Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48501 * 109.46785 * 269.99385 * 3 2 1 5 5 H 1.48492 * 109.47416 * 29.99602 * 3 2 1 6 6 H 1.48503 * 109.46739 * 149.99774 * 3 2 1 7 7 C 1.37879 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99675 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46793 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99957 * 269.99972 * 10 9 7 12 12 C 1.50706 * 109.47149 * 269.99955 * 11 10 9 13 13 C 1.34510 * 125.79212 * 89.99970 * 12 11 10 14 14 C 1.41383 * 106.84655 * 180.02562 * 13 12 11 15 15 C 1.34515 * 106.83354 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.42436 * 359.73653 * 15 14 13 17 17 C 1.34778 * 120.00192 * 90.00049 * 10 9 7 18 18 O 1.21282 * 119.99732 * 359.97438 * 17 10 9 19 19 C 1.50697 * 120.00167 * 179.97438 * 17 10 9 20 20 H 1.09007 * 115.57841 * 34.22868 * 19 17 10 21 21 C 1.53119 * 117.51587 * 248.46183 * 19 17 10 22 22 C 1.52461 * 59.85855 * 252.55088 * 21 19 17 23 23 C 1.53252 * 128.58482 * 242.40332 * 22 21 19 24 24 C 1.53893 * 86.88554 * 194.88180 * 23 22 21 25 25 C 1.53256 * 128.58907 * 117.59645 * 22 21 19 26 26 H 0.96999 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47898 * 59.99845 * 9 7 2 28 28 H 1.08997 * 109.47501 * 299.99289 * 9 7 2 29 29 H 1.09003 * 109.47341 * 29.99780 * 11 10 9 30 30 H 1.08999 * 109.47584 * 150.00274 * 11 10 9 31 31 H 1.08006 * 126.57618 * 359.96148 * 13 12 11 32 32 H 1.07993 * 126.58069 * 180.02562 * 14 13 12 33 33 H 1.08009 * 125.78558 * 180.02562 * 15 14 13 34 34 H 1.08992 * 117.51619 * 145.10113 * 21 19 17 35 35 H 1.09000 * 117.54291 * 359.97438 * 21 19 17 36 36 H 1.09004 * 113.64339 * 309.37841 * 23 22 21 37 37 H 1.08996 * 113.65015 * 80.38625 * 23 22 21 38 38 H 1.08994 * 113.58858 * 270.39430 * 24 23 22 39 39 H 1.09000 * 113.58960 * 139.56593 * 24 23 22 40 40 H 1.09004 * 113.64188 * 279.61220 * 25 22 21 41 41 H 1.09000 * 113.64167 * 50.52482 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2682 12 6 1.7624 -5.2836 -1.7032 13 6 0.6698 -5.1471 -2.4758 14 6 0.1144 -6.4379 -2.6319 15 6 0.9006 -7.2859 -1.9447 16 8 1.9002 -6.5820 -1.3888 17 6 2.6411 -4.1249 1.1677 18 8 2.2473 -3.6636 2.2180 19 6 3.6199 -5.2706 1.1677 20 1 4.3460 -5.2693 0.3546 21 6 3.1191 -6.6289 1.6665 22 6 4.0777 -5.8059 2.5199 23 6 5.4968 -6.1615 2.9763 24 6 5.3700 -5.0088 3.9880 25 6 3.8460 -5.2091 3.9123 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5572 -0.8896 28 1 0.6242 -2.5568 0.8903 29 1 2.6868 -3.3877 -2.0279 30 1 3.6886 -4.5594 -1.1379 31 1 0.2892 -4.2276 -2.8956 32 1 -0.7710 -6.6938 -3.1947 33 1 0.7554 -8.3527 -1.8588 34 1 3.5157 -7.5209 1.1816 35 1 2.0819 -6.6940 1.9951 36 1 5.5731 -7.1446 3.4410 37 1 6.2568 -5.9921 2.2136 38 1 5.7034 -4.0473 3.5977 39 1 5.7920 -5.2386 4.9663 40 1 3.2826 -4.2760 3.8997 41 1 3.4614 -5.9266 4.6370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610737941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = 16.202269 kcal Electronic energy + Delta-G solvation = -23444.395546 eV Core-core repulsion = 20099.253647 eV Total energy + Delta-G solvation = -3345.141899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.39487 -41.34081 -39.36742 -36.84774 -35.00301 -34.42358 -33.78594 -31.53479 -29.56083 -26.82166 -26.51374 -26.08895 -23.76910 -23.46452 -22.57545 -21.64654 -20.31423 -19.12047 -18.78958 -18.24828 -17.91303 -17.20923 -16.62809 -16.27628 -16.24178 -16.03520 -15.63131 -15.06765 -14.96987 -14.34603 -13.99041 -13.70883 -13.67167 -13.54094 -13.36330 -13.21268 -13.03165 -12.94852 -12.67176 -12.53001 -12.39075 -12.29798 -12.15976 -11.76341 -11.23356 -10.94576 -10.79164 -10.70012 -10.64721 -10.31664 -9.66768 -9.35245 -8.24379 -6.39266 0.79160 1.35447 1.38594 1.48713 1.60638 1.72153 2.16538 2.32601 2.42698 2.88227 3.05619 3.42407 3.63220 3.76771 3.89944 3.93008 4.00506 4.03019 4.17504 4.20663 4.38534 4.51373 4.53088 4.69642 4.83631 4.86670 4.90720 4.93895 4.97985 5.06363 5.07159 5.10940 5.20090 5.24410 5.34237 5.44439 5.51951 5.57707 5.64426 5.79056 6.02933 6.27014 6.64068 6.71813 7.26076 7.44089 8.83263 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.006910 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.273373 B = 4050.866655 C = 6255.492738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.267 3.733 10 N -0.596 5.596 11 C 0.191 3.809 12 C -0.040 4.040 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.033 4.033 16 O -0.172 6.172 17 C 0.528 3.472 18 O -0.582 6.582 19 C -0.168 4.168 20 H 0.142 0.858 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.076 4.076 24 C -0.135 4.135 25 C -0.123 4.123 26 H 0.267 0.733 27 H 0.022 0.978 28 H -0.007 1.007 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 -17.814 -2.637 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.146 3.854 10 N -0.326 5.326 11 C 0.068 3.932 12 C -0.092 4.092 13 C -0.236 4.236 14 C -0.251 4.251 15 C -0.100 4.100 16 O -0.068 6.068 17 C 0.318 3.682 18 O -0.462 6.462 19 C -0.189 4.189 20 H 0.160 0.840 21 C -0.149 4.149 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.011 0.989 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.182 0.818 33 H 0.260 0.740 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.106 -17.535 -1.922 19.852 hybrid contribution -0.806 1.590 -0.258 1.801 sum 8.300 -15.945 -2.180 18.108 Atomic orbital electron populations 1.70065 1.07637 1.28171 1.50929 1.25864 0.95761 1.03060 0.94344 0.85408 0.78250 0.78239 0.78883 1.18611 1.20729 1.19727 1.21689 0.93352 0.91691 1.51353 0.92569 1.18695 0.87721 0.83480 0.95460 1.48222 1.45216 1.33656 1.05529 1.20013 0.95800 0.90920 0.86455 1.22923 1.00998 0.83537 1.01726 1.21884 0.97646 0.99810 1.04234 1.22107 1.04114 0.92275 1.06602 1.24834 0.88093 0.99376 0.97728 1.84010 1.44969 1.17820 1.59994 1.20442 0.81487 0.83341 0.82947 1.90581 1.60045 1.63151 1.32438 1.22092 1.01708 0.94723 1.00343 0.84008 1.22758 0.98732 0.92377 1.01027 1.22336 0.98791 1.01776 0.90737 1.22482 0.91718 0.99245 0.97892 1.22710 0.95108 0.98803 1.00576 1.22673 0.97855 1.00917 0.94611 0.92407 0.95999 0.98934 0.87078 0.86676 0.84600 0.81754 0.74019 0.84613 0.90688 0.86992 0.90168 0.91928 0.89449 0.93037 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 8 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.27 14.85 5.16 85.63 0.44 15.29 16 10 N -0.60 -26.51 2.44 -830.49 -2.03 -28.54 16 11 C 0.19 6.40 5.76 85.64 0.49 6.90 16 12 C -0.04 -1.29 6.90 24.83 0.17 -1.11 16 13 C -0.22 -6.89 10.81 22.19 0.24 -6.65 16 14 C -0.23 -5.89 10.91 22.19 0.24 -5.64 16 15 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 16 O -0.17 -4.68 10.65 -2.45 -0.03 -4.70 16 17 C 0.53 23.36 7.46 87.66 0.65 24.02 16 18 O -0.58 -31.32 13.68 -3.04 -0.04 -31.37 16 19 C -0.17 -5.27 5.29 -11.68 -0.06 -5.34 16 20 H 0.14 3.66 6.44 -2.38 -0.02 3.65 16 21 C -0.11 -2.90 10.24 30.46 0.31 -2.59 16 22 C -0.14 -3.76 2.88 -52.37 -0.15 -3.91 16 23 C -0.08 -1.52 8.10 30.98 0.25 -1.27 16 24 C -0.13 -3.27 8.08 31.19 0.25 -3.02 16 25 C -0.12 -3.81 7.63 30.98 0.24 -3.57 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 28 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 29 H 0.11 3.71 8.07 -2.39 -0.02 3.69 16 30 H 0.12 3.07 5.99 -2.39 -0.01 3.05 16 31 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.24 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 2.11 5.83 -2.39 -0.01 2.09 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.73 346.18 5.83 -70.89 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.02 Total: 20.26 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.59 Total: -17.23 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.74 Total: -85.20 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.07 Total: -36.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.73 5.83 -70.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610737941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.096 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds