Wall clock time and date at job start Tue Mar 31 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 112.90758 * 2 1 4 4 C 1.53781 * 113.61288 * 228.74389 * 2 1 3 5 5 H 1.09001 * 113.61056 * 25.43879 * 4 2 1 6 6 O 1.42901 * 113.61245 * 156.33553 * 4 2 1 7 7 C 1.53778 * 87.08288 * 270.88780 * 4 2 1 8 8 C 1.53780 * 87.08173 * 334.56661 * 7 4 2 9 9 H 1.09002 * 113.61808 * 270.80154 * 8 7 4 10 10 N 1.46508 * 113.61624 * 139.97942 * 8 7 4 11 11 C 1.34776 * 119.99607 * 104.50612 * 10 8 7 12 12 O 1.21613 * 120.00410 * 0.02562 * 11 10 8 13 13 C 1.47427 * 119.99796 * 180.02562 * 11 10 8 14 14 C 1.39231 * 120.28428 * 355.67676 * 13 11 10 15 15 C 1.38216 * 120.09449 * 180.02562 * 14 13 11 16 16 C 1.38829 * 120.67405 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.57419 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87999 * 359.97438 * 17 16 15 19 19 C 1.40892 * 120.32788 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00051 * 215.48225 * 19 18 17 21 21 C 1.40274 * 119.99568 * 35.48010 * 19 18 17 22 22 N 1.30627 * 120.00336 * 9.14565 * 21 19 18 23 23 Si 1.86801 * 119.99513 * 189.14056 * 21 19 18 24 24 H 1.48497 * 109.47478 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 120.00299 * 23 21 19 26 26 H 1.48500 * 109.47260 * 240.00195 * 23 21 19 27 27 H 1.09002 * 109.46799 * 288.75380 * 1 2 3 28 28 H 1.08999 * 109.46930 * 48.75018 * 1 2 3 29 29 H 1.08994 * 109.47335 * 168.75347 * 1 2 3 30 30 H 1.08998 * 109.47171 * 191.25342 * 3 2 1 31 31 H 1.08996 * 109.47374 * 311.24919 * 3 2 1 32 32 H 1.08997 * 109.47361 * 71.25173 * 3 2 1 33 33 H 0.96702 * 113.99955 * 177.00392 * 6 4 2 34 34 H 1.09004 * 113.61302 * 220.02218 * 7 4 2 35 35 H 1.08999 * 113.69323 * 89.12897 * 7 4 2 36 36 H 0.97001 * 120.00109 * 284.51430 * 10 8 7 37 37 H 1.07997 * 119.95042 * 0.02562 * 14 13 11 38 38 H 1.08001 * 119.66452 * 180.02562 * 15 14 13 39 39 H 1.08005 * 119.71202 * 180.02562 * 16 15 14 40 40 H 1.07998 * 120.06176 * 179.71973 * 17 16 15 41 41 H 0.97001 * 119.99597 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9292 -1.0593 5 1 1.4945 -1.1087 -1.9145 6 8 3.4742 -0.5631 -1.4390 7 6 2.0929 -2.0426 0.0001 8 6 2.1460 -0.9291 1.0594 9 1 3.1591 -0.6509 1.3501 10 7 1.2703 -1.1703 2.2089 11 6 1.7955 -1.5704 3.3839 12 8 2.9963 -1.7308 3.4900 13 6 0.9143 -1.8137 4.5404 14 6 -0.4493 -1.5463 4.4527 15 6 -1.2718 -1.7753 5.5396 16 6 -0.7534 -2.2719 6.7279 17 6 0.5900 -2.5449 6.8454 18 6 1.4490 -2.3206 5.7537 19 6 2.8263 -2.5963 5.8638 20 1 3.5450 -1.9671 5.3598 21 6 3.2641 -3.6880 6.6281 22 7 2.3990 -4.5513 7.0893 23 14 5.0843 -3.9073 6.9863 24 1 5.8496 -2.8018 6.3559 25 1 5.3057 -3.8876 8.4546 26 1 5.5445 -5.2065 6.4337 27 1 -0.3633 0.3304 0.9731 28 1 -0.3633 0.6776 -0.7726 29 1 -0.3634 -1.0079 -0.2004 30 1 3.1954 1.3517 -0.2005 31 1 1.6429 2.0077 -0.7726 32 1 1.9628 1.8726 0.9731 33 1 3.8839 -1.1698 -2.0708 34 1 2.9716 -2.6875 0.0001 35 1 1.1573 -2.6019 0.0011 36 1 0.3125 -1.0422 2.1243 37 1 -0.8649 -1.1593 3.5341 38 1 -2.3286 -1.5658 5.4638 39 1 -1.4104 -2.4455 7.5674 40 1 0.9852 -2.9267 7.7751 41 1 2.7018 -5.3060 7.6181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:45 Heat of formation + Delta-G solvation = -69.858342 kcal Electronic energy + Delta-G solvation = -23258.050364 eV Core-core repulsion = 19909.176597 eV Total energy + Delta-G solvation = -3348.873767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62573 -40.14484 -38.40493 -36.39165 -35.61174 -34.07804 -31.85863 -31.54188 -30.93979 -28.35531 -27.42231 -25.62894 -23.72779 -23.45177 -22.62821 -21.10102 -19.83172 -19.20884 -18.30807 -17.78382 -17.13509 -16.83467 -16.19211 -16.03840 -15.81516 -15.40300 -15.14296 -14.78149 -14.52765 -14.49661 -14.15384 -13.58870 -13.51366 -13.32352 -13.23733 -12.98822 -12.92158 -12.88231 -12.67580 -12.44758 -12.33256 -11.98443 -11.89757 -11.81147 -11.49070 -11.15117 -11.03936 -10.70401 -10.18055 -9.82131 -9.38597 -9.21211 -8.68635 -6.37538 0.51506 1.00160 1.31146 1.45342 1.47492 2.20354 2.34954 2.52147 2.78549 3.05019 3.42569 3.65687 3.70596 3.88321 4.06817 4.24871 4.31156 4.35642 4.51916 4.56095 4.61310 4.73525 4.78235 4.86128 4.94640 4.99226 5.04154 5.09319 5.13806 5.16403 5.24734 5.33866 5.39133 5.52016 5.61889 5.76089 5.82546 6.06240 6.11535 6.35244 6.66541 6.81493 6.92040 6.92886 7.03273 7.70223 8.29733 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.005141 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.309614 B = 5444.993734 C = 6722.148784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.130 4.130 4 C 0.105 3.895 5 H 0.105 0.895 6 O -0.565 6.565 7 C -0.185 4.185 8 C 0.125 3.875 9 H 0.072 0.928 10 N -0.715 5.715 11 C 0.557 3.443 12 O -0.583 6.583 13 C -0.280 4.280 14 C -0.055 4.055 15 C -0.233 4.233 16 C -0.092 4.092 17 C -0.175 4.175 18 C 0.115 3.885 19 C -0.463 4.463 20 H 0.083 0.917 21 C 0.032 3.968 22 N -0.824 5.824 23 Si 0.976 3.024 24 H -0.272 1.272 25 H -0.253 1.253 26 H -0.266 1.266 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.397 0.603 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.406 0.594 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 5.677 -14.618 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C -0.187 4.187 4 C 0.045 3.955 5 H 0.122 0.878 6 O -0.373 6.373 7 C -0.224 4.224 8 C 0.019 3.981 9 H 0.090 0.910 10 N -0.369 5.369 11 C 0.350 3.650 12 O -0.465 6.465 13 C -0.284 4.284 14 C -0.073 4.073 15 C -0.251 4.251 16 C -0.111 4.111 17 C -0.194 4.194 18 C 0.111 3.889 19 C -0.492 4.492 20 H 0.101 0.899 21 C -0.182 4.182 22 N -0.450 5.450 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.177 1.177 26 H -0.191 1.191 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.245 0.755 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.069 5.841 -14.010 16.003 hybrid contribution 0.870 -0.924 0.281 1.300 sum -4.199 4.917 -13.728 15.175 Atomic orbital electron populations 1.21645 0.90308 1.03733 1.03345 1.22380 0.97291 0.94956 0.93140 1.21560 1.01044 0.94690 1.01420 1.22598 0.84653 0.93093 0.95166 0.87791 1.86420 1.28902 1.54775 1.67212 1.24161 1.03027 0.97807 0.97382 1.22488 0.94332 0.97221 0.84010 0.91001 1.45799 1.10925 1.70208 1.09981 1.18544 0.87445 0.75623 0.83355 1.90628 1.17582 1.53743 1.84566 1.19889 0.94284 1.19911 0.94366 1.21060 0.91400 0.96447 0.98427 1.20818 0.99708 1.10483 0.94139 1.21192 0.94488 0.97292 0.98131 1.21266 0.94039 1.05873 0.98257 1.17882 0.93721 0.87378 0.89927 1.20248 0.93799 1.10662 1.24537 0.89916 1.26779 1.04409 0.94550 0.92510 1.69744 1.38030 1.10349 1.26924 0.85248 0.77085 0.78748 0.79133 1.19667 1.17687 1.19067 0.91736 0.89423 0.90798 0.92913 0.90540 0.93764 0.75235 0.92305 0.87982 0.75543 0.85013 0.84689 0.86106 0.88465 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.08 71.98 0.58 -1.59 16 2 C -0.08 -1.71 1.35 -51.65 -0.07 -1.78 16 3 C -0.13 -3.00 9.04 71.98 0.65 -2.35 16 4 C 0.10 2.06 4.69 31.12 0.15 2.21 16 5 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 6 O -0.56 -11.77 12.12 -148.98 -1.81 -13.58 16 7 C -0.18 -4.78 7.36 31.12 0.23 -4.55 16 8 C 0.12 4.00 3.59 45.52 0.16 4.16 16 9 H 0.07 2.90 7.49 -2.39 -0.02 2.88 16 10 N -0.72 -25.56 5.21 -443.27 -2.31 -27.87 16 11 C 0.56 27.04 7.73 86.66 0.67 27.71 16 12 O -0.58 -33.40 13.16 -4.07 -0.05 -33.45 16 13 C -0.28 -13.97 5.92 -19.70 -0.12 -14.08 16 14 C -0.05 -2.20 9.52 22.50 0.21 -1.99 16 15 C -0.23 -9.03 10.03 22.41 0.22 -8.80 16 16 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 17 C -0.17 -9.17 8.61 22.72 0.20 -8.97 16 18 C 0.11 6.48 5.49 -21.11 -0.12 6.36 16 19 C -0.46 -27.58 7.77 23.42 0.18 -27.40 16 20 H 0.08 5.25 5.74 -2.91 -0.02 5.23 16 21 C 0.03 1.76 5.25 85.37 0.45 2.20 16 22 N -0.82 -45.00 11.24 21.88 0.25 -44.75 16 23 Si 0.98 43.06 29.57 68.60 2.03 45.09 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H 0.06 1.11 7.04 -2.39 -0.02 1.09 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.05 7.34 -2.39 -0.02 1.04 16 30 H 0.05 1.39 6.96 -2.39 -0.02 1.37 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.40 4.70 9.12 -74.06 -0.68 4.02 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 2.37 7.66 -2.39 -0.02 2.35 16 36 H 0.41 11.77 4.63 -92.71 -0.43 11.34 16 37 H 0.13 4.04 6.42 -2.91 -0.02 4.02 16 38 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.10 5.32 6.71 -2.91 -0.02 5.30 16 41 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 Total: -1.00 -73.60 331.25 1.69 -71.90 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.04 Total: 35.34 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 3.63 Total: -32.68 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.06 Total: -72.62 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.86 Total: -47.03 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.60 1.69 -71.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.044 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds