Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00185 * 2 1 4 4 C 1.52997 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.53004 * 112.94591 * 309.66944 * 4 3 2 6 6 C 1.53948 * 113.74157 * 81.25943 * 4 3 2 7 7 N 1.47814 * 86.03623 * 90.88344 * 6 4 3 8 8 C 1.34778 * 134.45683 * 204.64825 * 7 6 4 9 9 O 1.21615 * 119.99573 * 174.74422 * 8 7 6 10 10 C 1.47426 * 120.00050 * 354.73715 * 8 7 6 11 11 C 1.39225 * 120.28315 * 328.58552 * 10 8 7 12 12 C 1.38227 * 120.09115 * 179.97438 * 11 10 8 13 13 C 1.38830 * 120.67345 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.57122 * 359.97207 * 13 12 11 15 15 C 1.40703 * 119.88503 * 359.75131 * 14 13 12 16 16 C 1.40884 * 120.33074 * 180.24685 * 15 14 13 17 17 H 1.07999 * 120.00206 * 153.92041 * 16 15 14 18 18 C 1.40271 * 120.00406 * 333.92130 * 16 15 14 19 19 N 1.30636 * 119.99574 * 344.57648 * 18 16 15 20 20 Si 1.86799 * 120.00482 * 164.57243 * 18 16 15 21 21 H 1.48500 * 109.46741 * 90.00309 * 20 18 16 22 22 H 1.48498 * 109.47187 * 209.99933 * 20 18 16 23 23 H 1.48493 * 109.47126 * 330.00444 * 20 18 16 24 24 C 1.47586 * 91.05132 * 24.55125 * 7 6 4 25 25 H 1.09001 * 109.47268 * 300.00176 * 1 2 3 26 26 H 1.09002 * 109.47048 * 60.00151 * 1 2 3 27 27 H 1.09005 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47039 * 60.00014 * 3 2 1 29 29 H 1.08994 * 109.47215 * 300.00190 * 3 2 1 30 30 H 1.09003 * 109.46921 * 50.33057 * 5 4 3 31 31 H 1.09003 * 109.47184 * 170.33009 * 5 4 3 32 32 H 1.08999 * 109.47076 * 290.33155 * 5 4 3 33 33 H 1.08992 * 113.77156 * 205.14759 * 6 4 3 34 34 H 1.09001 * 113.76752 * 336.54647 * 6 4 3 35 35 H 1.07995 * 119.95191 * 359.94381 * 11 10 8 36 36 H 1.07999 * 119.65692 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.70758 * 179.97438 * 13 12 11 38 38 H 1.07998 * 120.05492 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.08996 * 113.76843 * 221.15604 * 24 7 6 41 41 H 1.09001 * 113.76942 * 89.75231 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0586 0.2410 1.0856 6 6 4.1369 0.9219 -1.3919 7 7 4.2330 2.3918 -1.5147 8 6 4.2734 3.2518 -2.5517 9 8 4.2600 4.4507 -2.3481 10 6 4.3338 2.7391 -3.9326 11 6 4.9775 1.5355 -4.2071 12 6 5.0313 1.0582 -5.5032 13 6 4.4482 1.7681 -6.5441 14 6 3.8050 2.9605 -6.3040 15 6 3.7310 3.4655 -4.9928 16 6 3.0703 4.6829 -4.7355 17 1 2.6440 4.8706 -3.7612 18 6 2.9661 5.6514 -5.7449 19 7 3.7213 5.5708 -6.8078 20 14 1.7475 7.0562 -5.5693 21 1 2.4045 8.1987 -4.8849 22 1 1.2874 7.4835 -6.9150 23 1 0.5820 6.6033 -4.7684 24 6 4.2646 2.5396 -0.0466 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8463 -0.8899 30 1 3.5197 -0.7051 1.0349 31 1 5.1224 0.0621 0.9294 32 1 3.9063 0.6939 2.0653 33 1 5.1036 0.4192 -1.3652 34 1 3.4382 0.4660 -2.0934 35 1 5.4358 0.9742 -3.4063 36 1 5.5328 0.1239 -5.7083 37 1 4.4999 1.3809 -7.5510 38 1 3.3547 3.5061 -7.1200 39 1 3.6490 6.2403 -7.5059 40 1 3.6676 3.3728 0.3240 41 1 5.2689 2.5130 0.3762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601540201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -46.899163 kcal Electronic energy + Delta-G solvation = -23288.510008 eV Core-core repulsion = 19940.631825 eV Total energy + Delta-G solvation = -3347.878182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60244 -39.77323 -38.50734 -37.89998 -35.67975 -33.07308 -31.83678 -31.26233 -28.47914 -27.95531 -27.23166 -26.97895 -26.17857 -23.53996 -22.71260 -20.45315 -19.82720 -19.15961 -17.89107 -17.45584 -17.32370 -16.96489 -16.73973 -16.42670 -16.02628 -15.72669 -15.21784 -14.99492 -14.51764 -14.37362 -14.12628 -13.95438 -13.70049 -13.46193 -13.20946 -12.93615 -12.88745 -12.82743 -12.64492 -12.48647 -12.35102 -12.15713 -11.90160 -11.83265 -11.51977 -11.33508 -11.14202 -10.65155 -10.37439 -9.65789 -9.39181 -9.31913 -8.74494 -6.40370 0.56327 0.99067 1.29249 1.41938 1.48169 2.03869 2.15428 2.22266 2.64591 2.68502 3.33882 3.68119 3.79224 3.91408 4.15292 4.17604 4.36532 4.40978 4.49568 4.50867 4.55232 4.57382 4.59642 4.66096 4.70616 4.78371 4.85145 4.99482 5.06290 5.10526 5.15971 5.21940 5.25035 5.34586 5.50873 5.59031 5.84715 6.02567 6.09566 6.16662 6.28676 6.58495 6.77598 6.89593 6.94332 7.53609 8.21290 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.005215 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.059969 B = 5367.851738 C = 5998.172575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.088 3.912 4 C -0.080 4.080 5 C -0.121 4.121 6 C 0.115 3.885 7 N -0.657 5.657 8 C 0.587 3.413 9 O -0.590 6.590 10 C -0.281 4.281 11 C -0.051 4.051 12 C -0.244 4.244 13 C -0.090 4.090 14 C -0.187 4.187 15 C 0.112 3.888 16 C -0.457 4.457 17 H 0.065 0.935 18 C 0.035 3.965 19 N -0.811 5.811 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.251 1.251 23 H -0.263 1.263 24 C 0.113 3.887 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.293 0.707 40 H 0.068 0.932 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -11.124 12.111 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.012 3.988 4 C -0.081 4.081 5 C -0.179 4.179 6 C -0.007 4.007 7 N -0.393 5.393 8 C 0.382 3.618 9 O -0.472 6.472 10 C -0.286 4.286 11 C -0.070 4.070 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.207 4.207 15 C 0.108 3.892 16 C -0.486 4.486 17 H 0.083 0.917 18 C -0.182 4.182 19 N -0.436 5.436 20 Si 0.799 3.201 21 H -0.194 1.194 22 H -0.174 1.174 23 H -0.187 1.187 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.790 -10.396 11.824 15.990 hybrid contribution -0.592 1.337 -0.426 1.523 sum -3.382 -9.059 11.398 14.947 Atomic orbital electron populations 1.22912 0.79814 1.03988 1.00304 1.87792 1.20958 1.27335 1.95469 1.22116 0.91990 0.84772 0.99951 1.22258 0.93356 0.95988 0.96456 1.21561 1.01412 0.98511 0.96401 1.23530 1.01270 0.80326 0.95551 1.50136 1.74233 1.08823 1.06119 1.18198 0.74254 0.84527 0.84786 1.90648 1.53167 1.17236 1.86099 1.19737 1.14425 1.02038 0.92380 1.21028 0.96033 0.92845 0.97073 1.20748 1.10268 1.02806 0.92497 1.21161 0.96559 0.94286 0.98815 1.21334 1.05677 0.96907 0.96754 1.17818 0.87950 0.91912 0.91517 1.19823 1.30459 1.00093 0.98198 0.91703 1.26812 0.96264 1.01709 0.93371 1.69753 1.31680 1.34225 1.07938 0.85270 0.78415 0.77069 0.79340 1.19383 1.17421 1.18667 1.23392 1.01249 0.96949 0.79297 0.92775 0.94979 0.87699 0.91347 0.95772 0.91129 0.90720 0.90855 0.87382 0.91185 0.85841 0.85172 0.86182 0.87435 0.89634 0.91316 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -9.47 9.77 -148.98 -1.46 -10.92 16 3 C 0.09 2.22 5.32 71.98 0.38 2.61 16 4 C -0.08 -1.84 1.21 -51.52 -0.06 -1.91 16 5 C -0.12 -1.92 9.08 71.98 0.65 -1.27 16 6 C 0.12 3.22 5.65 86.44 0.49 3.71 16 7 N -0.66 -24.59 3.43 -838.60 -2.88 -27.47 16 8 C 0.59 29.55 7.42 86.66 0.64 30.20 16 9 O -0.59 -34.58 15.30 -4.08 -0.06 -34.64 16 10 C -0.28 -14.64 5.81 -19.70 -0.11 -14.76 16 11 C -0.05 -2.23 8.87 22.50 0.20 -2.03 16 12 C -0.24 -10.14 10.03 22.41 0.22 -9.91 16 13 C -0.09 -4.06 10.01 22.26 0.22 -3.84 16 14 C -0.19 -10.02 8.68 22.72 0.20 -9.82 16 15 C 0.11 6.43 5.59 -21.11 -0.12 6.31 16 16 C -0.46 -27.21 7.80 23.41 0.18 -27.03 16 17 H 0.06 4.05 6.37 -2.91 -0.02 4.04 16 18 C 0.03 1.89 5.18 85.37 0.44 2.33 16 19 N -0.81 -44.01 10.92 21.88 0.24 -43.77 16 20 Si 0.98 41.77 29.59 68.60 2.03 43.80 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.11 3.12 7.98 86.49 0.69 3.81 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 30 H 0.07 1.17 7.41 -2.39 -0.02 1.15 16 31 H 0.07 0.99 7.98 -2.39 -0.02 0.97 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 2.42 7.64 -2.39 -0.02 2.40 16 34 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 35 H 0.12 4.45 6.13 -2.91 -0.02 4.43 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.11 5.94 6.19 -2.91 -0.02 5.92 16 39 H 0.29 14.16 8.29 -92.71 -0.77 13.40 16 40 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.11 2.46 8.10 -2.39 -0.02 2.44 16 Total: -1.00 -73.18 339.01 4.18 -69.01 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.02 Total: 23.87 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 5.28 Total: -19.88 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -2.64 Total: -71.24 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.52 Total: -45.56 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.18 4.18 -69.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601540201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.107 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds