Wall clock time and date at job start Tue Mar 31 2020 07:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 112.85320 * 2 1 4 4 C 1.53781 * 113.61574 * 228.68882 * 2 1 3 5 5 H 1.09000 * 113.61208 * 105.38734 * 4 2 1 6 6 O 1.42897 * 113.61625 * 334.56830 * 4 2 1 7 7 C 1.53784 * 87.08230 * 220.02153 * 4 2 1 8 8 C 1.53774 * 87.08104 * 25.43140 * 7 4 2 9 9 H 1.09003 * 113.69030 * 89.12811 * 8 7 4 10 10 N 1.46501 * 113.61583 * 220.01866 * 8 7 4 11 11 C 1.34780 * 119.99913 * 252.49598 * 10 8 7 12 12 O 1.21612 * 120.00006 * 0.02562 * 11 10 8 13 13 C 1.47431 * 119.99833 * 179.97438 * 11 10 8 14 14 C 1.39225 * 120.28417 * 354.16307 * 13 11 10 15 15 C 1.38220 * 120.09408 * 179.72171 * 14 13 11 16 16 C 1.38832 * 120.67525 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.56935 * 0.02562 * 16 15 14 18 18 C 1.40706 * 119.88171 * 359.97438 * 17 16 15 19 19 C 1.40894 * 120.32820 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00071 * 145.80542 * 19 18 17 21 21 C 1.40273 * 119.99551 * 325.79912 * 19 18 17 22 22 N 1.30628 * 120.00249 * 350.76753 * 21 19 18 23 23 Si 1.86802 * 119.99732 * 170.76623 * 21 19 18 24 24 H 1.48499 * 109.47124 * 90.00200 * 23 21 19 25 25 H 1.48499 * 109.47092 * 209.99994 * 23 21 19 26 26 H 1.48495 * 109.47081 * 330.00271 * 23 21 19 27 27 H 1.08994 * 109.46908 * 288.80794 * 1 2 3 28 28 H 1.08997 * 109.46842 * 48.80548 * 1 2 3 29 29 H 1.08998 * 109.47078 * 168.80520 * 1 2 3 30 30 H 1.08996 * 109.46968 * 191.19577 * 3 2 1 31 31 H 1.09003 * 109.46243 * 311.19307 * 3 2 1 32 32 H 1.08995 * 109.46885 * 71.19069 * 3 2 1 33 33 H 0.96696 * 113.99998 * 179.97438 * 6 4 2 34 34 H 1.09001 * 113.61015 * 270.88482 * 7 4 2 35 35 H 1.09001 * 113.61187 * 139.98322 * 7 4 2 36 36 H 0.97001 * 120.00250 * 72.50132 * 10 8 7 37 37 H 1.08006 * 119.95112 * 359.69913 * 14 13 11 38 38 H 1.07995 * 119.66100 * 180.02562 * 15 14 13 39 39 H 1.07994 * 119.71165 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.05716 * 179.97438 * 17 16 15 41 41 H 0.96998 * 120.00006 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9302 -1.0584 5 1 2.5638 -0.4009 -1.9148 6 8 1.2920 -2.0114 -1.4370 7 6 3.1923 -1.3136 0.0014 8 6 2.1461 -0.9280 1.0603 9 1 1.4939 -1.7514 1.3518 10 7 2.7092 -0.2142 2.2090 11 6 2.8172 -0.8343 3.4008 12 8 2.4477 -1.9865 3.5225 13 6 3.3844 -0.1161 4.5567 14 6 3.9212 1.1585 4.3969 15 6 4.4468 1.8306 5.4843 16 6 4.4466 1.2482 6.7446 17 6 3.9231 -0.0102 6.9339 18 6 3.3820 -0.7157 5.8434 19 6 2.8431 -2.0045 6.0266 20 1 1.9935 -2.3229 5.4408 21 6 3.4102 -2.8741 6.9699 22 7 4.5400 -2.5642 7.5477 23 14 2.5496 -4.4754 7.3999 24 1 3.0228 -5.5510 6.4919 25 1 2.8594 -4.8420 8.8052 26 1 1.0826 -4.3062 7.2443 27 1 -0.3633 0.3313 0.9727 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1995 31 1 1.6415 2.0075 -0.7734 32 1 1.9600 1.8734 0.9727 33 1 1.6738 -2.5997 -2.1027 34 1 4.0711 -0.6687 0.0007 35 1 3.4443 -2.3741 0.0024 36 1 3.0042 0.7047 2.1120 37 1 3.9273 1.6226 3.4216 38 1 4.8610 2.8192 5.3524 39 1 4.8616 1.7871 7.5834 40 1 3.9277 -0.4555 7.9178 41 1 4.9319 -3.1654 8.2003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:36 Heat of formation + Delta-G solvation = -70.182294 kcal Electronic energy + Delta-G solvation = -23250.414865 eV Core-core repulsion = 19901.527050 eV Total energy + Delta-G solvation = -3348.887815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61855 -40.14222 -38.40588 -36.39157 -35.61957 -34.07624 -31.86105 -31.53499 -30.93771 -28.35257 -27.42507 -25.62642 -23.71650 -23.45252 -22.62480 -21.09385 -19.82859 -19.20750 -18.33361 -17.78531 -17.13962 -16.82173 -16.18214 -16.04367 -15.79955 -15.41370 -15.15305 -14.76836 -14.50755 -14.46636 -14.15322 -13.60762 -13.48997 -13.32520 -13.23561 -12.99158 -12.89792 -12.87824 -12.67464 -12.51595 -12.30216 -11.98173 -11.88359 -11.82734 -11.48828 -11.15725 -11.02865 -10.69913 -10.22291 -9.81337 -9.38090 -9.22336 -8.68414 -6.36616 0.52235 1.00921 1.30791 1.44136 1.47796 2.19482 2.34782 2.52333 2.78020 3.05692 3.44149 3.66254 3.71497 3.89239 4.07234 4.25429 4.31249 4.36032 4.51969 4.56566 4.62211 4.73696 4.78166 4.86247 4.94949 4.99237 5.04510 5.09920 5.13862 5.16825 5.24601 5.34165 5.39382 5.51705 5.61915 5.76503 5.83110 6.06447 6.10785 6.34642 6.65236 6.81074 6.92634 6.93628 7.02696 7.69647 8.29283 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.005105 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.337003 B = 5483.761394 C = 6729.684563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.133 4.133 4 C 0.105 3.895 5 H 0.106 0.894 6 O -0.565 6.565 7 C -0.182 4.182 8 C 0.123 3.877 9 H 0.072 0.928 10 N -0.715 5.715 11 C 0.557 3.443 12 O -0.583 6.583 13 C -0.281 4.281 14 C -0.054 4.054 15 C -0.234 4.234 16 C -0.092 4.092 17 C -0.177 4.177 18 C 0.114 3.886 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.032 3.968 22 N -0.823 5.823 23 Si 0.977 3.023 24 H -0.272 1.272 25 H -0.254 1.254 26 H -0.265 1.265 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.406 0.594 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 7.437 -15.330 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C -0.190 4.190 4 C 0.045 3.955 5 H 0.124 0.876 6 O -0.374 6.374 7 C -0.221 4.221 8 C 0.018 3.982 9 H 0.090 0.910 10 N -0.368 5.368 11 C 0.350 3.650 12 O -0.465 6.465 13 C -0.286 4.286 14 C -0.073 4.073 15 C -0.253 4.253 16 C -0.111 4.111 17 C -0.196 4.196 18 C 0.110 3.890 19 C -0.487 4.487 20 H 0.096 0.904 21 C -0.182 4.182 22 N -0.450 5.450 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.178 1.178 26 H -0.189 1.189 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.138 6.816 -14.647 16.296 hybrid contribution 0.288 -1.108 0.305 1.185 sum -1.850 5.708 -14.342 15.546 Atomic orbital electron populations 1.21559 0.93716 1.02177 1.01282 1.22413 0.96482 0.95762 0.93341 1.21639 1.01710 0.92379 1.03255 1.22591 0.89467 0.88197 0.95255 0.87645 1.86427 1.44897 1.41890 1.64162 1.24152 0.98750 1.02115 0.97130 1.22500 0.96047 0.95619 0.84031 0.91030 1.45800 1.65241 1.16968 1.08835 1.18557 0.77309 0.85719 0.83389 1.90646 1.51491 1.19553 1.84803 1.19877 1.16485 0.99219 0.92972 1.21057 0.95223 0.92276 0.98733 1.20811 1.10125 1.01670 0.92702 1.21192 0.97518 0.94573 0.97781 1.21289 1.05345 0.94823 0.98164 1.17873 0.88054 0.92663 0.90411 1.20096 1.13747 0.98495 1.16380 0.90413 1.26759 0.94751 1.03476 0.93259 1.69734 1.15440 1.38067 1.21724 0.85291 0.79397 0.77029 0.78442 1.19707 1.17753 1.18947 0.94010 0.90554 0.92936 0.90591 0.89514 0.91904 0.75210 0.87724 0.92212 0.75527 0.84991 0.84730 0.86137 0.88260 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.04 71.98 0.65 -2.43 16 2 C -0.08 -1.77 1.35 -51.65 -0.07 -1.84 16 3 C -0.13 -2.17 8.05 71.98 0.58 -1.59 16 4 C 0.10 2.02 4.70 31.12 0.15 2.17 16 5 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 6 O -0.57 -11.70 12.12 -148.98 -1.81 -13.50 16 7 C -0.18 -4.58 7.36 31.12 0.23 -4.35 16 8 C 0.12 3.94 3.63 45.52 0.17 4.11 16 9 H 0.07 2.91 7.42 -2.39 -0.02 2.89 16 10 N -0.71 -25.46 5.17 -443.28 -2.29 -27.76 16 11 C 0.56 27.05 7.72 86.66 0.67 27.71 16 12 O -0.58 -33.48 13.19 -4.07 -0.05 -33.54 16 13 C -0.28 -14.03 5.92 -19.70 -0.12 -14.15 16 14 C -0.05 -2.18 9.51 22.50 0.21 -1.97 16 15 C -0.23 -9.11 10.03 22.41 0.22 -8.88 16 16 C -0.09 -4.02 10.01 22.26 0.22 -3.80 16 17 C -0.18 -9.28 8.62 22.72 0.20 -9.09 16 18 C 0.11 6.44 5.51 -21.11 -0.12 6.32 16 19 C -0.46 -27.30 7.68 23.42 0.18 -27.12 16 20 H 0.08 4.91 5.92 -2.91 -0.02 4.90 16 21 C 0.03 1.77 5.25 85.37 0.45 2.21 16 22 N -0.82 -45.11 11.14 21.88 0.24 -44.86 16 23 Si 0.98 43.19 29.57 68.60 2.03 45.22 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.41 6.96 -2.39 -0.02 1.39 16 30 H 0.08 1.04 7.35 -2.39 -0.02 1.02 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.11 7.10 -2.39 -0.02 1.10 16 33 H 0.40 4.51 9.12 -74.06 -0.68 3.84 16 34 H 0.10 2.29 7.66 -2.39 -0.02 2.27 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 11.71 4.72 -92.71 -0.44 11.27 16 37 H 0.13 4.04 6.44 -2.91 -0.02 4.02 16 38 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.10 5.45 6.60 -2.91 -0.02 5.43 16 41 H 0.29 14.27 8.29 -92.71 -0.77 13.51 16 Total: -1.00 -73.95 331.27 1.69 -72.25 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.05 Total: 34.87 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 3.62 Total: -32.69 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -2.05 Total: -72.62 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -1.86 Total: -47.04 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.95 1.69 -72.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.071 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds