Wall clock time and date at job start Tue Mar 31 2020 07:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 112.90758 * 2 1 4 4 C 1.53781 * 113.61288 * 228.74389 * 2 1 3 5 5 H 1.09001 * 113.61056 * 25.43879 * 4 2 1 6 6 O 1.42901 * 113.61245 * 156.33553 * 4 2 1 7 7 C 1.53778 * 87.08288 * 270.88780 * 4 2 1 8 8 C 1.53780 * 87.08173 * 334.56661 * 7 4 2 9 9 H 1.09002 * 113.61808 * 270.80154 * 8 7 4 10 10 N 1.46508 * 113.61624 * 139.97942 * 8 7 4 11 11 C 1.34776 * 119.99607 * 104.50612 * 10 8 7 12 12 O 1.21613 * 120.00410 * 0.02562 * 11 10 8 13 13 C 1.47427 * 119.99796 * 180.02562 * 11 10 8 14 14 C 1.39231 * 120.28428 * 355.67676 * 13 11 10 15 15 C 1.38216 * 120.09449 * 180.02562 * 14 13 11 16 16 C 1.38829 * 120.67405 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.57419 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87999 * 359.97438 * 17 16 15 19 19 C 1.40892 * 120.32788 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00051 * 215.48225 * 19 18 17 21 21 C 1.40274 * 119.99568 * 35.48010 * 19 18 17 22 22 N 1.30627 * 120.00336 * 9.14565 * 21 19 18 23 23 Si 1.86801 * 119.99513 * 189.14056 * 21 19 18 24 24 H 1.48497 * 109.47478 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 120.00299 * 23 21 19 26 26 H 1.48500 * 109.47260 * 240.00195 * 23 21 19 27 27 H 1.09002 * 109.46799 * 288.75380 * 1 2 3 28 28 H 1.08999 * 109.46930 * 48.75018 * 1 2 3 29 29 H 1.08994 * 109.47335 * 168.75347 * 1 2 3 30 30 H 1.08998 * 109.47171 * 191.25342 * 3 2 1 31 31 H 1.08996 * 109.47374 * 311.24919 * 3 2 1 32 32 H 1.08997 * 109.47361 * 71.25173 * 3 2 1 33 33 H 0.96702 * 113.99955 * 177.00392 * 6 4 2 34 34 H 1.09004 * 113.61302 * 220.02218 * 7 4 2 35 35 H 1.08999 * 113.69323 * 89.12897 * 7 4 2 36 36 H 0.97001 * 120.00109 * 284.51430 * 10 8 7 37 37 H 1.07997 * 119.95042 * 0.02562 * 14 13 11 38 38 H 1.08001 * 119.66452 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.71202 * 180.02562 * 16 15 14 40 40 H 1.07998 * 120.06176 * 179.71973 * 17 16 15 41 41 H 0.97001 * 119.99597 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9292 -1.0593 5 1 1.4945 -1.1087 -1.9145 6 8 3.4742 -0.5631 -1.4390 7 6 2.0929 -2.0426 0.0001 8 6 2.1460 -0.9291 1.0594 9 1 3.1591 -0.6509 1.3501 10 7 1.2703 -1.1703 2.2089 11 6 1.7955 -1.5704 3.3839 12 8 2.9963 -1.7308 3.4900 13 6 0.9143 -1.8137 4.5404 14 6 -0.4493 -1.5463 4.4527 15 6 -1.2718 -1.7753 5.5396 16 6 -0.7534 -2.2719 6.7279 17 6 0.5900 -2.5449 6.8454 18 6 1.4490 -2.3206 5.7537 19 6 2.8263 -2.5963 5.8638 20 1 3.5450 -1.9671 5.3598 21 6 3.2641 -3.6880 6.6281 22 7 2.3990 -4.5513 7.0893 23 14 5.0843 -3.9073 6.9863 24 1 5.8496 -2.8018 6.3559 25 1 5.3057 -3.8876 8.4546 26 1 5.5445 -5.2065 6.4337 27 1 -0.3633 0.3304 0.9731 28 1 -0.3633 0.6776 -0.7726 29 1 -0.3634 -1.0079 -0.2004 30 1 3.1954 1.3517 -0.2005 31 1 1.6429 2.0077 -0.7726 32 1 1.9628 1.8726 0.9731 33 1 3.8839 -1.1698 -2.0708 34 1 2.9716 -2.6875 0.0001 35 1 1.1573 -2.6019 0.0011 36 1 0.3125 -1.0422 2.1243 37 1 -0.8649 -1.1593 3.5341 38 1 -2.3286 -1.5658 5.4638 39 1 -1.4104 -2.4455 7.5674 40 1 0.9852 -2.9267 7.7751 41 1 2.7018 -5.3060 7.6181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:46 Heat of formation + Delta-G solvation = -48.364377 kcal Electronic energy + Delta-G solvation = -23257.118316 eV Core-core repulsion = 19909.176597 eV Total energy + Delta-G solvation = -3347.941719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43069 -38.46166 -36.62775 -35.31273 -33.75522 -32.50792 -30.48735 -29.85607 -29.31006 -27.47841 -25.57035 -24.22165 -22.57244 -21.89235 -20.82011 -19.38390 -18.58024 -17.62168 -17.05880 -16.21768 -15.60157 -15.20492 -15.16590 -14.44730 -14.10143 -13.87635 -13.64872 -13.43976 -13.07595 -12.74981 -12.67346 -12.47546 -12.28646 -12.20609 -11.98399 -11.69158 -11.52557 -11.13610 -11.10708 -10.93882 -10.67679 -10.62119 -10.49193 -10.08907 -10.03425 -9.75244 -9.60623 -9.25713 -8.33861 -8.24626 -7.57743 -7.32043 -6.78151 -4.37264 2.37255 2.81288 3.12305 3.21929 3.23850 3.86983 4.00477 4.05650 4.15606 4.48089 4.61794 4.70355 4.97221 5.02202 5.21390 5.35825 5.59704 5.61463 5.65272 5.69492 5.84600 5.92249 5.95451 6.00366 6.09006 6.10061 6.27651 6.31819 6.35249 6.50591 6.68499 6.96178 7.11826 7.19483 7.29488 7.47641 7.57127 7.63140 7.89672 8.01438 8.19741 8.43778 8.70677 8.85586 8.93164 9.47209 10.17938 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.005141 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.309614 B = 5444.993734 C = 6722.148784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.131 4.131 4 C 0.088 3.912 5 H 0.067 0.933 6 O -0.547 6.547 7 C -0.186 4.186 8 C 0.149 3.851 9 H 0.113 0.887 10 N -0.738 5.738 11 C 0.564 3.436 12 O -0.538 6.538 13 C -0.261 4.261 14 C -0.058 4.058 15 C -0.244 4.244 16 C -0.097 4.097 17 C -0.146 4.146 18 C 0.146 3.854 19 C -0.421 4.421 20 H 0.111 0.889 21 C 0.069 3.931 22 N -0.794 5.794 23 Si 0.915 3.085 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.378 0.622 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.391 0.609 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 5.102 -12.507 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.188 4.188 4 C 0.028 3.972 5 H 0.085 0.915 6 O -0.352 6.352 7 C -0.226 4.226 8 C 0.043 3.957 9 H 0.131 0.869 10 N -0.392 5.392 11 C 0.359 3.641 12 O -0.417 6.417 13 C -0.265 4.265 14 C -0.077 4.077 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.165 4.165 18 C 0.142 3.858 19 C -0.449 4.449 20 H 0.129 0.871 21 C -0.149 4.149 22 N -0.420 5.420 23 Si 0.739 3.261 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.226 0.774 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.285 5.260 -11.858 13.172 hybrid contribution 0.169 -0.852 -0.265 0.908 sum -2.117 4.408 -12.124 13.073 Atomic orbital electron populations 1.21588 0.92631 1.02239 1.02577 1.22345 0.95620 0.95730 0.95036 1.21577 1.01745 0.94224 1.01272 1.22656 0.84133 0.95520 0.94856 0.91470 1.86449 1.28481 1.53873 1.66393 1.24141 1.03055 0.97942 0.97440 1.22248 0.95965 0.93659 0.83871 0.86942 1.46048 1.09990 1.72155 1.11025 1.18446 0.88080 0.75635 0.81985 1.90649 1.15731 1.51654 1.83651 1.19495 0.92335 1.20186 0.94532 1.20634 0.92973 0.97699 0.96388 1.20276 0.97595 1.13144 0.95372 1.20794 0.95452 0.98961 0.96343 1.21332 0.92523 1.03603 0.99047 1.17500 0.93404 0.86430 0.88450 1.20343 0.93384 1.09065 1.22108 0.87148 1.26145 1.00514 0.95331 0.92939 1.69729 1.36571 1.09782 1.25902 0.86131 0.82136 0.79370 0.78415 1.17969 1.19890 1.19971 0.91361 0.91921 0.92007 0.91226 0.93004 0.92575 0.77448 0.90682 0.89314 0.77263 0.89416 0.89126 0.89100 0.86684 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.08 37.16 0.30 -1.06 16 2 C -0.09 -1.06 1.35 -153.69 -0.21 -1.27 16 3 C -0.13 -1.61 9.04 37.16 0.34 -1.27 16 4 C 0.09 0.99 4.69 -25.92 -0.12 0.87 16 5 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 6 O -0.55 -6.14 12.12 -35.23 -0.43 -6.57 16 7 C -0.19 -2.52 7.36 -25.92 -0.19 -2.71 16 8 C 0.15 2.38 3.59 -67.11 -0.24 2.14 16 9 H 0.11 2.12 7.49 -51.93 -0.39 1.73 16 10 N -0.74 -13.33 5.21 -54.08 -0.28 -13.61 16 11 C 0.56 13.25 7.73 -12.52 -0.10 13.16 16 12 O -0.54 -14.39 13.16 5.27 0.07 -14.33 16 13 C -0.26 -6.42 5.92 -104.37 -0.62 -7.04 16 14 C -0.06 -1.24 9.52 -39.22 -0.37 -1.62 16 15 C -0.24 -5.20 10.03 -39.37 -0.39 -5.59 16 16 C -0.10 -2.19 10.01 -39.60 -0.40 -2.58 16 17 C -0.15 -3.73 8.61 -38.88 -0.33 -4.06 16 18 C 0.15 3.96 5.49 -106.54 -0.58 3.38 16 19 C -0.42 -11.71 7.77 -37.81 -0.29 -12.00 16 20 H 0.11 3.21 5.74 -52.49 -0.30 2.91 16 21 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 22 N -0.79 -20.81 11.24 55.56 0.62 -20.19 16 23 Si 0.92 19.94 29.57 -169.99 -5.03 14.91 16 24 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.07 0.72 7.04 -51.93 -0.37 0.36 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 30 H 0.07 0.93 6.96 -51.93 -0.36 0.57 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.38 2.60 9.12 45.56 0.42 3.01 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 36 H 0.39 6.14 4.63 -40.82 -0.19 5.95 16 37 H 0.09 1.54 6.42 -52.49 -0.34 1.21 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 40 H 0.12 3.00 6.71 -52.49 -0.35 2.65 16 41 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -31.05 331.25 -8.11 -39.16 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -4.75 Total: 13.61 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.31 Total: -17.98 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.34 Total: -33.80 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.36 Total: -20.89 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.05 -8.11 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.204 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds