Wall clock time and date at job start Tue Mar 31 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 112.85320 * 2 1 4 4 C 1.53781 * 113.61574 * 228.68882 * 2 1 3 5 5 H 1.09000 * 113.61208 * 105.38734 * 4 2 1 6 6 O 1.42897 * 113.61625 * 334.56830 * 4 2 1 7 7 C 1.53784 * 87.08230 * 220.02153 * 4 2 1 8 8 C 1.53774 * 87.08104 * 25.43140 * 7 4 2 9 9 H 1.09003 * 113.69030 * 89.12811 * 8 7 4 10 10 N 1.46501 * 113.61583 * 220.01866 * 8 7 4 11 11 C 1.34780 * 119.99913 * 252.49598 * 10 8 7 12 12 O 1.21612 * 120.00006 * 0.02562 * 11 10 8 13 13 C 1.47431 * 119.99833 * 179.97438 * 11 10 8 14 14 C 1.39225 * 120.28417 * 354.16307 * 13 11 10 15 15 C 1.38220 * 120.09408 * 179.72171 * 14 13 11 16 16 C 1.38832 * 120.67525 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.56935 * 0.02562 * 16 15 14 18 18 C 1.40706 * 119.88171 * 359.97438 * 17 16 15 19 19 C 1.40894 * 120.32820 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00071 * 145.80542 * 19 18 17 21 21 C 1.40273 * 119.99551 * 325.79912 * 19 18 17 22 22 N 1.30628 * 120.00249 * 350.76753 * 21 19 18 23 23 Si 1.86802 * 119.99732 * 170.76623 * 21 19 18 24 24 H 1.48499 * 109.47124 * 90.00200 * 23 21 19 25 25 H 1.48499 * 109.47092 * 209.99994 * 23 21 19 26 26 H 1.48495 * 109.47081 * 330.00271 * 23 21 19 27 27 H 1.08994 * 109.46908 * 288.80794 * 1 2 3 28 28 H 1.08997 * 109.46842 * 48.80548 * 1 2 3 29 29 H 1.08998 * 109.47078 * 168.80520 * 1 2 3 30 30 H 1.08996 * 109.46968 * 191.19577 * 3 2 1 31 31 H 1.09003 * 109.46243 * 311.19307 * 3 2 1 32 32 H 1.08995 * 109.46885 * 71.19069 * 3 2 1 33 33 H 0.96696 * 113.99998 * 179.97438 * 6 4 2 34 34 H 1.09001 * 113.61015 * 270.88482 * 7 4 2 35 35 H 1.09001 * 113.61187 * 139.98322 * 7 4 2 36 36 H 0.97001 * 120.00250 * 72.50132 * 10 8 7 37 37 H 1.08006 * 119.95112 * 359.69913 * 14 13 11 38 38 H 1.07995 * 119.66100 * 180.02562 * 15 14 13 39 39 H 1.07994 * 119.71165 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.05716 * 179.97438 * 17 16 15 41 41 H 0.96998 * 120.00006 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9302 -1.0584 5 1 2.5638 -0.4009 -1.9148 6 8 1.2920 -2.0114 -1.4370 7 6 3.1923 -1.3136 0.0014 8 6 2.1461 -0.9280 1.0603 9 1 1.4939 -1.7514 1.3518 10 7 2.7092 -0.2142 2.2090 11 6 2.8172 -0.8343 3.4008 12 8 2.4477 -1.9865 3.5225 13 6 3.3844 -0.1161 4.5567 14 6 3.9212 1.1585 4.3969 15 6 4.4468 1.8306 5.4843 16 6 4.4466 1.2482 6.7446 17 6 3.9231 -0.0102 6.9339 18 6 3.3820 -0.7157 5.8434 19 6 2.8431 -2.0045 6.0266 20 1 1.9935 -2.3229 5.4408 21 6 3.4102 -2.8741 6.9699 22 7 4.5400 -2.5642 7.5477 23 14 2.5496 -4.4754 7.3999 24 1 3.0228 -5.5510 6.4919 25 1 2.8594 -4.8420 8.8052 26 1 1.0826 -4.3062 7.2443 27 1 -0.3633 0.3313 0.9727 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1995 31 1 1.6415 2.0075 -0.7734 32 1 1.9600 1.8734 0.9727 33 1 1.6738 -2.5997 -2.1027 34 1 4.0711 -0.6687 0.0007 35 1 3.4443 -2.3741 0.0024 36 1 3.0042 0.7047 2.1120 37 1 3.9273 1.6226 3.4216 38 1 4.8610 2.8192 5.3524 39 1 4.8616 1.7871 7.5834 40 1 3.9277 -0.4555 7.9178 41 1 4.9319 -3.1654 8.2003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:37 Heat of formation + Delta-G solvation = -48.606311 kcal Electronic energy + Delta-G solvation = -23249.479260 eV Core-core repulsion = 19901.527050 eV Total energy + Delta-G solvation = -3347.952210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42725 -38.46047 -36.62775 -35.31846 -33.76047 -32.50683 -30.48496 -29.85714 -29.30232 -27.46798 -25.57040 -24.22404 -22.56916 -21.89292 -20.81468 -19.37789 -18.57928 -17.63018 -17.08195 -16.21197 -15.58082 -15.22329 -15.15829 -14.45353 -14.09303 -13.86070 -13.67537 -13.46632 -12.97957 -12.74990 -12.67027 -12.47948 -12.30713 -12.20282 -11.98170 -11.68004 -11.52709 -11.10475 -11.08205 -10.95127 -10.69135 -10.65216 -10.50325 -10.08278 -10.02066 -9.75548 -9.61719 -9.24045 -8.38840 -8.23574 -7.57034 -7.33347 -6.77665 -4.36197 2.38316 2.82995 3.11616 3.19408 3.25535 3.86891 3.99930 4.05054 4.15745 4.49144 4.61526 4.69905 4.97205 5.02133 5.21811 5.34812 5.60844 5.62331 5.65732 5.68749 5.85297 5.92352 5.96315 6.00627 6.08422 6.09515 6.28305 6.32675 6.35878 6.51011 6.69262 6.97391 7.12447 7.20137 7.28906 7.48206 7.56813 7.64055 7.90716 8.00772 8.19859 8.43758 8.69192 8.84719 8.92433 9.46150 10.17801 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.005105 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.337003 B = 5483.761394 C = 6729.684563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.133 4.133 4 C 0.088 3.912 5 H 0.068 0.932 6 O -0.546 6.546 7 C -0.186 4.186 8 C 0.148 3.852 9 H 0.114 0.886 10 N -0.738 5.738 11 C 0.564 3.436 12 O -0.537 6.537 13 C -0.262 4.262 14 C -0.058 4.058 15 C -0.246 4.246 16 C -0.096 4.096 17 C -0.148 4.148 18 C 0.146 3.854 19 C -0.415 4.415 20 H 0.105 0.895 21 C 0.069 3.931 22 N -0.794 5.794 23 Si 0.917 3.083 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.259 1.259 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.378 0.622 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 4.799 -13.055 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.028 3.972 5 H 0.085 0.915 6 O -0.351 6.351 7 C -0.225 4.225 8 C 0.042 3.958 9 H 0.132 0.868 10 N -0.392 5.392 11 C 0.358 3.642 12 O -0.416 6.416 13 C -0.267 4.267 14 C -0.077 4.077 15 C -0.266 4.266 16 C -0.115 4.115 17 C -0.167 4.167 18 C 0.141 3.859 19 C -0.444 4.444 20 H 0.123 0.877 21 C -0.149 4.149 22 N -0.419 5.419 23 Si 0.741 3.259 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.183 1.183 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.061 4.137 -12.328 13.359 hybrid contribution 0.560 -0.460 -0.270 0.774 sum -2.501 3.677 -12.598 13.360 Atomic orbital electron populations 1.21577 0.93325 1.02629 1.01288 1.22369 0.96737 0.94664 0.95073 1.21587 1.00660 0.94142 1.02638 1.22651 0.91027 0.88581 0.94901 0.91462 1.86455 1.44276 1.41206 1.63204 1.24136 0.98287 1.02633 0.97481 1.22260 0.94568 0.95132 0.83859 0.86783 1.46060 1.66626 1.16576 1.09923 1.18469 0.77560 0.86165 0.81978 1.90670 1.49505 1.17513 1.83869 1.19486 1.16278 0.97666 0.93227 1.20630 0.96928 0.93754 0.96348 1.20270 1.12224 1.00270 0.93789 1.20794 0.99138 0.95779 0.95778 1.21353 1.02987 0.93199 0.99143 1.17484 0.87247 0.92346 0.88776 1.20167 1.12827 0.96896 1.14474 0.87735 1.26116 0.94279 1.00833 0.93636 1.69716 1.14655 1.36710 1.20835 0.86158 0.80999 0.80987 0.77708 1.19329 1.20323 1.18304 0.92553 0.93034 0.91239 0.92081 0.91955 0.91293 0.77486 0.89355 0.90691 0.77277 0.89428 0.89156 0.89115 0.86498 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.04 37.16 0.34 -1.29 16 2 C -0.09 -1.08 1.35 -153.69 -0.21 -1.28 16 3 C -0.13 -1.36 8.05 37.16 0.30 -1.07 16 4 C 0.09 0.98 4.70 -25.92 -0.12 0.86 16 5 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 6 O -0.55 -6.11 12.12 -35.23 -0.43 -6.54 16 7 C -0.19 -2.48 7.36 -25.92 -0.19 -2.67 16 8 C 0.15 2.36 3.63 -67.12 -0.24 2.12 16 9 H 0.11 2.17 7.42 -51.93 -0.39 1.78 16 10 N -0.74 -13.30 5.17 -54.09 -0.28 -13.57 16 11 C 0.56 13.25 7.72 -12.52 -0.10 13.16 16 12 O -0.54 -14.41 13.19 5.27 0.07 -14.34 16 13 C -0.26 -6.45 5.92 -104.37 -0.62 -7.07 16 14 C -0.06 -1.24 9.51 -39.22 -0.37 -1.61 16 15 C -0.25 -5.25 10.03 -39.37 -0.39 -5.64 16 16 C -0.10 -2.18 10.01 -39.60 -0.40 -2.57 16 17 C -0.15 -3.78 8.62 -38.88 -0.34 -4.11 16 18 C 0.15 3.95 5.51 -106.54 -0.59 3.36 16 19 C -0.42 -11.57 7.68 -37.81 -0.29 -11.86 16 20 H 0.10 3.02 5.92 -52.49 -0.31 2.71 16 21 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 22 N -0.79 -20.82 11.14 55.56 0.62 -20.20 16 23 Si 0.92 20.00 29.57 -169.99 -5.03 14.97 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.94 6.96 -51.93 -0.36 0.57 16 30 H 0.06 0.58 7.35 -51.93 -0.38 0.19 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.74 7.10 -51.93 -0.37 0.37 16 33 H 0.38 2.54 9.12 45.56 0.42 2.95 16 34 H 0.09 1.10 7.66 -51.93 -0.40 0.70 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 6.11 4.72 -40.82 -0.19 5.92 16 37 H 0.09 1.54 6.44 -52.48 -0.34 1.21 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.12 3.05 6.60 -52.49 -0.35 2.71 16 41 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -31.11 331.27 -8.12 -39.23 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.76 Total: 13.42 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -3.31 Total: -17.96 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.34 Total: -33.78 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.36 Total: -20.88 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.11 -8.12 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.376 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds