Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99590 * 2 1 4 4 H 1.48497 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47207 * 299.99749 * 3 2 1 6 6 H 1.48498 * 109.47215 * 60.00052 * 3 2 1 7 7 C 1.37872 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99881 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99588 * 90.00575 * 10 9 7 12 12 C 1.50695 * 109.47371 * 89.99920 * 11 10 9 13 13 C 1.34512 * 125.79226 * 89.99680 * 12 11 10 14 14 C 1.41379 * 106.84086 * 179.97438 * 13 12 11 15 15 C 1.34512 * 106.84332 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.41872 * 359.97438 * 15 14 13 17 17 C 1.34770 * 120.00269 * 270.00154 * 10 9 7 18 18 O 1.21284 * 120.00032 * 0.02562 * 17 10 9 19 19 C 1.50706 * 119.99884 * 179.97438 * 17 10 9 20 20 H 1.09000 * 115.55955 * 325.65877 * 19 17 10 21 21 C 1.53128 * 117.50996 * 111.39038 * 19 17 10 22 22 C 1.52460 * 117.50979 * 179.85291 * 19 17 10 23 23 C 1.53257 * 128.58100 * 134.95844 * 22 19 17 24 24 C 1.53894 * 86.88302 * 194.88800 * 23 22 19 25 25 C 1.53254 * 128.58824 * 10.15595 * 22 19 17 26 26 H 0.97002 * 120.00313 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46742 * 60.00611 * 9 7 2 28 28 H 1.08997 * 109.47396 * 300.00460 * 9 7 2 29 29 H 1.09004 * 109.46953 * 329.99393 * 11 10 9 30 30 H 1.09001 * 109.47000 * 210.00027 * 11 10 9 31 31 H 1.07997 * 126.57601 * 0.02562 * 13 12 11 32 32 H 1.08007 * 126.57604 * 180.02562 * 14 13 12 33 33 H 1.08004 * 125.79431 * 180.02562 * 15 14 13 34 34 H 1.08997 * 117.51263 * 214.89248 * 21 19 17 35 35 H 1.08998 * 117.51196 * 0.02562 * 21 19 17 36 36 H 1.09002 * 113.64494 * 309.38187 * 23 22 19 37 37 H 1.08996 * 113.65064 * 80.38518 * 23 22 19 38 38 H 1.09006 * 113.58368 * 270.39098 * 24 23 22 39 39 H 1.08991 * 113.58994 * 139.57293 * 24 23 22 40 40 H 1.08997 * 113.64603 * 279.60757 * 25 22 19 41 41 H 1.08994 * 113.64698 * 50.52096 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6801 -4.1699 1.2664 12 6 1.7638 -5.2844 1.7016 13 6 1.8991 -6.5840 1.3825 14 6 0.8281 -7.2709 1.9990 15 6 0.1021 -6.3498 2.6576 16 8 0.6736 -5.1484 2.4741 17 6 2.6403 -4.1243 -1.1694 18 8 2.2458 -3.6626 -2.2193 19 6 3.6201 -5.2693 -1.1706 20 1 4.3481 -5.2662 -0.3593 21 6 3.1188 -6.6288 -1.6659 22 6 4.0742 -5.8063 -2.5234 23 6 5.4922 -6.1616 -2.9836 24 6 4.9348 -6.1671 -4.4180 25 6 3.8378 -5.2117 -3.9160 26 1 -0.4851 0.8400 -0.0004 27 1 0.6243 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.6884 -3.3886 2.0264 30 1 3.6895 -4.5598 1.1352 31 1 2.6771 -7.0194 0.7730 32 1 0.6309 -8.3317 1.9505 33 1 -0.7889 -6.5435 3.2365 34 1 3.5176 -7.5197 -1.1809 35 1 2.0805 -6.6945 -1.9911 36 1 6.2216 -5.3725 -2.8010 37 1 5.8304 -7.1399 -2.6421 38 1 4.5556 -7.1387 -4.7348 39 1 5.6059 -5.7154 -5.1484 40 1 2.8498 -5.4286 -4.3220 41 1 4.1053 -4.1579 -3.9926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610737940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 14.115945 kcal Electronic energy + Delta-G solvation = -23375.091243 eV Core-core repulsion = 20029.858874 eV Total energy + Delta-G solvation = -3345.232369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.41651 -41.30533 -39.40737 -36.82876 -35.09287 -34.40799 -33.76449 -31.53595 -29.50952 -26.83939 -26.53894 -26.00975 -23.97003 -23.47634 -22.54918 -21.63556 -20.13931 -19.08053 -18.80370 -18.35461 -17.85426 -17.31012 -16.65430 -16.36733 -16.30956 -16.02891 -15.46201 -15.09697 -14.96764 -14.34543 -14.01989 -13.61912 -13.57627 -13.54052 -13.41094 -13.17802 -13.06291 -12.88795 -12.72056 -12.57788 -12.37661 -12.23579 -12.19951 -11.75243 -11.19351 -10.96128 -10.75218 -10.70546 -10.63320 -10.46710 -9.66364 -9.34285 -8.25761 -6.41274 0.79973 1.34197 1.36629 1.48838 1.64712 1.76008 2.20087 2.34050 2.43868 2.84976 3.03915 3.42193 3.72935 3.76954 3.85198 3.92719 4.01038 4.02373 4.18662 4.24898 4.36130 4.51268 4.55528 4.70074 4.80346 4.88565 4.93740 4.94639 4.96727 5.06101 5.09335 5.13657 5.17378 5.21228 5.25949 5.45030 5.49119 5.57260 5.71471 5.77140 6.00772 6.31671 6.65369 6.72456 7.24831 7.44942 8.82389 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.006684 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.806832 B = 4188.216060 C = 6380.259374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.267 3.733 10 N -0.597 5.597 11 C 0.188 3.812 12 C -0.054 4.054 13 C -0.191 4.191 14 C -0.221 4.221 15 C -0.053 4.053 16 O -0.203 6.203 17 C 0.528 3.472 18 O -0.586 6.586 19 C -0.185 4.185 20 H 0.149 0.851 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.102 4.102 26 H 0.267 0.733 27 H -0.008 1.008 28 H 0.012 0.988 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.229 0.771 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -18.926 2.123 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.146 3.854 10 N -0.327 5.327 11 C 0.065 3.935 12 C -0.104 4.104 13 C -0.211 4.211 14 C -0.239 4.239 15 C -0.120 4.120 16 O -0.100 6.100 17 C 0.318 3.682 18 O -0.466 6.466 19 C -0.206 4.206 20 H 0.166 0.834 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.118 4.118 24 C -0.164 4.164 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.011 0.989 28 H 0.030 0.970 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.245 0.755 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.505 -18.263 1.703 20.659 hybrid contribution -0.669 1.418 0.015 1.568 sum 8.837 -16.845 1.719 19.100 Atomic orbital electron populations 1.70086 1.07770 1.28146 1.51040 1.25930 0.95810 1.03299 0.94314 0.85307 0.78848 0.78311 0.77982 1.18768 1.20694 1.19372 1.21717 0.93378 0.91640 1.51206 0.92419 1.18658 0.87844 0.83921 0.94999 1.48208 1.45186 1.33579 1.05719 1.20069 0.95156 0.92681 0.85591 1.23183 0.90734 0.97606 0.98923 1.21983 1.02673 0.91935 1.04460 1.22188 0.97187 1.01907 1.02655 1.24828 1.01310 0.81225 1.04620 1.84071 1.35216 1.34784 1.55910 1.20471 0.81511 0.83500 0.82707 1.90628 1.60172 1.63092 1.32733 1.22233 1.01963 0.94325 1.02051 0.83354 1.22864 0.98439 0.92529 0.99762 1.22547 0.99085 1.02117 0.90040 1.22462 0.91813 1.02782 0.94772 1.22783 0.97118 0.99639 0.96838 1.22327 0.98974 0.98468 0.94215 0.92400 0.98942 0.96950 0.89694 0.84243 0.81128 0.80628 0.75458 0.83505 0.90341 0.89579 0.88349 0.88718 0.90484 0.93770 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 8 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 9 C 0.27 15.32 5.16 85.63 0.44 15.76 16 10 N -0.60 -26.83 2.44 -830.48 -2.03 -28.86 16 11 C 0.19 6.38 5.76 85.63 0.49 6.88 16 12 C -0.05 -1.73 6.90 24.83 0.17 -1.56 16 13 C -0.19 -4.83 10.44 22.19 0.23 -4.60 16 14 C -0.22 -5.00 10.91 22.19 0.24 -4.76 16 15 C -0.05 -1.33 12.09 66.97 0.81 -0.52 16 16 O -0.20 -7.06 10.65 -2.47 -0.03 -7.09 16 17 C 0.53 22.95 7.46 87.66 0.65 23.61 16 18 O -0.59 -31.46 14.71 -3.04 -0.04 -31.50 16 19 C -0.19 -5.34 4.80 -11.67 -0.06 -5.40 16 20 H 0.15 3.29 6.44 -2.39 -0.02 3.28 16 21 C -0.10 -2.25 8.73 30.46 0.27 -1.99 16 22 C -0.14 -3.54 2.88 -52.37 -0.15 -3.69 16 23 C -0.08 -1.48 8.10 30.98 0.25 -1.23 16 24 C -0.13 -2.50 8.08 31.19 0.25 -2.25 16 25 C -0.10 -3.09 6.47 30.98 0.20 -2.89 16 26 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 27 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 28 H 0.01 0.75 8.07 -2.39 -0.02 0.73 16 29 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 30 H 0.14 3.47 6.00 -2.39 -0.01 3.45 16 31 H 0.17 3.31 5.90 -2.91 -0.02 3.29 16 32 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.23 3.85 8.06 -2.91 -0.02 3.82 16 34 H 0.15 2.02 7.78 -2.39 -0.02 2.01 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 Total: -1.00 -80.95 343.37 5.75 -75.20 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.02 Total: 16.22 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.51 Total: -13.93 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.74 Total: -87.00 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.07 Total: -38.59 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.95 5.75 -75.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610737940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.315 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds