Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02781 * 2 1 4 4 C 1.38245 * 120.05301 * 180.30094 * 3 2 1 5 5 C 1.38288 * 120.11135 * 359.67452 * 4 3 2 6 6 C 1.38119 * 120.05616 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02664 * 179.68089 * 2 1 3 8 8 O 1.35898 * 120.05829 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00226 * 179.72898 * 8 7 2 10 10 C 1.50702 * 109.47071 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99998 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99855 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47299 * 184.79547 * 13 12 10 15 15 C 1.50704 * 115.54588 * 294.81766 * 14 13 12 16 16 H 1.07999 * 119.99785 * 95.20816 * 15 14 13 17 17 C 1.37877 * 119.99726 * 274.92551 * 15 14 13 18 18 N 1.31515 * 120.00084 * 355.41881 * 17 15 14 19 19 Si 1.86796 * 120.00102 * 175.42113 * 17 15 14 20 20 H 1.48504 * 109.47025 * 89.99775 * 19 17 15 21 21 H 1.48493 * 109.47332 * 210.00070 * 19 17 15 22 22 H 1.48499 * 109.47076 * 330.00113 * 19 17 15 23 23 C 1.53001 * 117.49754 * 80.48183 * 14 13 12 24 24 C 1.52994 * 117.50156 * 149.14359 * 14 13 12 25 25 H 1.08995 * 109.47218 * 270.32369 * 1 2 3 26 26 H 1.09000 * 109.46791 * 30.32173 * 1 2 3 27 27 H 1.08999 * 109.47401 * 150.31989 * 1 2 3 28 28 H 1.07998 * 119.97231 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.94501 * 179.69690 * 4 3 2 30 30 H 1.08005 * 119.96966 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.02396 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47002 * 59.99739 * 9 8 7 33 33 H 1.09000 * 109.46519 * 299.99548 * 9 8 7 34 34 H 0.96999 * 119.99492 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47302 * 64.79393 * 13 12 10 36 36 H 1.09005 * 109.46853 * 304.79585 * 13 12 10 37 37 H 0.97004 * 120.00173 * 185.00091 * 18 17 15 38 38 H 1.09003 * 117.49648 * 214.99946 * 23 14 13 39 39 H 1.08991 * 117.50066 * 0.03054 * 23 14 13 40 40 H 1.08996 * 117.49909 * 359.97438 * 24 14 13 41 41 H 1.09006 * 117.50020 * 144.97002 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0063 5 6 4.2752 0.0009 -0.0058 6 6 3.5886 -1.1976 0.0005 7 6 2.2011 -1.2009 0.0067 8 8 1.5234 -2.3788 0.0127 9 6 2.3034 -3.5762 0.0134 10 6 1.3871 -4.7726 0.0210 11 8 0.1845 -4.6154 0.0259 12 7 1.9040 -6.0173 0.0224 13 6 1.0133 -7.1804 0.0292 14 6 1.8449 -8.4589 0.1500 15 6 2.7528 -8.7562 -1.0155 16 1 3.7881 -8.4503 -0.9852 17 6 2.2631 -9.4239 -2.1180 18 7 1.0298 -9.8806 -2.1160 19 14 3.3514 -9.6800 -3.6144 20 1 4.0899 -10.9609 -3.4761 21 1 2.5097 -9.7233 -4.8370 22 1 4.3199 -8.5592 -3.7197 23 6 2.3333 -8.8549 1.5449 24 6 1.2103 -9.6488 0.8727 25 1 -0.3633 0.0058 1.0276 26 1 -0.3633 0.8871 -0.5188 27 1 -0.3634 -0.8928 -0.5088 28 1 1.6584 2.1315 -0.0004 29 1 4.1195 2.1329 -0.0112 30 1 5.3552 0.0041 -0.0103 31 1 4.1314 -2.1313 0.0004 32 1 2.9356 -3.5974 0.9011 33 1 2.9288 -3.6027 -0.8789 34 1 2.8659 -6.1429 0.0181 35 1 0.4412 -7.2053 -0.8982 36 1 0.3302 -7.1099 0.8758 37 1 0.7084 -10.4127 -2.8607 38 1 3.3112 -9.3306 1.6195 39 1 2.0617 -8.2048 2.3765 40 1 0.2006 -9.5206 1.2625 41 1 1.4491 -10.6468 0.5049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701161363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = -31.813608 kcal Electronic energy + Delta-G solvation = -22135.331080 eV Core-core repulsion = 18788.107056 eV Total energy + Delta-G solvation = -3347.224024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.43809 -39.05240 -37.37360 -36.58993 -33.42869 -32.92229 -32.01573 -30.33990 -28.84749 -26.82108 -26.03991 -25.00344 -22.40435 -21.64671 -21.21285 -19.92139 -19.36406 -18.18848 -17.06950 -16.30998 -16.07018 -15.85939 -15.65122 -14.84456 -14.73802 -14.44043 -14.38623 -13.87891 -13.45964 -13.26154 -13.16285 -12.81744 -12.48819 -12.33791 -12.20213 -11.82645 -11.64124 -11.44885 -11.10180 -11.04345 -10.98819 -10.98065 -10.57787 -10.28573 -9.67346 -9.37909 -9.10997 -8.97453 -8.55562 -8.36948 -8.22020 -8.17494 -6.12578 -4.23142 1.17338 1.31241 2.77719 2.99711 3.21907 3.30629 3.31093 3.61674 3.99377 4.30558 4.62176 4.69754 4.89856 4.91677 5.08673 5.11850 5.15046 5.15925 5.25358 5.34581 5.47485 5.56321 5.68492 5.75182 5.96571 6.15782 6.20289 6.27928 6.33160 6.39714 6.41121 6.48904 6.64673 6.65427 6.78442 7.07307 7.13339 7.31257 7.32817 7.48226 7.75594 8.12375 8.27529 8.69594 8.78654 9.44554 10.94449 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.003301 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.743522 B = 8480.542025 C = 8960.262533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.159 4.159 5 C -0.087 4.087 6 C -0.208 4.208 7 C 0.131 3.869 8 O -0.285 6.285 9 C 0.040 3.960 10 C 0.506 3.494 11 O -0.534 6.534 12 N -0.699 5.699 13 C 0.165 3.835 14 C 0.023 3.977 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.211 4.211 24 C -0.141 4.141 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 17.439 4.629 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.227 4.227 7 C 0.085 3.915 8 O -0.197 6.197 9 C -0.038 4.038 10 C 0.290 3.710 11 O -0.411 6.411 12 N -0.349 5.349 13 C 0.042 3.958 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.509 5.509 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.179 4.179 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.085 17.436 4.479 18.460 hybrid contribution 1.380 -0.474 -0.888 1.708 sum 5.465 16.962 3.591 18.179 Atomic orbital electron populations 1.20639 0.90333 1.03025 1.02448 1.19315 0.96775 0.90225 1.05259 1.20877 0.94124 0.96679 0.98655 1.21019 0.94217 0.98021 1.04499 1.20916 0.99742 0.91858 0.97947 1.21306 0.92935 0.99712 1.08714 1.18943 0.90462 0.85770 0.96311 1.86165 1.34171 1.11241 1.88083 1.22569 0.94143 0.83564 1.03572 1.19876 0.88917 0.84053 0.78201 1.90710 1.15088 1.85896 1.49426 1.45847 1.11394 1.04730 1.72952 1.21054 0.91093 0.83125 1.00493 1.19037 0.97685 0.91048 0.89997 1.20342 0.95388 1.39024 0.99269 0.92165 1.24997 0.94796 0.95099 0.98192 1.69985 1.15299 1.33826 1.31803 0.86618 0.80377 0.78566 0.82610 1.20659 1.21138 1.19796 1.23026 0.98916 1.05778 0.97096 1.22471 0.94307 0.97954 1.03190 0.91350 0.91855 0.90571 0.85516 0.86072 0.85876 0.85253 0.89288 0.89096 0.76362 0.91232 0.93940 0.92792 0.90339 0.91693 0.91767 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.79 36.01 0.35 -0.87 16 2 C -0.12 -1.41 5.89 -104.47 -0.62 -2.03 16 3 C -0.09 -0.86 9.70 -39.60 -0.38 -1.24 16 4 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 5 C -0.09 -0.85 10.04 -39.61 -0.40 -1.24 16 6 C -0.21 -2.35 9.04 -39.43 -0.36 -2.70 16 7 C 0.13 1.76 6.66 -39.22 -0.26 1.50 16 8 O -0.28 -4.44 8.71 -39.33 -0.34 -4.79 16 9 C 0.04 0.56 5.22 36.01 0.19 0.74 16 10 C 0.51 9.25 7.91 -10.98 -0.09 9.17 16 11 O -0.53 -12.05 16.50 -14.36 -0.24 -12.29 16 12 N -0.70 -12.88 5.48 -60.29 -0.33 -13.21 16 13 C 0.16 3.63 5.50 -4.04 -0.02 3.61 16 14 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 15 C -0.50 -12.54 8.59 -34.44 -0.30 -12.83 16 16 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.87 -23.80 12.65 55.43 0.70 -23.10 16 19 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 23 C -0.21 -4.26 9.96 -26.69 -0.27 -4.52 16 24 C -0.14 -3.17 9.14 -26.70 -0.24 -3.41 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 28 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 32 H 0.09 0.97 7.66 -51.93 -0.40 0.58 16 33 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 34 H 0.40 6.55 8.33 -40.82 -0.34 6.21 16 35 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.55 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -30.35 351.42 -9.10 -39.45 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.05 Total: 7.16 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.11 Total: -13.63 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.37 Total: -36.31 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.58 Total: -17.08 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.35 -9.10 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701161363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.637 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds