Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.50161 * 2 1 4 4 C 1.53042 * 109.49497 * 120.06625 * 2 1 3 5 5 C 1.53047 * 109.53419 * 181.34966 * 4 2 1 6 6 C 1.53190 * 109.31289 * 298.62872 * 5 4 2 7 7 N 1.46933 * 108.77186 * 54.63665 * 6 5 4 8 8 C 1.34785 * 120.62680 * 126.37184 * 7 6 5 9 9 O 1.21606 * 119.99565 * 184.75406 * 8 7 6 10 10 C 1.47431 * 120.00158 * 4.74674 * 8 7 6 11 11 C 1.39225 * 120.27891 * 51.85585 * 10 8 7 12 12 C 1.38223 * 120.09087 * 180.27323 * 11 10 8 13 13 C 1.38821 * 120.67482 * 359.76615 * 12 11 10 14 14 C 1.37600 * 120.57198 * 359.95037 * 13 12 11 15 15 C 1.40706 * 119.88057 * 0.02562 * 14 13 12 16 16 C 1.40887 * 120.32822 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99823 * 215.11878 * 16 15 14 18 18 C 1.40270 * 120.00070 * 35.12207 * 16 15 14 19 19 N 1.30637 * 120.00183 * 23.19150 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 202.92206 * 18 16 15 21 21 H 1.48508 * 109.47100 * 180.27423 * 20 18 16 22 22 H 1.48498 * 109.47363 * 300.27262 * 20 18 16 23 23 H 1.48503 * 109.47204 * 60.27453 * 20 18 16 24 24 C 1.46923 * 118.74038 * 306.64168 * 7 6 5 25 25 H 1.09003 * 109.46657 * 299.94101 * 1 2 3 26 26 H 1.09001 * 109.47234 * 59.93425 * 1 2 3 27 27 H 1.08991 * 109.47426 * 179.97438 * 1 2 3 28 28 H 0.96702 * 113.99670 * 300.06573 * 3 2 1 29 29 H 1.08993 * 109.46148 * 61.33117 * 4 2 1 30 30 H 1.08994 * 109.45815 * 301.36138 * 4 2 1 31 31 H 1.08997 * 109.49577 * 178.68269 * 5 4 2 32 32 H 1.08996 * 109.52805 * 58.60054 * 5 4 2 33 33 H 1.09001 * 109.58743 * 294.85457 * 6 5 4 34 34 H 1.08994 * 109.70562 * 174.49480 * 6 5 4 35 35 H 1.08001 * 119.95890 * 359.97438 * 11 10 8 36 36 H 1.08003 * 119.66253 * 179.73449 * 12 11 10 37 37 H 1.08000 * 119.71841 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.06023 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99099 * 2.58751 * 19 18 16 40 40 H 1.09006 * 109.58357 * 173.14193 * 24 7 6 41 41 H 1.08995 * 109.58746 * 293.57190 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0407 -0.7228 1.2486 5 6 3.5708 -0.6940 1.2666 6 6 4.1059 -1.4256 0.0317 7 7 3.5052 -0.8284 -1.1689 8 6 4.2819 -0.3847 -2.1772 9 8 3.7791 0.1854 -3.1264 10 6 5.7410 -0.5903 -2.1292 11 6 6.2638 -1.8592 -1.8944 12 6 7.6323 -2.0466 -1.8446 13 6 8.5005 -0.9796 -2.0316 14 6 8.0139 0.2850 -2.2712 15 6 6.6248 0.5025 -2.3273 16 6 6.1163 1.7933 -2.5726 17 1 5.2020 2.1132 -2.0951 18 6 6.7975 2.6630 -3.4370 19 7 7.6047 2.1821 -4.3446 20 14 6.5445 4.5083 -3.2955 21 1 7.3670 5.2007 -4.3199 22 1 5.1109 4.8295 -3.5118 23 1 6.9546 4.9618 -1.9421 24 6 2.0422 -0.7187 -1.2469 25 1 -0.3633 0.5129 0.8906 26 1 -0.3634 0.5149 -0.8894 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7211 1.8655 -0.7646 29 1 1.6972 -1.7571 1.2355 30 1 1.6577 -0.2242 2.1389 31 1 3.9334 -1.1884 2.1678 32 1 3.9159 0.3398 1.2550 33 1 3.8386 -2.4808 0.0877 34 1 5.1903 -1.3253 -0.0138 35 1 5.5990 -2.6974 -1.7463 36 1 8.0303 -3.0331 -1.6578 37 1 9.5671 -1.1435 -1.9891 38 1 8.6968 1.1090 -2.4159 39 1 7.7044 1.2225 -4.4455 40 1 1.7653 -0.1497 -2.1345 41 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601397585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = -99.986779 kcal Electronic energy + Delta-G solvation = -24044.246574 eV Core-core repulsion = 20694.066340 eV Total energy + Delta-G solvation = -3350.180234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45421 -39.75857 -38.53931 -36.57694 -35.74697 -33.56714 -32.50952 -31.76514 -31.28230 -27.97465 -27.21256 -26.45790 -23.78373 -23.29176 -22.86236 -21.28157 -20.43947 -19.50975 -18.07990 -17.73813 -17.06069 -16.59032 -16.32212 -16.04806 -15.74267 -15.61859 -15.28655 -15.17333 -14.43079 -14.27703 -14.21422 -14.02858 -13.91820 -13.58338 -13.21995 -13.12860 -12.95911 -12.71654 -12.57883 -12.50947 -12.03005 -12.02386 -11.96407 -11.86616 -11.45547 -11.37226 -11.10528 -10.92472 -10.55204 -9.62043 -9.52300 -9.43807 -9.18299 -6.50098 0.53704 0.88220 1.42765 1.57170 1.72675 1.91668 2.24058 2.28514 2.66808 3.29141 3.44972 3.60284 3.81073 3.89050 4.06004 4.10722 4.22471 4.30982 4.40078 4.48103 4.54138 4.66074 4.72157 4.74424 4.79723 4.85903 4.90249 4.92912 5.08872 5.10929 5.19503 5.23772 5.37045 5.42236 5.58563 5.69424 5.73734 5.81242 5.90370 6.14491 6.30945 6.51234 6.72341 6.75618 6.84956 7.42909 8.01936 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.006688 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.621013 B = 4185.512049 C = 5378.162940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 O -0.575 6.575 4 C -0.099 4.099 5 C -0.128 4.128 6 C 0.103 3.897 7 N -0.605 5.605 8 C 0.578 3.422 9 O -0.591 6.591 10 C -0.263 4.263 11 C -0.049 4.049 12 C -0.236 4.236 13 C -0.074 4.074 14 C -0.224 4.224 15 C 0.101 3.899 16 C -0.531 4.531 17 H 0.051 0.949 18 C 0.004 3.996 19 N -0.815 5.815 20 Si 1.112 2.888 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.258 1.258 24 C 0.083 3.917 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.378 0.622 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.280 0.720 40 H 0.065 0.935 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -7.563 11.343 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 O -0.382 6.382 4 C -0.136 4.136 5 C -0.166 4.166 6 C -0.019 4.019 7 N -0.337 5.337 8 C 0.370 3.630 9 O -0.472 6.472 10 C -0.267 4.267 11 C -0.067 4.067 12 C -0.255 4.255 13 C -0.093 4.093 14 C -0.243 4.243 15 C 0.098 3.902 16 C -0.560 4.560 17 H 0.069 0.931 18 C -0.212 4.212 19 N -0.438 5.438 20 Si 0.929 3.071 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.182 1.182 24 C -0.039 4.039 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.226 0.774 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.458 -6.053 10.730 15.531 hybrid contribution -0.536 -1.021 -0.381 1.214 sum -9.994 -7.074 10.349 16.032 Atomic orbital electron populations 1.22348 0.92774 1.04225 1.03042 1.21720 0.94127 0.82134 0.95074 1.86528 1.78175 1.23951 1.49511 1.21565 0.94882 1.01134 0.96022 1.21811 0.96659 1.00286 0.97876 1.21998 0.99047 0.97460 0.83377 1.47958 1.06239 1.61314 1.18186 1.18515 0.87197 0.75821 0.81453 1.90624 1.75984 1.44006 1.36576 1.19772 0.91545 0.95201 1.20230 1.21016 0.95868 0.94293 0.95538 1.20783 0.92488 0.99041 1.13153 1.21127 0.99595 0.92344 0.96189 1.21128 0.94365 0.97271 1.11529 1.17763 0.91884 0.92302 0.88251 1.20436 1.09457 0.99145 1.26913 0.93079 1.28329 0.90680 1.11709 0.90448 1.70523 1.30004 1.17954 1.25329 0.83090 0.77782 0.67809 0.78433 1.18706 1.19613 1.18192 1.22320 0.80121 1.02176 0.99310 0.90890 0.92228 0.89315 0.77392 0.87753 0.90315 0.88237 0.94333 0.88884 0.90578 0.85599 0.84473 0.85620 0.89427 0.90830 0.91636 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.82 71.98 0.64 -2.22 16 2 C 0.11 2.71 1.00 -10.86 -0.01 2.70 16 3 O -0.57 -18.32 12.17 -148.98 -1.81 -20.13 16 4 C -0.10 -2.03 4.92 30.62 0.15 -1.88 16 5 C -0.13 -3.28 5.94 30.67 0.18 -3.10 16 6 C 0.10 3.02 5.45 86.36 0.47 3.49 16 7 N -0.60 -22.11 2.92 -823.59 -2.41 -24.51 16 8 C 0.58 28.11 6.46 86.66 0.56 28.67 16 9 O -0.59 -33.63 15.53 -4.05 -0.06 -33.69 16 10 C -0.26 -13.09 4.77 -19.70 -0.09 -13.18 16 11 C -0.05 -1.99 7.63 22.50 0.17 -1.81 16 12 C -0.24 -9.06 10.03 22.41 0.22 -8.84 16 13 C -0.07 -3.15 10.01 22.26 0.22 -2.93 16 14 C -0.22 -11.45 8.00 22.72 0.18 -11.27 16 15 C 0.10 5.64 5.11 -21.11 -0.11 5.54 16 16 C -0.53 -31.30 7.69 23.41 0.18 -31.12 16 17 H 0.05 3.17 7.45 -2.91 -0.02 3.15 16 18 C 0.00 0.22 4.94 85.36 0.42 0.65 16 19 N -0.81 -47.06 12.74 21.88 0.28 -46.78 16 20 Si 1.11 47.93 29.99 68.60 2.06 49.98 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 24 C 0.08 2.47 5.33 86.22 0.46 2.93 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.38 11.13 9.04 -74.06 -0.67 10.46 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.29 7.61 -2.39 -0.02 1.27 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 2.59 5.22 -2.39 -0.01 2.58 16 35 H 0.13 4.28 7.56 -2.91 -0.02 4.25 16 36 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.09 4.69 7.15 -2.91 -0.02 4.67 16 39 H 0.28 16.80 6.80 -92.70 -0.63 16.17 16 40 H 0.07 2.29 6.99 -2.38 -0.02 2.27 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.19 329.85 2.21 -71.98 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.51 Total: 35.53 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 3.65 Total: -32.39 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.13 Total: -71.29 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.88 Total: -53.82 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.06 Total: 49.98 kcal Total: -74.19 2.21 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601397585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.003 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds