Wall clock time and date at job start Tue Mar 31 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.84812 * 2 1 4 4 C 1.53782 * 113.61453 * 131.19692 * 2 1 3 5 5 C 1.53781 * 87.07861 * 89.11467 * 4 2 1 6 6 C 1.50706 * 113.61215 * 139.97856 * 5 4 2 7 7 O 1.21288 * 120.00233 * 1.53026 * 6 5 4 8 8 N 1.34776 * 119.99743 * 181.52514 * 6 5 4 9 9 C 1.39994 * 119.99929 * 175.49259 * 8 6 5 10 10 C 1.38919 * 120.00231 * 215.12533 * 9 8 6 11 11 C 1.37999 * 119.99924 * 180.02562 * 10 9 8 12 12 C 1.38910 * 120.00160 * 0.02562 * 11 10 9 13 13 O 1.35779 * 119.99807 * 179.97438 * 12 11 10 14 14 C 1.34808 * 116.99993 * 5.34610 * 13 12 11 15 15 H 1.07993 * 120.00232 * 354.95901 * 14 13 12 16 16 C 1.38638 * 119.99879 * 174.96544 * 14 13 12 17 17 N 1.31574 * 119.99729 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99993 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47488 * 59.99764 * 18 16 14 20 20 H 1.48501 * 109.46725 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47029 * 299.99490 * 18 16 14 22 22 C 1.38916 * 120.00192 * 0.24907 * 12 11 10 23 23 C 1.38004 * 119.99934 * 359.45328 * 22 12 11 24 24 C 1.53781 * 87.17377 * 25.39275 * 5 4 2 25 25 H 1.09005 * 109.46635 * 288.80597 * 1 2 3 26 26 H 1.08997 * 109.46919 * 48.79938 * 1 2 3 27 27 H 1.08991 * 109.47032 * 168.80168 * 1 2 3 28 28 H 1.09003 * 109.46982 * 191.19640 * 3 2 1 29 29 H 1.08999 * 109.47485 * 311.19747 * 3 2 1 30 30 H 1.08994 * 109.47366 * 71.20241 * 3 2 1 31 31 H 1.08990 * 113.61291 * 334.56893 * 4 2 1 32 32 H 1.09001 * 113.61166 * 203.66300 * 4 2 1 33 33 H 1.09001 * 113.61577 * 270.79909 * 5 4 2 34 34 H 0.97000 * 120.00421 * 355.49787 * 8 6 5 35 35 H 1.08000 * 120.00375 * 0.02562 * 10 9 8 36 36 H 1.07998 * 120.00315 * 180.02562 * 11 10 9 37 37 H 0.97000 * 119.99551 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.99631 * 179.70245 * 22 12 11 39 39 H 1.07994 * 120.00054 * 180.27097 * 23 22 12 40 40 H 1.08999 * 113.61733 * 89.15822 * 24 5 4 41 41 H 1.09001 * 113.61038 * 220.05944 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3079 -2.9342 0.0027 7 8 4.1940 -2.7511 0.8104 8 7 3.4097 -3.9351 -0.8941 9 6 4.5784 -4.7034 -0.9558 10 6 5.0356 -5.1754 -2.1797 11 6 6.1873 -5.9332 -2.2404 12 6 6.8891 -6.2245 -1.0776 13 8 8.0220 -6.9706 -1.1373 14 6 8.4716 -7.3034 -2.3638 15 1 7.8926 -7.0482 -3.2389 16 6 9.6774 -7.9737 -2.5018 17 7 10.3830 -8.2843 -1.4356 18 14 10.3001 -8.4356 -4.2012 19 1 10.4781 -7.2059 -5.0144 20 1 11.6020 -9.1391 -4.0770 21 1 9.3155 -9.3286 -4.8633 22 6 6.4288 -5.7574 0.1470 23 6 5.2805 -4.9944 0.2071 24 6 2.1448 -0.9317 -1.0603 25 1 -0.3633 0.3313 0.9729 26 1 -0.3633 0.6769 -0.7732 27 1 -0.3633 -1.0080 -0.1996 28 1 3.1942 1.3533 -0.1996 29 1 1.6414 2.0077 -0.7732 30 1 1.9600 1.8734 0.9728 31 1 1.4946 -1.1068 1.9155 32 1 3.1591 -0.6486 1.3495 33 1 1.1573 -2.6019 0.0034 34 1 2.6734 -4.1231 -1.4968 35 1 4.4898 -4.9492 -3.0838 36 1 6.5430 -6.2998 -3.1919 37 1 11.2268 -8.7529 -1.5322 38 1 6.9719 -5.9880 1.0516 39 1 4.9251 -4.6276 1.1586 40 1 3.1575 -0.6532 -1.3518 41 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701489361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:21 Heat of formation + Delta-G solvation = -24.737487 kcal Electronic energy + Delta-G solvation = -22072.740561 eV Core-core repulsion = 18725.823381 eV Total energy + Delta-G solvation = -3346.917180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79327 -39.25804 -38.23084 -36.34951 -33.91506 -32.18896 -31.19300 -30.19805 -27.98715 -27.73221 -25.96057 -25.43299 -24.15111 -22.22526 -21.17720 -19.94676 -18.50853 -18.04915 -17.35903 -17.09093 -16.27191 -15.54208 -14.81004 -14.73702 -14.55873 -14.31673 -14.13832 -13.65961 -13.55476 -13.18269 -13.08866 -12.94115 -12.76038 -12.48696 -12.13804 -11.84801 -11.81642 -11.63806 -11.54862 -11.24898 -11.05804 -10.99409 -10.72792 -10.55799 -10.44524 -10.35951 -9.65282 -9.49376 -9.19096 -8.68927 -8.19065 -6.91602 -6.43239 -4.01464 2.11115 2.22492 2.86879 3.13522 3.15414 3.17709 3.36639 3.97869 4.14787 4.28744 4.43620 4.47501 4.59894 4.86801 5.06400 5.11274 5.15352 5.33289 5.33713 5.35288 5.47458 5.54679 5.57128 5.59185 5.64573 5.71639 5.80962 5.84241 5.91065 6.09342 6.16775 6.24169 6.25760 6.31991 6.82665 6.87630 7.01374 7.18372 7.23512 7.42483 7.75654 7.81317 8.01154 8.42910 9.01906 9.72665 10.74715 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.002747 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.372083 B =10188.707350 C =10418.388726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.107 4.107 5 C -0.136 4.136 6 C 0.514 3.486 7 O -0.527 6.527 8 N -0.660 5.660 9 C 0.034 3.966 10 C -0.090 4.090 11 C -0.220 4.220 12 C 0.147 3.853 13 O -0.177 6.177 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.180 4.180 23 C -0.068 4.068 24 C -0.114 4.114 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.401 0.599 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 13.831 -0.529 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.145 4.145 5 C -0.157 4.157 6 C 0.301 3.699 7 O -0.403 6.403 8 N -0.304 5.304 9 C -0.059 4.059 10 C -0.111 4.111 11 C -0.240 4.240 12 C 0.093 3.907 13 O -0.080 6.080 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.199 4.199 23 C -0.088 4.088 24 C -0.152 4.152 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.235 0.765 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.286 13.772 0.284 22.894 hybrid contribution -0.075 -0.423 -1.321 1.389 sum -18.361 13.349 -1.037 22.725 Atomic orbital electron populations 1.21607 0.93063 1.01908 1.01967 1.21828 0.95531 0.94802 0.96966 1.21720 1.00767 0.95102 1.01695 1.22956 1.02490 0.93318 0.95712 1.22717 0.97153 0.95207 1.00640 1.20547 0.88309 0.80150 0.80900 1.90687 1.41104 1.70599 1.37895 1.43268 1.17046 1.32120 1.37959 1.17299 0.91653 1.02883 0.94040 1.20486 0.96388 0.99315 0.94874 1.20968 0.97720 1.06203 0.99138 1.19419 0.87856 0.90144 0.93285 1.83989 1.33963 1.58490 1.31557 1.21262 1.05051 1.38050 0.82492 0.89148 1.25289 0.95145 0.96613 0.99501 1.70040 1.13659 1.37292 1.28737 0.85784 0.78396 0.78967 0.80286 1.19527 1.20286 1.19522 1.20160 0.99257 1.04265 0.96261 1.20743 0.94698 0.96050 0.97265 1.23047 1.01928 0.94215 0.96009 0.92246 0.92347 0.92383 0.92311 0.92652 0.92441 0.91080 0.88515 0.87150 0.76482 0.87222 0.85145 0.91968 0.86158 0.85354 0.89482 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.07 37.16 0.34 -0.45 16 2 C -0.09 -0.70 1.39 -153.60 -0.21 -0.92 16 3 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 4 C -0.11 -1.03 6.55 -25.92 -0.17 -1.20 16 5 C -0.14 -1.31 3.79 -90.96 -0.35 -1.65 16 6 C 0.51 7.26 7.20 -10.98 -0.08 7.18 16 7 O -0.53 -9.65 13.35 5.55 0.07 -9.57 16 8 N -0.66 -9.13 5.34 -9.82 -0.05 -9.18 16 9 C 0.03 0.61 6.30 -83.62 -0.53 0.08 16 10 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 11 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 12 C 0.15 3.63 6.65 -39.08 -0.26 3.37 16 13 O -0.18 -5.11 9.75 0.02 0.00 -5.11 16 14 C -0.39 -11.02 9.48 30.88 0.29 -10.72 16 15 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.76 16 18 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.18 -4.04 9.99 -39.42 -0.39 -4.43 16 23 C -0.07 -1.37 8.69 -39.41 -0.34 -1.71 16 24 C -0.11 -0.96 6.76 -25.83 -0.17 -1.14 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.33 7.34 -51.93 -0.38 -0.06 16 28 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.10 1.13 7.41 -51.93 -0.38 0.75 16 33 H 0.11 0.82 7.66 -51.93 -0.40 0.42 16 34 H 0.40 4.06 8.82 -40.82 -0.36 3.70 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 39 H 0.13 2.55 6.23 -52.49 -0.33 2.22 16 40 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 41 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -32.77 340.02 -7.26 -40.03 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.76 Total: 6.41 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -2.38 Total: -18.47 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.71 Total: -33.94 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.77 -7.26 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701489361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.289 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds