Wall clock time and date at job start Tue Mar 31 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48501 * 109.46785 * 269.99385 * 3 2 1 5 5 H 1.48492 * 109.47416 * 29.99602 * 3 2 1 6 6 H 1.48503 * 109.46739 * 149.99774 * 3 2 1 7 7 C 1.37879 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99675 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46793 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99957 * 269.99972 * 10 9 7 12 12 C 1.50706 * 109.47149 * 269.99955 * 11 10 9 13 13 C 1.34510 * 125.79212 * 89.99970 * 12 11 10 14 14 C 1.41383 * 106.84655 * 180.02562 * 13 12 11 15 15 C 1.34515 * 106.83354 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.42436 * 359.73653 * 15 14 13 17 17 C 1.34778 * 120.00192 * 90.00049 * 10 9 7 18 18 O 1.21282 * 119.99732 * 359.97438 * 17 10 9 19 19 C 1.50697 * 120.00167 * 179.97438 * 17 10 9 20 20 H 1.09007 * 115.57841 * 34.22868 * 19 17 10 21 21 C 1.53119 * 117.51587 * 248.46183 * 19 17 10 22 22 C 1.52461 * 59.85855 * 252.55088 * 21 19 17 23 23 C 1.53252 * 128.58482 * 242.40332 * 22 21 19 24 24 C 1.53893 * 86.88554 * 194.88180 * 23 22 21 25 25 C 1.53256 * 128.58907 * 117.59645 * 22 21 19 26 26 H 0.96999 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47898 * 59.99845 * 9 7 2 28 28 H 1.08997 * 109.47501 * 299.99289 * 9 7 2 29 29 H 1.09003 * 109.47341 * 29.99780 * 11 10 9 30 30 H 1.08999 * 109.47584 * 150.00274 * 11 10 9 31 31 H 1.08006 * 126.57618 * 359.96148 * 13 12 11 32 32 H 1.07993 * 126.58069 * 180.02562 * 14 13 12 33 33 H 1.08009 * 125.78558 * 180.02562 * 15 14 13 34 34 H 1.08992 * 117.51619 * 145.10113 * 21 19 17 35 35 H 1.09000 * 117.54291 * 359.97438 * 21 19 17 36 36 H 1.09004 * 113.64339 * 309.37841 * 23 22 21 37 37 H 1.08996 * 113.65015 * 80.38625 * 23 22 21 38 38 H 1.08994 * 113.58858 * 270.39430 * 24 23 22 39 39 H 1.09000 * 113.58960 * 139.56593 * 24 23 22 40 40 H 1.09004 * 113.64188 * 279.61220 * 25 22 21 41 41 H 1.09000 * 113.64167 * 50.52482 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2682 12 6 1.7624 -5.2836 -1.7032 13 6 0.6698 -5.1471 -2.4758 14 6 0.1144 -6.4379 -2.6319 15 6 0.9006 -7.2859 -1.9447 16 8 1.9002 -6.5820 -1.3888 17 6 2.6411 -4.1249 1.1677 18 8 2.2473 -3.6636 2.2180 19 6 3.6199 -5.2706 1.1677 20 1 4.3460 -5.2693 0.3546 21 6 3.1191 -6.6289 1.6665 22 6 4.0777 -5.8059 2.5199 23 6 5.4968 -6.1615 2.9763 24 6 5.3700 -5.0088 3.9880 25 6 3.8460 -5.2091 3.9123 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5572 -0.8896 28 1 0.6242 -2.5568 0.8903 29 1 2.6868 -3.3877 -2.0279 30 1 3.6886 -4.5594 -1.1379 31 1 0.2892 -4.2276 -2.8956 32 1 -0.7710 -6.6938 -3.1947 33 1 0.7554 -8.3527 -1.8588 34 1 3.5157 -7.5209 1.1816 35 1 2.0819 -6.6940 1.9951 36 1 5.5731 -7.1446 3.4410 37 1 6.2568 -5.9921 2.2136 38 1 5.7034 -4.0473 3.5977 39 1 5.7920 -5.2386 4.9663 40 1 3.2826 -4.2760 3.8997 41 1 3.4614 -5.9266 4.6370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610737941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:43 Heat of formation + Delta-G solvation = 34.711221 kcal Electronic energy + Delta-G solvation = -23443.592937 eV Core-core repulsion = 20099.253647 eV Total energy + Delta-G solvation = -3344.339291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26913 -39.95556 -37.94667 -35.13656 -33.44997 -32.77220 -32.52961 -30.11083 -27.67053 -25.47813 -25.44608 -24.31041 -22.52897 -21.93748 -21.42874 -20.45052 -18.92149 -17.85893 -17.08359 -16.77364 -16.27146 -15.71802 -15.25308 -15.03211 -14.84644 -14.53953 -14.24514 -13.58737 -13.48265 -12.65155 -12.57360 -12.49202 -12.38946 -12.23671 -11.95519 -11.77832 -11.48736 -11.33659 -11.25402 -11.16427 -10.85090 -10.61349 -10.21409 -10.04950 -9.79771 -9.70109 -9.63078 -9.52547 -8.72958 -8.45117 -8.26406 -7.78100 -6.05671 -4.10711 1.94691 2.85646 3.07375 3.29238 3.34515 3.36787 3.41702 3.87743 4.13488 4.43246 4.65378 4.79220 4.90646 4.98881 5.08128 5.13343 5.19245 5.28277 5.29065 5.38917 5.57065 5.58726 5.74392 5.83695 5.88635 5.90871 5.96572 6.02891 6.04757 6.20736 6.21986 6.33411 6.47755 6.55841 6.72885 6.75253 7.03246 7.36845 7.44305 7.52386 7.90631 8.20865 8.34528 8.88855 9.08244 9.54617 11.02424 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.006910 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.273373 B = 4050.866655 C = 6255.492738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.591 5.591 11 C 0.192 3.808 12 C -0.022 4.022 13 C -0.197 4.197 14 C -0.214 4.214 15 C -0.052 4.052 16 O -0.170 6.170 17 C 0.540 3.460 18 O -0.529 6.529 19 C -0.157 4.157 20 H 0.117 0.883 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.137 4.137 25 C -0.108 4.108 26 H 0.263 0.737 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.196 0.804 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -15.374 -1.929 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.074 4.074 13 C -0.217 4.217 14 C -0.233 4.233 15 C -0.120 4.120 16 O -0.066 6.066 17 C 0.327 3.673 18 O -0.405 6.405 19 C -0.178 4.178 20 H 0.134 0.866 21 C -0.169 4.169 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.175 4.175 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.213 0.787 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.757 -15.066 -1.173 16.554 hybrid contribution 0.039 0.888 -0.495 1.017 sum 6.796 -14.179 -1.668 15.811 Atomic orbital electron populations 1.69938 1.05997 1.27031 1.50276 1.24929 0.94859 0.99189 0.95027 0.86505 0.79888 0.83093 0.78005 1.20617 1.21100 1.19865 1.21430 0.93384 0.90562 1.51259 0.92344 1.19312 0.87376 0.81843 0.98593 1.48253 1.46074 1.34563 1.03298 1.19876 0.94152 0.90527 0.88768 1.23262 1.00639 0.82874 1.00576 1.21693 0.97212 0.98855 1.03972 1.21806 1.02826 0.93287 1.05421 1.23914 0.90035 0.97786 1.00274 1.84027 1.44169 1.18560 1.59838 1.19454 0.81309 0.82550 0.83979 1.90596 1.58029 1.61253 1.30665 1.22154 1.01924 0.95710 0.98009 0.86565 1.22685 0.99636 0.92528 1.02075 1.22090 0.96451 1.02332 0.92100 1.22495 0.93946 0.98710 0.98455 1.22735 0.97346 0.98677 0.98703 1.22610 0.96371 1.02572 0.92982 0.92702 0.94889 0.93824 0.86808 0.89811 0.83361 0.83902 0.78682 0.88341 0.88711 0.89854 0.91719 0.90192 0.91776 0.88232 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 10 N -0.59 -12.57 2.44 -176.43 -0.43 -13.00 16 11 C 0.19 3.19 5.76 -5.19 -0.03 3.16 16 12 C -0.02 -0.35 6.90 -35.62 -0.25 -0.60 16 13 C -0.20 -3.12 10.81 -39.70 -0.43 -3.55 16 14 C -0.21 -2.89 10.91 -39.70 -0.43 -3.32 16 15 C -0.05 -0.65 12.09 29.42 0.36 -0.29 16 16 O -0.17 -2.51 10.65 5.72 0.06 -2.45 16 17 C 0.54 11.49 7.46 -10.99 -0.08 11.40 16 18 O -0.53 -13.25 13.68 5.56 0.08 -13.18 16 19 C -0.16 -2.55 5.29 -91.99 -0.49 -3.04 16 20 H 0.12 1.67 6.44 -51.92 -0.33 1.33 16 21 C -0.13 -1.87 10.24 -26.95 -0.28 -2.15 16 22 C -0.13 -1.91 2.88 -154.80 -0.45 -2.35 16 23 C -0.10 -1.17 8.10 -26.14 -0.21 -1.38 16 24 C -0.14 -1.78 8.08 -25.80 -0.21 -1.99 16 25 C -0.11 -1.67 7.63 -26.13 -0.20 -1.87 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.11 1.84 8.07 -51.93 -0.42 1.42 16 30 H 0.08 1.18 5.99 -51.93 -0.31 0.87 16 31 H 0.15 2.34 8.06 -52.48 -0.42 1.91 16 32 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.90 5.83 -51.93 -0.30 1.60 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -32.59 346.18 -8.45 -41.04 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.94 Total: 4.35 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.14 Total: -12.99 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.31 Total: -38.66 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.14 Total: -15.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.59 -8.45 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610737941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.747 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds