Wall clock time and date at job start Tue Mar 31 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99590 * 2 1 4 4 H 1.48497 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47207 * 299.99749 * 3 2 1 6 6 H 1.48498 * 109.47215 * 60.00052 * 3 2 1 7 7 C 1.37872 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99881 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99588 * 90.00575 * 10 9 7 12 12 C 1.50695 * 109.47371 * 89.99920 * 11 10 9 13 13 C 1.34512 * 125.79226 * 89.99680 * 12 11 10 14 14 C 1.41379 * 106.84086 * 179.97438 * 13 12 11 15 15 C 1.34512 * 106.84332 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.41872 * 359.97438 * 15 14 13 17 17 C 1.34770 * 120.00269 * 270.00154 * 10 9 7 18 18 O 1.21284 * 120.00032 * 0.02562 * 17 10 9 19 19 C 1.50706 * 119.99884 * 179.97438 * 17 10 9 20 20 H 1.09000 * 115.55955 * 325.65877 * 19 17 10 21 21 C 1.53128 * 117.50996 * 111.39038 * 19 17 10 22 22 C 1.52460 * 117.50979 * 179.85291 * 19 17 10 23 23 C 1.53257 * 128.58100 * 134.95844 * 22 19 17 24 24 C 1.53894 * 86.88302 * 194.88800 * 23 22 19 25 25 C 1.53254 * 128.58824 * 10.15595 * 22 19 17 26 26 H 0.97002 * 120.00313 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46742 * 60.00611 * 9 7 2 28 28 H 1.08997 * 109.47396 * 300.00460 * 9 7 2 29 29 H 1.09004 * 109.46953 * 329.99393 * 11 10 9 30 30 H 1.09001 * 109.47000 * 210.00027 * 11 10 9 31 31 H 1.07997 * 126.57601 * 0.02562 * 13 12 11 32 32 H 1.08007 * 126.57604 * 180.02562 * 14 13 12 33 33 H 1.08004 * 125.79431 * 180.02562 * 15 14 13 34 34 H 1.08997 * 117.51263 * 214.89248 * 21 19 17 35 35 H 1.08998 * 117.51196 * 0.02562 * 21 19 17 36 36 H 1.09002 * 113.64494 * 309.38187 * 23 22 19 37 37 H 1.08996 * 113.65064 * 80.38518 * 23 22 19 38 38 H 1.09006 * 113.58368 * 270.39098 * 24 23 22 39 39 H 1.08991 * 113.58994 * 139.57293 * 24 23 22 40 40 H 1.08997 * 113.64603 * 279.60757 * 25 22 19 41 41 H 1.08994 * 113.64698 * 50.52096 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6801 -4.1699 1.2664 12 6 1.7638 -5.2844 1.7016 13 6 1.8991 -6.5840 1.3825 14 6 0.8281 -7.2709 1.9990 15 6 0.1021 -6.3498 2.6576 16 8 0.6736 -5.1484 2.4741 17 6 2.6403 -4.1243 -1.1694 18 8 2.2458 -3.6626 -2.2193 19 6 3.6201 -5.2693 -1.1706 20 1 4.3481 -5.2662 -0.3593 21 6 3.1188 -6.6288 -1.6659 22 6 4.0742 -5.8063 -2.5234 23 6 5.4922 -6.1616 -2.9836 24 6 4.9348 -6.1671 -4.4180 25 6 3.8378 -5.2117 -3.9160 26 1 -0.4851 0.8400 -0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.6884 -3.3886 2.0264 30 1 3.6895 -4.5598 1.1352 31 1 2.6771 -7.0194 0.7730 32 1 0.6309 -8.3317 1.9505 33 1 -0.7889 -6.5435 3.2365 34 1 3.5176 -7.5197 -1.1809 35 1 2.0805 -6.6945 -1.9911 36 1 6.2216 -5.3725 -2.8010 37 1 5.8304 -7.1399 -2.6421 38 1 4.5556 -7.1387 -4.7348 39 1 5.6059 -5.7154 -5.1484 40 1 2.8498 -5.4286 -4.3220 41 1 4.1053 -4.1579 -3.9926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610737940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:40 Heat of formation + Delta-G solvation = 34.233443 kcal Electronic energy + Delta-G solvation = -23374.218883 eV Core-core repulsion = 20029.858874 eV Total energy + Delta-G solvation = -3344.360009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27906 -39.97486 -38.02130 -35.11166 -33.60469 -32.72278 -32.52140 -30.11704 -27.58961 -25.53292 -25.50579 -24.20662 -22.98282 -21.83806 -21.43822 -20.45348 -18.79150 -17.89325 -17.16429 -16.77831 -16.24600 -15.78480 -15.33265 -15.11099 -14.97281 -14.53356 -14.06199 -13.68031 -13.43053 -12.71500 -12.57547 -12.49501 -12.33563 -12.31423 -11.98434 -11.85697 -11.51948 -11.39564 -11.31164 -11.13230 -10.87589 -10.60775 -10.20107 -10.15021 -9.89525 -9.68213 -9.63703 -9.51940 -8.84694 -8.43544 -8.27882 -7.75886 -6.03276 -4.08173 1.95749 2.81253 3.09883 3.30597 3.33544 3.38274 3.42554 3.88309 4.03704 4.44237 4.58493 4.75537 4.89638 4.92709 5.02732 5.04838 5.18064 5.23948 5.29477 5.34656 5.46953 5.54420 5.67254 5.72941 5.80490 5.90075 5.93889 5.96124 5.99916 6.10958 6.14010 6.32919 6.33865 6.46453 6.57532 6.72362 7.06760 7.38327 7.46267 7.53431 7.92894 8.23247 8.36902 8.90940 9.08973 9.56837 11.05035 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.006684 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.806832 B = 4188.216060 C = 6380.259374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.246 3.754 10 N -0.590 5.590 11 C 0.188 3.812 12 C -0.014 4.014 13 C -0.209 4.209 14 C -0.219 4.219 15 C -0.045 4.045 16 O -0.166 6.166 17 C 0.539 3.461 18 O -0.529 6.529 19 C -0.176 4.176 20 H 0.117 0.883 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.098 4.098 24 C -0.142 4.142 25 C -0.081 4.081 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.197 0.803 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -16.278 1.334 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.321 5.321 11 C 0.063 3.937 12 C -0.066 4.066 13 C -0.229 4.229 14 C -0.238 4.238 15 C -0.114 4.114 16 O -0.061 6.061 17 C 0.326 3.674 18 O -0.405 6.405 19 C -0.197 4.197 20 H 0.135 0.865 21 C -0.160 4.160 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.180 4.180 25 C -0.119 4.119 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.214 0.786 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.901 -15.575 0.879 17.058 hybrid contribution 0.269 0.642 0.270 0.746 sum 7.170 -14.933 1.149 16.605 Atomic orbital electron populations 1.69955 1.06009 1.26883 1.50420 1.24937 0.94865 0.99216 0.95074 0.86443 0.79993 0.83408 0.77581 1.19777 1.20892 1.20965 1.21454 0.93381 0.90549 1.51060 0.92303 1.19328 0.87398 0.81919 0.98586 1.48237 1.46101 1.34550 1.03248 1.19869 0.93036 0.92517 0.88261 1.23292 0.89836 0.96934 0.96571 1.21629 1.02377 0.93002 1.05862 1.21754 0.98055 1.00424 1.03585 1.23993 1.00578 0.82170 1.04645 1.84105 1.34374 1.32637 1.55001 1.19393 0.81376 0.82652 0.83978 1.90661 1.57978 1.61020 1.30840 1.22302 1.02295 0.95433 0.99639 0.86533 1.22736 0.99428 0.92579 1.01211 1.22247 0.96695 1.02378 0.91673 1.22483 0.93982 1.01126 0.95916 1.22814 0.98943 1.00183 0.96025 1.22299 0.98628 0.99093 0.91835 0.92777 0.93861 0.94849 0.88271 0.88228 0.83616 0.83937 0.78604 0.88173 0.88276 0.89737 0.91601 0.90444 0.91524 0.91424 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 10 N -0.59 -12.67 2.44 -176.43 -0.43 -13.10 16 11 C 0.19 3.17 5.76 -5.19 -0.03 3.14 16 12 C -0.01 -0.23 6.90 -35.63 -0.25 -0.48 16 13 C -0.21 -2.93 10.44 -39.70 -0.41 -3.34 16 14 C -0.22 -2.81 10.91 -39.70 -0.43 -3.25 16 15 C -0.05 -0.61 12.09 29.41 0.36 -0.25 16 16 O -0.17 -2.85 10.65 5.71 0.06 -2.79 16 17 C 0.54 11.30 7.46 -10.99 -0.08 11.21 16 18 O -0.53 -13.21 14.71 5.55 0.08 -13.13 16 19 C -0.18 -2.68 4.80 -91.98 -0.44 -3.13 16 20 H 0.12 1.52 6.44 -51.93 -0.33 1.18 16 21 C -0.12 -1.58 8.73 -26.94 -0.24 -1.82 16 22 C -0.13 -1.80 2.88 -154.79 -0.45 -2.24 16 23 C -0.10 -1.08 8.10 -26.13 -0.21 -1.29 16 24 C -0.14 -1.58 8.08 -25.80 -0.21 -1.79 16 25 C -0.08 -1.20 6.47 -26.14 -0.17 -1.37 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 28 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.10 1.71 8.07 -51.93 -0.42 1.29 16 30 H 0.10 1.34 6.00 -51.93 -0.31 1.02 16 31 H 0.15 1.76 5.90 -52.49 -0.31 1.45 16 32 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.20 1.86 8.06 -52.48 -0.42 1.43 16 34 H 0.10 1.01 7.78 -51.93 -0.40 0.60 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.69 343.37 -8.33 -42.02 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.93 Total: 2.71 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.01 Total: -11.69 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.31 Total: -39.26 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.14 Total: -15.92 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.69 -8.33 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610737940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.256 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds