Wall clock time and date at job start Tue Mar 31 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 120.02781 * 2 1 4 4 C 1.38245 * 120.05301 * 180.30094 * 3 2 1 5 5 C 1.38288 * 120.11135 * 359.67452 * 4 3 2 6 6 C 1.38119 * 120.05616 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02664 * 179.68089 * 2 1 3 8 8 O 1.35898 * 120.05829 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00226 * 179.72898 * 8 7 2 10 10 C 1.50702 * 109.47071 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99998 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99855 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47299 * 184.79547 * 13 12 10 15 15 C 1.50704 * 115.54588 * 294.81766 * 14 13 12 16 16 H 1.07999 * 119.99785 * 95.20816 * 15 14 13 17 17 C 1.37877 * 119.99726 * 274.92551 * 15 14 13 18 18 N 1.31515 * 120.00084 * 355.41881 * 17 15 14 19 19 Si 1.86796 * 120.00102 * 175.42113 * 17 15 14 20 20 H 1.48504 * 109.47025 * 89.99775 * 19 17 15 21 21 H 1.48493 * 109.47332 * 210.00070 * 19 17 15 22 22 H 1.48499 * 109.47076 * 330.00113 * 19 17 15 23 23 C 1.53001 * 117.49754 * 80.48183 * 14 13 12 24 24 C 1.52994 * 117.50156 * 149.14359 * 14 13 12 25 25 H 1.08995 * 109.47218 * 270.32369 * 1 2 3 26 26 H 1.09000 * 109.46791 * 30.32173 * 1 2 3 27 27 H 1.08999 * 109.47401 * 150.31989 * 1 2 3 28 28 H 1.07998 * 119.97231 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.94501 * 179.69690 * 4 3 2 30 30 H 1.08005 * 119.96966 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.02396 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47002 * 59.99739 * 9 8 7 33 33 H 1.09000 * 109.46519 * 299.99548 * 9 8 7 34 34 H 0.96999 * 119.99492 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47302 * 64.79393 * 13 12 10 36 36 H 1.09005 * 109.46853 * 304.79585 * 13 12 10 37 37 H 0.97004 * 120.00173 * 185.00091 * 18 17 15 38 38 H 1.09003 * 117.49648 * 214.99946 * 23 14 13 39 39 H 1.08991 * 117.50066 * 0.03054 * 23 14 13 40 40 H 1.08996 * 117.49909 * 359.97438 * 24 14 13 41 41 H 1.09006 * 117.50020 * 144.97002 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0063 5 6 4.2752 0.0009 -0.0058 6 6 3.5886 -1.1976 0.0005 7 6 2.2011 -1.2009 0.0067 8 8 1.5234 -2.3788 0.0127 9 6 2.3034 -3.5762 0.0134 10 6 1.3871 -4.7726 0.0210 11 8 0.1845 -4.6154 0.0259 12 7 1.9040 -6.0173 0.0224 13 6 1.0133 -7.1804 0.0292 14 6 1.8449 -8.4589 0.1500 15 6 2.7528 -8.7562 -1.0155 16 1 3.7881 -8.4503 -0.9852 17 6 2.2631 -9.4239 -2.1180 18 7 1.0298 -9.8806 -2.1160 19 14 3.3514 -9.6800 -3.6144 20 1 4.0899 -10.9609 -3.4761 21 1 2.5097 -9.7233 -4.8370 22 1 4.3199 -8.5592 -3.7197 23 6 2.3333 -8.8549 1.5449 24 6 1.2103 -9.6488 0.8727 25 1 -0.3633 0.0058 1.0276 26 1 -0.3633 0.8871 -0.5188 27 1 -0.3634 -0.8928 -0.5088 28 1 1.6584 2.1315 -0.0004 29 1 4.1195 2.1329 -0.0112 30 1 5.3552 0.0041 -0.0103 31 1 4.1314 -2.1313 0.0004 32 1 2.9356 -3.5974 0.9011 33 1 2.9288 -3.6027 -0.8789 34 1 2.8659 -6.1429 0.0181 35 1 0.4412 -7.2053 -0.8982 36 1 0.3302 -7.1099 0.8758 37 1 0.7084 -10.4127 -2.8607 38 1 3.3112 -9.3306 1.6195 39 1 2.0617 -8.2048 2.3765 40 1 0.2006 -9.5206 1.2625 41 1 1.4491 -10.6468 0.5049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701161363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:31 Heat of formation + Delta-G solvation = -48.672414 kcal Electronic energy + Delta-G solvation = -22136.062133 eV Core-core repulsion = 18788.107056 eV Total energy + Delta-G solvation = -3347.955076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45232 -40.42724 -38.63249 -38.06182 -35.06105 -33.96287 -33.73531 -31.22922 -30.05193 -27.90612 -27.58784 -26.68838 -23.34926 -22.91527 -22.47921 -21.46764 -21.06451 -19.12708 -18.57190 -17.72976 -17.41769 -17.00031 -16.65884 -16.50613 -16.18583 -15.88138 -15.42448 -15.21351 -14.82093 -14.43614 -14.38041 -13.99593 -13.70460 -13.67398 -13.46462 -13.16729 -12.98471 -12.92515 -12.81151 -12.36649 -12.22493 -12.05556 -12.02362 -11.79765 -11.42148 -10.98104 -10.95015 -10.44752 -10.08774 -9.91171 -9.74958 -9.08289 -8.09494 -6.24174 0.39842 0.50053 1.42737 1.45984 1.53392 1.54331 1.63034 2.42267 2.74988 2.83286 3.18717 3.46711 3.69283 3.86770 3.97755 4.03262 4.10279 4.22598 4.24538 4.43692 4.44844 4.53668 4.63943 4.67540 4.71458 4.77637 4.78763 4.97489 5.00179 5.02164 5.28531 5.31839 5.42928 5.50330 5.53774 5.55665 5.62402 5.68602 5.78007 5.88811 6.35624 6.39004 6.66519 6.84468 7.25550 7.46246 8.97389 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020786 B = 0.003301 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.743522 B = 8480.542025 C = 8960.262533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.087 4.087 4 C -0.157 4.157 5 C -0.090 4.090 6 C -0.214 4.214 7 C 0.100 3.900 8 O -0.316 6.316 9 C 0.050 3.950 10 C 0.504 3.496 11 O -0.584 6.584 12 N -0.690 5.690 13 C 0.180 3.820 14 C 0.003 3.997 15 C -0.505 4.505 16 H 0.068 0.932 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.261 1.261 23 C -0.175 4.175 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.415 0.585 35 H 0.027 0.973 36 H 0.039 0.961 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 19.554 5.165 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.105 4.105 4 C -0.175 4.175 5 C -0.107 4.107 6 C -0.232 4.232 7 C 0.055 3.945 8 O -0.230 6.230 9 C -0.028 4.028 10 C 0.290 3.710 11 O -0.465 6.465 12 N -0.342 5.342 13 C 0.056 3.944 14 C 0.002 3.998 15 C -0.542 4.542 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.546 5.546 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.185 1.185 23 C -0.212 4.212 24 C -0.194 4.194 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.075 19.566 5.026 21.404 hybrid contribution 0.481 -1.048 -1.020 1.540 sum 7.556 18.518 4.006 20.397 Atomic orbital electron populations 1.20594 0.90606 1.02571 1.02354 1.19599 0.97059 0.90984 1.06296 1.21193 0.94826 0.96704 0.97778 1.21441 0.94054 0.99247 1.02716 1.21315 1.01214 0.91392 0.96826 1.21556 0.92072 1.01233 1.08367 1.19250 0.91613 0.85139 0.98526 1.86108 1.35637 1.12244 1.88987 1.22533 0.92741 0.81251 1.06285 1.20700 0.88907 0.85011 0.76397 1.90685 1.17626 1.86642 1.51509 1.45669 1.11598 1.04115 1.72796 1.20607 0.91235 0.84406 0.98156 1.19058 0.98286 0.91252 0.91166 1.20696 0.95915 1.37895 0.99719 0.91373 1.25728 0.95852 0.95374 1.00812 1.70118 1.16986 1.35075 1.32425 0.85684 0.78812 0.78808 0.79137 1.20305 1.22100 1.18491 1.23013 0.98225 1.04059 0.95933 1.22393 0.95535 0.96944 1.04504 0.91350 0.89698 0.93501 0.83185 0.83201 0.83167 0.83679 0.85875 0.86664 0.74790 0.95453 0.94262 0.93262 0.89449 0.89326 0.91412 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 2 C -0.14 -3.29 5.89 -19.77 -0.12 -3.41 16 3 C -0.09 -1.54 9.70 22.25 0.22 -1.33 16 4 C -0.16 -2.38 10.04 22.28 0.22 -2.16 16 5 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.21 -4.29 9.04 22.37 0.20 -4.09 16 7 C 0.10 2.59 6.66 22.51 0.15 2.74 16 8 O -0.32 -9.88 8.71 -73.36 -0.64 -10.51 16 9 C 0.05 1.30 5.22 71.24 0.37 1.67 16 10 C 0.50 18.40 7.91 87.66 0.69 19.10 16 11 O -0.58 -27.30 16.50 15.99 0.26 -27.03 16 12 N -0.69 -25.09 5.48 -463.05 -2.54 -27.63 16 13 C 0.18 8.06 5.50 86.38 0.48 8.53 16 14 C 0.00 0.14 1.47 -52.93 -0.08 0.06 16 15 C -0.50 -24.89 8.59 25.60 0.22 -24.67 16 16 H 0.07 3.19 7.82 -2.91 -0.02 3.16 16 17 C 0.02 1.20 5.43 84.65 0.46 1.66 16 18 N -0.91 -50.81 12.65 21.45 0.27 -50.54 16 19 Si 0.95 41.29 29.54 68.60 2.03 43.32 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 C -0.18 -6.74 9.96 30.62 0.30 -6.44 16 24 C -0.16 -7.01 9.14 30.62 0.28 -6.73 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 27 H 0.05 1.33 7.53 -2.39 -0.02 1.31 16 28 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 32 H 0.12 2.35 7.66 -2.39 -0.02 2.33 16 33 H 0.12 2.43 7.66 -2.39 -0.02 2.41 16 34 H 0.42 12.78 8.33 -92.71 -0.77 12.00 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16 37 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.06 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -68.08 351.42 3.96 -64.11 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.26 Total: 26.29 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.32 Total: -18.00 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.27 Total: -78.17 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.38 Total: -37.55 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -68.08 3.96 -64.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701161363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.442 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds