Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.54401 * 2 1 4 4 O 1.21281 * 120.00034 * 239.82323 * 3 2 1 5 5 N 1.34777 * 120.00184 * 59.81788 * 3 2 1 6 6 C 1.39237 * 119.99857 * 185.18988 * 5 3 2 7 7 C 1.39486 * 119.83082 * 213.47823 * 6 5 3 8 8 C 1.36384 * 120.16638 * 180.20936 * 7 6 5 9 9 C 1.40871 * 119.82734 * 359.52670 * 8 7 6 10 10 C 1.41150 * 120.16280 * 180.27039 * 9 8 7 11 11 H 1.07999 * 119.99944 * 334.99528 * 10 9 8 12 12 C 1.39905 * 119.99892 * 154.99347 * 10 9 8 13 13 N 1.30868 * 120.00040 * 342.34884 * 12 10 9 14 14 Si 1.86802 * 119.99819 * 162.34604 * 12 10 9 15 15 H 1.48498 * 109.47028 * 94.69946 * 14 12 10 16 16 H 1.48496 * 109.47208 * 214.69767 * 14 12 10 17 17 H 1.48503 * 109.47150 * 334.69778 * 14 12 10 18 18 C 1.40866 * 119.67137 * 0.25024 * 9 8 7 19 19 C 1.36374 * 119.83119 * 359.97438 * 18 9 8 20 20 C 1.53181 * 109.61380 * 120.21726 * 2 1 3 21 21 C 1.53094 * 109.16006 * 176.89160 * 20 2 1 22 22 O 1.42909 * 109.41546 * 302.39249 * 21 20 2 23 23 C 1.42899 * 114.09446 * 61.16148 * 22 21 20 24 24 C 1.53092 * 109.41473 * 298.83587 * 23 22 21 25 25 H 1.09006 * 109.46959 * 60.00203 * 1 2 3 26 26 H 1.08996 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47413 * 300.00178 * 1 2 3 28 28 H 0.96995 * 120.00360 * 5.19180 * 5 3 2 29 29 H 1.08003 * 119.91727 * 0.02562 * 7 6 5 30 30 H 1.07994 * 120.08153 * 179.79724 * 8 7 6 31 31 H 0.97000 * 120.00008 * 179.97438 * 13 12 10 32 32 H 1.08003 * 120.08367 * 180.02562 * 18 9 8 33 33 H 1.07995 * 119.91534 * 180.02562 * 19 18 9 34 34 H 1.08998 * 109.52330 * 296.79905 * 20 2 1 35 35 H 1.08996 * 109.52292 * 56.99011 * 20 2 1 36 36 H 1.09001 * 109.47997 * 182.41035 * 21 20 2 37 37 H 1.09004 * 109.48883 * 62.38220 * 21 20 2 38 38 H 1.09003 * 109.48066 * 178.85809 * 23 22 21 39 39 H 1.08995 * 109.49477 * 58.83255 * 23 22 21 40 40 H 1.08994 * 109.52678 * 297.71089 * 24 23 22 41 41 H 1.09002 * 109.52380 * 177.51355 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9080 5 7 1.7066 2.2515 1.0089 6 6 2.0809 3.5916 0.9562 7 6 2.4009 4.2695 2.1325 8 6 2.7644 5.5833 2.0892 9 6 2.8258 6.2529 0.8513 10 6 3.2066 7.6110 0.7977 11 1 3.0641 8.2461 1.6595 12 6 3.7687 8.1342 -0.3717 13 7 4.2592 7.3288 -1.2792 14 14 3.8190 9.9825 -0.6379 15 1 5.1305 10.5122 -0.1855 16 1 3.6364 10.2799 -2.0813 17 1 2.7302 10.6247 0.1414 18 6 2.5057 5.5602 -0.3328 19 6 2.1395 4.2479 -0.2732 20 6 2.0442 -0.7262 1.2469 21 6 3.5731 -0.7882 1.1975 22 8 3.9833 -1.4477 -0.0021 23 6 3.5714 -0.7877 -1.2007 24 6 2.0424 -0.7257 -1.2478 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.2101 1.9164 1.7718 29 1 2.3579 3.7535 3.0803 30 1 3.0087 6.1077 3.0011 31 1 4.6486 7.6916 -2.0901 32 1 2.5510 6.0669 -1.2855 33 1 1.8942 3.7154 -1.1802 34 1 1.7302 -0.1848 2.1392 35 1 1.6393 -1.7378 1.2721 36 1 3.9425 -1.3415 2.0610 37 1 3.9788 0.2234 1.2133 38 1 3.9395 -1.3405 -2.0650 39 1 3.9769 0.2239 -1.2167 40 1 1.6374 -1.7373 -1.2729 41 1 1.7271 -0.1838 -2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608846217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = -90.659726 kcal Electronic energy + Delta-G solvation = -23355.037231 eV Core-core repulsion = 20005.261449 eV Total energy + Delta-G solvation = -3349.775783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.05539 -39.94477 -38.69019 -36.25341 -35.91352 -34.65575 -32.07491 -31.44939 -30.82360 -29.36120 -27.05011 -24.75704 -24.61975 -23.44155 -23.16399 -22.05489 -20.23214 -19.26635 -18.34865 -17.57598 -17.21349 -17.00406 -16.84299 -16.20929 -15.79199 -15.64711 -15.53748 -15.03185 -14.85009 -14.53447 -14.01070 -13.73869 -13.58290 -13.54055 -13.23135 -13.16315 -12.96638 -12.90178 -12.79807 -12.71397 -12.32953 -12.25894 -11.77378 -11.73213 -11.50683 -11.40443 -11.22297 -10.75219 -10.55377 -10.20476 -9.47409 -8.88159 -8.63042 -6.28344 0.79577 1.11863 1.36549 1.42059 1.52874 1.81457 2.19333 2.32251 2.74657 2.92210 3.49424 3.60852 3.71133 3.78153 4.01891 4.04286 4.29070 4.41037 4.44070 4.50354 4.60537 4.64403 4.66809 4.77947 4.84863 4.93170 4.96385 5.04530 5.06244 5.09601 5.14576 5.22366 5.26602 5.28801 5.43728 5.65682 5.84713 6.06884 6.09523 6.19949 6.32491 6.65703 6.73481 6.90937 6.99314 7.42398 8.31698 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.003829 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.491869 B = 7310.995491 C = 7564.679894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C 0.503 3.497 4 O -0.572 6.572 5 N -0.640 5.640 6 C 0.008 3.992 7 C -0.100 4.100 8 C -0.224 4.224 9 C 0.073 3.927 10 C -0.496 4.496 11 H 0.082 0.918 12 C 0.031 3.969 13 N -0.830 5.830 14 Si 0.984 3.016 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.254 1.254 18 C -0.181 4.181 19 C -0.099 4.099 20 C -0.134 4.134 21 C 0.049 3.951 22 O -0.395 6.395 23 C 0.046 3.954 24 C -0.124 4.124 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.415 0.585 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.287 0.713 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.019 0.981 38 H 0.103 0.897 39 H 0.039 0.961 40 H 0.104 0.896 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 -15.223 4.619 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C 0.291 3.709 4 O -0.451 6.451 5 N -0.285 5.285 6 C -0.085 4.085 7 C -0.120 4.120 8 C -0.244 4.244 9 C 0.071 3.929 10 C -0.525 4.525 11 H 0.100 0.900 12 C -0.184 4.184 13 N -0.456 5.456 14 Si 0.805 3.195 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.177 1.177 18 C -0.201 4.201 19 C -0.119 4.119 20 C -0.172 4.172 21 C -0.027 4.027 22 O -0.314 6.314 23 C -0.030 4.030 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.252 0.748 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.037 0.963 38 H 0.121 0.879 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.671 -15.154 3.753 16.977 hybrid contribution 0.156 1.315 -0.341 1.367 sum -6.515 -13.839 3.413 15.672 Atomic orbital electron populations 1.21857 0.89844 1.04663 1.02863 1.20946 0.98976 0.89209 0.98753 1.21374 0.79372 0.88479 0.81625 1.90668 1.38607 1.78050 1.37754 1.42919 1.55557 1.06742 1.23286 1.17254 1.12956 0.84562 0.93726 1.20414 1.00435 0.94741 0.96406 1.20828 1.11319 0.95146 0.97074 1.17996 0.89308 0.93830 0.91787 1.19837 1.37173 0.95667 0.99809 0.89962 1.26863 0.91706 1.05414 0.94369 1.69945 1.27450 1.39545 1.08653 0.85166 0.79879 0.75974 0.78526 1.18611 1.19393 1.17723 1.20872 1.06030 0.94548 0.98699 1.20432 1.01110 0.94171 0.96174 1.22307 0.95465 1.03149 0.96274 1.22759 0.95087 0.96694 0.88190 1.87849 1.77888 1.51371 1.14339 1.22802 0.95058 0.97587 0.87576 1.22016 0.95875 1.01558 0.96732 0.93178 0.88379 0.90677 0.74773 0.84818 0.87201 0.90289 0.88721 0.89127 0.88431 0.86986 0.86197 0.96298 0.87892 0.94274 0.87725 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.40 71.98 0.60 -1.61 16 2 C -0.08 -1.69 0.64 -52.81 -0.03 -1.72 16 3 C 0.50 16.90 4.88 87.66 0.43 17.32 16 4 O -0.57 -25.34 11.48 -3.03 -0.03 -25.37 16 5 N -0.64 -20.97 5.08 -303.11 -1.54 -22.51 16 6 C 0.01 0.37 6.29 38.57 0.24 0.61 16 7 C -0.10 -4.20 9.89 22.14 0.22 -3.98 16 8 C -0.22 -10.81 9.74 22.48 0.22 -10.59 16 9 C 0.07 4.07 5.57 -21.28 -0.12 3.95 16 10 C -0.50 -27.22 9.04 23.39 0.21 -27.01 16 11 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 12 C 0.03 1.61 5.13 85.24 0.44 2.05 16 13 N -0.83 -46.11 10.97 21.82 0.24 -45.87 16 14 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 16 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 18 C -0.18 -10.26 8.64 22.48 0.19 -10.07 16 19 C -0.10 -5.09 8.57 22.13 0.19 -4.90 16 20 C -0.13 -2.31 4.86 30.69 0.15 -2.16 16 21 C 0.05 1.15 6.62 72.01 0.48 1.62 16 22 O -0.40 -10.89 10.77 -148.98 -1.60 -12.50 16 23 C 0.05 1.30 6.55 72.01 0.47 1.77 16 24 C -0.12 -2.88 4.56 30.68 0.14 -2.74 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.05 7.69 -2.39 -0.02 1.03 16 28 H 0.41 9.79 7.66 -92.71 -0.71 9.08 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 32 H 0.09 5.69 6.18 -2.91 -0.02 5.67 16 33 H 0.09 4.76 6.38 -2.91 -0.02 4.74 16 34 H 0.10 1.29 7.41 -2.39 -0.02 1.27 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.02 0.56 7.38 -2.39 -0.02 0.54 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.04 1.43 5.80 -2.39 -0.01 1.42 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 Total: -1.00 -71.28 326.28 3.25 -68.03 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.33 Total: 34.46 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.83 Total: -37.43 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.30 Total: -68.38 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.64 Total: -37.87 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -71.28 3.25 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608846217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.628 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds