Wall clock time and date at job start Tue Mar 31 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00185 * 2 1 4 4 C 1.52997 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.53004 * 112.94591 * 309.66944 * 4 3 2 6 6 C 1.53948 * 113.74157 * 81.25943 * 4 3 2 7 7 N 1.47814 * 86.03623 * 90.88344 * 6 4 3 8 8 C 1.34778 * 134.45683 * 204.64825 * 7 6 4 9 9 O 1.21615 * 119.99573 * 174.74422 * 8 7 6 10 10 C 1.47426 * 120.00050 * 354.73715 * 8 7 6 11 11 C 1.39225 * 120.28315 * 328.58552 * 10 8 7 12 12 C 1.38227 * 120.09115 * 179.97438 * 11 10 8 13 13 C 1.38830 * 120.67345 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.57122 * 359.97207 * 13 12 11 15 15 C 1.40703 * 119.88503 * 359.75131 * 14 13 12 16 16 C 1.40884 * 120.33074 * 180.24685 * 15 14 13 17 17 H 1.07999 * 120.00206 * 153.92041 * 16 15 14 18 18 C 1.40271 * 120.00406 * 333.92130 * 16 15 14 19 19 N 1.30636 * 119.99574 * 344.57648 * 18 16 15 20 20 Si 1.86799 * 120.00482 * 164.57243 * 18 16 15 21 21 H 1.48500 * 109.46741 * 90.00309 * 20 18 16 22 22 H 1.48498 * 109.47187 * 209.99933 * 20 18 16 23 23 H 1.48493 * 109.47126 * 330.00444 * 20 18 16 24 24 C 1.47586 * 91.05132 * 24.55125 * 7 6 4 25 25 H 1.09001 * 109.47268 * 300.00176 * 1 2 3 26 26 H 1.09002 * 109.47048 * 60.00151 * 1 2 3 27 27 H 1.09005 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47039 * 60.00014 * 3 2 1 29 29 H 1.08994 * 109.47215 * 300.00190 * 3 2 1 30 30 H 1.09003 * 109.46921 * 50.33057 * 5 4 3 31 31 H 1.09003 * 109.47184 * 170.33009 * 5 4 3 32 32 H 1.08999 * 109.47076 * 290.33155 * 5 4 3 33 33 H 1.08992 * 113.77156 * 205.14759 * 6 4 3 34 34 H 1.09001 * 113.76752 * 336.54647 * 6 4 3 35 35 H 1.07995 * 119.95191 * 359.94381 * 11 10 8 36 36 H 1.07999 * 119.65692 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.70758 * 179.97438 * 13 12 11 38 38 H 1.07998 * 120.05492 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.08996 * 113.76843 * 221.15604 * 24 7 6 41 41 H 1.09001 * 113.76942 * 89.75231 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0586 0.2410 1.0856 6 6 4.1369 0.9219 -1.3919 7 7 4.2330 2.3918 -1.5147 8 6 4.2734 3.2518 -2.5517 9 8 4.2600 4.4507 -2.3481 10 6 4.3338 2.7391 -3.9326 11 6 4.9775 1.5355 -4.2071 12 6 5.0313 1.0582 -5.5032 13 6 4.4482 1.7681 -6.5441 14 6 3.8050 2.9605 -6.3040 15 6 3.7310 3.4655 -4.9928 16 6 3.0703 4.6829 -4.7355 17 1 2.6440 4.8706 -3.7612 18 6 2.9661 5.6514 -5.7449 19 7 3.7213 5.5708 -6.8078 20 14 1.7475 7.0562 -5.5693 21 1 2.4045 8.1987 -4.8849 22 1 1.2874 7.4835 -6.9150 23 1 0.5820 6.6033 -4.7684 24 6 4.2646 2.5396 -0.0466 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8463 -0.8899 30 1 3.5197 -0.7051 1.0349 31 1 5.1224 0.0621 0.9294 32 1 3.9063 0.6939 2.0653 33 1 5.1036 0.4192 -1.3652 34 1 3.4382 0.4660 -2.0934 35 1 5.4358 0.9742 -3.4063 36 1 5.5328 0.1239 -5.7083 37 1 4.4999 1.3809 -7.5510 38 1 3.3547 3.5061 -7.1200 39 1 3.6490 6.2403 -7.5059 40 1 3.6676 3.3728 0.3240 41 1 5.2689 2.5130 0.3762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601540201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:00 Heat of formation + Delta-G solvation = -27.545088 kcal Electronic energy + Delta-G solvation = -23287.670752 eV Core-core repulsion = 19940.631825 eV Total energy + Delta-G solvation = -3347.038927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24421 -38.13906 -37.19020 -36.22941 -33.77423 -31.70915 -29.97644 -29.49345 -27.56029 -26.52767 -25.97891 -25.46651 -24.89552 -21.77211 -20.84764 -19.01537 -18.46064 -17.28841 -16.44122 -16.24090 -15.96821 -15.49377 -15.32527 -14.98158 -14.47227 -14.22486 -13.68554 -13.39010 -13.20149 -12.88181 -12.66382 -12.47945 -12.38726 -12.02957 -11.79500 -11.62470 -11.53632 -11.19560 -11.08732 -11.01848 -10.86559 -10.80410 -10.49912 -10.29971 -9.96630 -9.68770 -9.59688 -9.23698 -8.57129 -8.04729 -7.53650 -7.43475 -6.84527 -4.39566 2.44588 2.82559 3.06207 3.11852 3.23766 3.46925 3.64750 3.92392 4.05659 4.43410 4.60041 4.88746 5.02849 5.16312 5.25694 5.33653 5.47611 5.55919 5.60067 5.63802 5.65904 5.73141 5.81714 5.82245 5.91935 6.02211 6.09803 6.13951 6.31978 6.35171 6.45254 6.82605 6.99262 7.11749 7.14149 7.23422 7.48844 7.71030 7.94488 8.00332 8.18721 8.43197 8.61159 8.80373 8.88043 9.33263 10.08594 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.005215 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.059969 B = 5367.851738 C = 5998.172575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.088 3.912 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.120 3.880 7 N -0.653 5.653 8 C 0.595 3.405 9 O -0.538 6.538 10 C -0.260 4.260 11 C -0.053 4.053 12 C -0.253 4.253 13 C -0.092 4.092 14 C -0.160 4.160 15 C 0.144 3.856 16 C -0.417 4.417 17 H 0.090 0.910 18 C 0.074 3.926 19 N -0.782 5.782 20 Si 0.914 3.086 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.260 1.260 24 C 0.117 3.883 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.283 0.717 40 H 0.075 0.925 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -8.820 10.736 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.011 3.989 4 C -0.099 4.099 5 C -0.188 4.188 6 C -0.003 4.003 7 N -0.392 5.392 8 C 0.392 3.608 9 O -0.415 6.415 10 C -0.265 4.265 11 C -0.072 4.072 12 C -0.273 4.273 13 C -0.111 4.111 14 C -0.179 4.179 15 C 0.140 3.860 16 C -0.445 4.445 17 H 0.108 0.892 18 C -0.146 4.146 19 N -0.406 5.406 20 Si 0.738 3.262 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.006 4.006 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.355 -8.017 10.423 13.571 hybrid contribution -0.471 0.841 -0.086 0.968 sum -3.826 -7.176 10.337 13.153 Atomic orbital electron populations 1.22717 0.81153 1.02516 1.00045 1.87819 1.19461 1.27871 1.95447 1.22176 0.91427 0.84503 1.00768 1.22402 0.93922 0.96795 0.96825 1.21594 1.00646 0.99504 0.97075 1.23190 0.99814 0.82836 0.94478 1.50141 1.76532 1.07311 1.05176 1.18241 0.74216 0.84620 0.83768 1.90700 1.50582 1.15050 1.85199 1.19331 1.14393 1.01052 0.91718 1.20690 0.97025 0.93804 0.95636 1.20253 1.11844 1.01935 0.93236 1.20786 0.98047 0.95467 0.96782 1.21363 1.03672 0.95330 0.97525 1.17414 0.87158 0.91346 0.90068 1.19853 1.27857 0.98380 0.98406 0.89166 1.26082 0.94886 0.99710 0.93917 1.69739 1.30712 1.32943 1.07238 0.86211 0.81017 0.80556 0.78445 1.19157 1.20027 1.18352 1.23025 0.99401 0.95898 0.82254 0.94337 0.93899 0.89745 0.93087 0.92272 0.91220 0.92335 0.92509 0.90356 0.89812 0.89099 0.89235 0.89191 0.86014 0.90557 0.90630 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.95 9.77 -35.23 -0.34 -5.29 16 3 C 0.09 1.14 5.32 37.16 0.20 1.34 16 4 C -0.10 -1.25 1.21 -153.58 -0.19 -1.44 16 5 C -0.13 -1.30 9.08 37.16 0.34 -0.96 16 6 C 0.12 1.80 5.65 -2.84 -0.02 1.79 16 7 N -0.65 -12.30 3.43 -179.04 -0.61 -12.92 16 8 C 0.60 14.47 7.42 -12.52 -0.09 14.38 16 9 O -0.54 -14.90 15.30 5.26 0.08 -14.82 16 10 C -0.26 -6.60 5.81 -104.37 -0.61 -7.21 16 11 C -0.05 -1.19 8.87 -39.22 -0.35 -1.53 16 12 C -0.25 -5.59 10.03 -39.37 -0.39 -5.98 16 13 C -0.09 -2.13 10.01 -39.60 -0.40 -2.53 16 14 C -0.16 -4.14 8.68 -38.89 -0.34 -4.48 16 15 C 0.14 3.95 5.59 -106.54 -0.60 3.36 16 16 C -0.42 -11.62 7.80 -37.82 -0.29 -11.91 16 17 H 0.09 2.59 6.37 -52.49 -0.33 2.26 16 18 C 0.07 1.90 5.18 -17.30 -0.09 1.81 16 19 N -0.78 -20.38 10.92 55.56 0.61 -19.78 16 20 Si 0.91 19.52 29.59 -169.99 -5.03 14.49 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.12 1.71 7.98 -2.96 -0.02 1.69 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 30 H 0.07 0.72 7.41 -51.93 -0.38 0.33 16 31 H 0.06 0.53 7.98 -51.93 -0.41 0.12 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 34 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 35 H 0.09 1.78 6.13 -52.49 -0.32 1.45 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 3.21 6.19 -52.49 -0.32 2.88 16 39 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 40 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -31.28 339.01 -7.87 -39.15 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.94 Total: 4.29 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.73 Total: -10.24 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: -0.01 Total: -32.69 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.26 Total: -20.11 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.28 -7.87 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds