Wall clock time and date at job start Tue Mar 31 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.54401 * 2 1 4 4 O 1.21281 * 120.00034 * 239.82323 * 3 2 1 5 5 N 1.34777 * 120.00184 * 59.81788 * 3 2 1 6 6 C 1.39237 * 119.99857 * 185.18988 * 5 3 2 7 7 C 1.39486 * 119.83082 * 213.47823 * 6 5 3 8 8 C 1.36384 * 120.16638 * 180.20936 * 7 6 5 9 9 C 1.40871 * 119.82734 * 359.52670 * 8 7 6 10 10 C 1.41150 * 120.16280 * 180.27039 * 9 8 7 11 11 H 1.07999 * 119.99944 * 334.99528 * 10 9 8 12 12 C 1.39905 * 119.99892 * 154.99347 * 10 9 8 13 13 N 1.30868 * 120.00040 * 342.34884 * 12 10 9 14 14 Si 1.86802 * 119.99819 * 162.34604 * 12 10 9 15 15 H 1.48498 * 109.47028 * 94.69946 * 14 12 10 16 16 H 1.48496 * 109.47208 * 214.69767 * 14 12 10 17 17 H 1.48503 * 109.47150 * 334.69778 * 14 12 10 18 18 C 1.40866 * 119.67137 * 0.25024 * 9 8 7 19 19 C 1.36374 * 119.83119 * 359.97438 * 18 9 8 20 20 C 1.53181 * 109.61380 * 120.21726 * 2 1 3 21 21 C 1.53094 * 109.16006 * 176.89160 * 20 2 1 22 22 O 1.42909 * 109.41546 * 302.39249 * 21 20 2 23 23 C 1.42899 * 114.09446 * 61.16148 * 22 21 20 24 24 C 1.53092 * 109.41473 * 298.83587 * 23 22 21 25 25 H 1.09006 * 109.46959 * 60.00203 * 1 2 3 26 26 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47413 * 300.00178 * 1 2 3 28 28 H 0.96995 * 120.00360 * 5.19180 * 5 3 2 29 29 H 1.08003 * 119.91727 * 0.02562 * 7 6 5 30 30 H 1.07994 * 120.08153 * 179.79724 * 8 7 6 31 31 H 0.97000 * 120.00008 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.08367 * 180.02562 * 18 9 8 33 33 H 1.07995 * 119.91534 * 180.02562 * 19 18 9 34 34 H 1.08998 * 109.52330 * 296.79905 * 20 2 1 35 35 H 1.08996 * 109.52292 * 56.99011 * 20 2 1 36 36 H 1.09001 * 109.47997 * 182.41035 * 21 20 2 37 37 H 1.09004 * 109.48883 * 62.38220 * 21 20 2 38 38 H 1.09003 * 109.48066 * 178.85809 * 23 22 21 39 39 H 1.08995 * 109.49477 * 58.83255 * 23 22 21 40 40 H 1.08994 * 109.52678 * 297.71089 * 24 23 22 41 41 H 1.09002 * 109.52380 * 177.51355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9080 5 7 1.7066 2.2515 1.0089 6 6 2.0809 3.5916 0.9562 7 6 2.4009 4.2695 2.1325 8 6 2.7644 5.5833 2.0892 9 6 2.8258 6.2529 0.8513 10 6 3.2066 7.6110 0.7977 11 1 3.0641 8.2461 1.6595 12 6 3.7687 8.1342 -0.3717 13 7 4.2592 7.3288 -1.2792 14 14 3.8190 9.9825 -0.6379 15 1 5.1305 10.5122 -0.1855 16 1 3.6364 10.2799 -2.0813 17 1 2.7302 10.6247 0.1414 18 6 2.5057 5.5602 -0.3328 19 6 2.1395 4.2479 -0.2732 20 6 2.0442 -0.7262 1.2469 21 6 3.5731 -0.7882 1.1975 22 8 3.9833 -1.4477 -0.0021 23 6 3.5714 -0.7877 -1.2007 24 6 2.0424 -0.7257 -1.2478 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.2101 1.9164 1.7718 29 1 2.3579 3.7535 3.0803 30 1 3.0087 6.1077 3.0011 31 1 4.6486 7.6916 -2.0901 32 1 2.5510 6.0669 -1.2855 33 1 1.8942 3.7154 -1.1802 34 1 1.7302 -0.1848 2.1392 35 1 1.6393 -1.7378 1.2721 36 1 3.9425 -1.3415 2.0610 37 1 3.9788 0.2234 1.2133 38 1 3.9395 -1.3405 -2.0650 39 1 3.9769 0.2239 -1.2167 40 1 1.6374 -1.7373 -1.2729 41 1 1.7271 -0.1838 -2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608846217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:04 Heat of formation + Delta-G solvation = -71.752144 kcal Electronic energy + Delta-G solvation = -23354.217337 eV Core-core repulsion = 20005.261449 eV Total energy + Delta-G solvation = -3348.955889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78520 -38.46851 -37.08002 -34.79662 -34.51659 -32.92636 -31.03912 -29.52846 -29.05626 -28.38271 -25.29313 -23.64696 -23.47977 -22.11545 -21.33492 -20.40921 -18.81008 -17.34809 -16.92388 -16.17035 -15.93470 -15.88247 -15.23808 -14.93745 -14.44814 -14.34137 -14.01947 -13.80811 -13.18046 -12.79620 -12.66061 -12.40342 -12.28332 -12.12268 -12.02798 -11.87825 -11.80797 -11.50495 -11.28966 -11.12631 -10.96973 -10.58362 -10.53322 -10.38678 -9.96791 -9.80489 -9.52751 -9.39899 -9.01499 -8.62218 -7.54694 -7.02342 -6.75467 -4.30516 2.54494 2.97181 3.06286 3.08320 3.12036 3.35957 3.67625 3.92271 3.95456 4.47056 4.61532 4.63574 4.74285 4.98282 5.12794 5.25664 5.40571 5.47841 5.57894 5.59222 5.63731 5.69727 5.74894 5.88312 5.98045 6.00227 6.07856 6.12479 6.22770 6.37030 6.79078 6.97016 7.02975 7.13595 7.26383 7.27513 7.57235 7.65829 7.94993 8.03447 8.19231 8.30396 8.60807 8.76423 8.86835 8.99184 10.17305 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.003829 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.491869 B = 7310.995491 C = 7564.679894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C 0.506 3.494 4 O -0.524 6.524 5 N -0.648 5.648 6 C -0.008 4.008 7 C -0.104 4.104 8 C -0.216 4.216 9 C 0.106 3.894 10 C -0.460 4.460 11 H 0.078 0.922 12 C 0.075 3.925 13 N -0.788 5.788 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.156 4.156 19 C -0.085 4.085 20 C -0.141 4.141 21 C 0.057 3.943 22 O -0.386 6.386 23 C 0.047 3.953 24 C -0.126 4.126 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.392 0.608 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.281 0.719 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -13.259 2.629 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C 0.293 3.707 4 O -0.401 6.401 5 N -0.291 5.291 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.236 4.236 9 C 0.104 3.896 10 C -0.489 4.489 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.413 5.413 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.176 4.176 19 C -0.105 4.105 20 C -0.179 4.179 21 C -0.020 4.020 22 O -0.305 6.305 23 C -0.029 4.029 24 C -0.164 4.164 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.152 -13.151 1.726 14.229 hybrid contribution -0.322 0.899 0.253 0.988 sum -5.474 -12.252 1.980 13.565 Atomic orbital electron populations 1.21822 0.92354 1.02524 1.02811 1.20892 0.97226 0.92970 0.97568 1.20350 0.80719 0.86645 0.83034 1.90665 1.36689 1.76721 1.36027 1.43005 1.55326 1.08639 1.22089 1.17178 1.15510 0.82569 0.94740 1.20042 1.02168 0.95481 0.94736 1.20541 1.11603 0.93966 0.97487 1.17658 0.88135 0.92987 0.90844 1.19549 1.35548 0.95153 0.98624 0.90374 1.25939 0.92836 1.00397 0.95186 1.69860 1.26293 1.37210 1.07888 0.86320 0.79558 0.82513 0.78471 1.19560 1.20006 1.18399 1.20978 1.03867 0.93530 0.99252 1.20403 1.00365 0.94634 0.95052 1.22263 0.97447 1.01438 0.96776 1.22568 0.93224 0.98194 0.88000 1.87863 1.77295 1.51434 1.13896 1.22867 0.93630 0.99618 0.86807 1.21998 0.97304 1.00014 0.97074 0.91832 0.91577 0.91980 0.77451 0.89307 0.88667 0.90761 0.86301 0.88100 0.90586 0.90076 0.88830 0.92837 0.89295 0.90129 0.90930 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.40 37.16 0.31 -1.09 16 2 C -0.08 -1.04 0.64 -155.48 -0.10 -1.14 16 3 C 0.51 8.68 4.88 -10.99 -0.05 8.63 16 4 O -0.52 -11.20 11.48 5.56 0.06 -11.14 16 5 N -0.65 -11.17 5.08 -9.74 -0.05 -11.22 16 6 C -0.01 -0.17 6.29 -83.57 -0.53 -0.70 16 7 C -0.10 -2.27 9.89 -39.78 -0.39 -2.66 16 8 C -0.22 -5.21 9.74 -39.25 -0.38 -5.60 16 9 C 0.11 2.84 5.57 -106.80 -0.59 2.25 16 10 C -0.46 -12.17 9.04 -37.85 -0.34 -12.51 16 11 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 12 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 13 N -0.79 -20.79 10.97 55.55 0.61 -20.18 16 14 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 18 C -0.16 -4.18 8.64 -39.26 -0.34 -4.52 16 19 C -0.08 -2.09 8.57 -39.79 -0.34 -2.43 16 20 C -0.14 -1.51 4.86 -26.59 -0.13 -1.64 16 21 C 0.06 0.73 6.62 37.21 0.25 0.98 16 22 O -0.39 -5.61 10.77 -35.23 -0.38 -5.99 16 23 C 0.05 0.67 6.55 37.21 0.24 0.91 16 24 C -0.13 -1.58 4.56 -26.59 -0.12 -1.70 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.58 7.69 -51.93 -0.40 0.18 16 28 H 0.39 5.33 7.66 -40.82 -0.31 5.02 16 29 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 32 H 0.12 3.30 6.18 -52.48 -0.32 2.97 16 33 H 0.10 2.50 6.38 -52.49 -0.33 2.16 16 34 H 0.08 0.70 7.41 -51.93 -0.38 0.32 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.40 5.80 -51.93 -0.30 1.10 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -30.22 326.28 -8.27 -38.48 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.79 Total: 10.93 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.61 Total: -19.42 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.56 Total: -31.39 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.32 Total: -17.13 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.22 -8.27 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608846217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.269 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds