871 16 C -0.491 4.491 17 H 0.078 0.922 18 C 0.039 3.961 19 N -0.790 5.790 20 Si 1.067 2.933 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.274 1.274 24 C 0.089 3.911 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.376 0.624 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.298 0.702 40 H 0.091 0.909 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -4.817 9.139 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.073 3.927 3 O -0.355 6.355 4 C -0.139 4.139 5 C -0.171 4.171 6 C -0.014 4.014 7 N -0.348 5.348 8 C 0.380 3.620 9 O -0.418 6.418 10 C -0.255 4.255 11 C -0.068 4.068 12 C -0.276 4.276 13 C -0.094 4.094 14 C -0.223 4.223 15 C 0.125 3.875 16 C -0.518 4.518 17 H 0.096 0.904 18 C -0.183 4.183 19 N -0.412 5.412 20 Si 0.890 3.110 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.034 4.034 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.224 0.776 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.534 -3.262 8.465 12.455 hybrid contribution -0.798 -1.571 0.173 1.770 sum -9.332 -4.833 8.638 13.604 Atomic orbital electron populations 1.22433 0.95675 1.02574 1.02642 1.21467 0.91970 0.83594 0.95663 1.86544 1.77338 1.22400 1.49233 1.21479 0.96658 0.99321 0.96410 1.21854 0.94952 1.02636 0.97620 1.21753 1.00313 0.95333 0.83997 1.47965 1.04976 1.63003 1.18828 1.18469 0.86946 0.75720 0.80823 1.90664 1.75247 1.41623 1.34231 1.19406 0.90767 0.94336 1.20984 1.20660 0.94782 0.94708 0.96695 1.20228 0.92962 0.97611 1.16828 1.20728 0.97461 0.93362 0.97845 1.21151 0.95145 0.96102 1.09915 1.17404 0.90582 0.91721 0.87812 1.20521 1.09358 0.97333 1.24581 0.90364 1.27061 0.91560 1.08074 0.91630 1.70398 1.27495 1.19384 1.23924 0.83612 0.77589 0.72334 0.77447 1.19806 1.19998 1.19925 1.22020 0.82132 1.00395 0.98890 0.91690 0.92128 0.91664 0.77632 0.91027 0.91459 0.91315 0.90350 0.92764 0.88289 0.88924 0.88861 0.88895 0.87730 0.88855 0.89099 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.82 37.16 0.33 -1.43 16 2 C 0.11 1.51 1.00 -90.72 -0.09 1.42 16 3 O -0.55 -8.59 12.17 -35.23 -0.43 -9.02 16 4 C -0.10 -1.22 4.92 -26.69 -0.13 -1.35 16 5 C -0.13 -1.84 5.94 -26.61 -0.16 -2.00 16 6 C 0.11 1.73 5.45 -3.71 -0.02 1.71 16 7 N -0.61 -11.39 2.92 -174.29 -0.51 -11.90 16 8 C 0.59 13.87 6.46 -12.51 -0.08 13.79 16 9 O -0.54 -14.54 15.53 5.27 0.08 -14.46 16 10 C -0.25 -6.12 4.77 -104.37 -0.50 -6.62 16 11 C -0.05 -1.07 7.63 -39.22 -0.30 -1.37 16 12 C -0.26 -5.39 10.03 -39.37 -0.39 -5.78 16 13 C -0.08 -1.66 10.01 -39.60 -0.40 -2.06 16 14 C -0.20 -5.07 8.00 -38.88 -0.31 -5.39 16 15 C 0.13 3.42 5.11 -106.54 -0.54 2.87 16 16 C -0.49 -13.48 7.69 -37.82 -0.29 -13.77 16 17 H 0.08 2.22 7.45 -52.49 -0.39 1.83 16 18 C 0.04 1.03 4.94 -17.30 -0.09 0.94 16 19 N -0.79 -21.53 12.74 55.56 0.71 -20.82 16 20 Si 1.07 22.61 29.99 -169.99 -5.10 17.51 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 C 0.09 1.38 5.33 -3.93 -0.02 1.36 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.38 5.18 9.04 45.56 0.41 5.59 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.32 7.61 -51.93 -0.40 0.92 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.76 5.22 -51.93 -0.27 1.49 16 35 H 0.09 1.75 7.56 -52.49 -0.40 1.36 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.10 2.65 7.15 -52.49 -0.38 2.28 16 39 H 0.30 8.38 6.80 -40.82 -0.28 8.11 16 40 H 0.09 1.55 6.99 -51.93 -0.36 1.18 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -31.06 329.85 -8.35 -39.41 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.08 Total: 11.98 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.99 Total: -17.67 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.20 Total: -32.72 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.35 Total: -23.48 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.10 Total: 17.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.06 -8.35 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601397585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.713 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds